FvH4_5g16690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011746
Physical Location & Seq
Reverse (-)
9534906 .. 9535688
783 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16690.t1

Sequence Viewer

Length: 477 bp
ATGAAACAGTCTATCATTAGAAACCTCTCTCTTTATGCCCGTACTCGTCTTCTCTCTCCTCCCTGCTACAAATCCAGTTCCCAACTCGCTCTTTCCACTCGGCCCAGATTGAGTTTCTACTCGACTGAGTCACAAAATCAAGAGGTCTCCAAAGATGAAGACGATAACATCAGCAACGAAGAGCTGAAAATGCAAATTGACGATTACTTTAAAGGAAATGACAAAGCATTTCCAACTATCTTTGAGGCGATTCTGAAGAGGAAGTTATCAGGGAAGCATGAACAGACTGACAAGCAGTTGATGGAAGAGCTTCGGGGGAAGAAGCAGGGATCGCTGAGTGACGATGACGAGGAGGATGACGATGAGATTGAATCTGATTTCGATGAGTATTATGGGAGTGATGAGAAGGCTGCGGATTTGAATCAGGCAATGGATAGGTTGATGAAGGAGATGCCAAACACAAAGAGAGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.37

Weight (kDa)

4.66

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 1 cut(s) 43
AgsI TTSAA 2 cut(s) 371, 421
AluBI AGCT 2 cut(s) 184, 310
AluI AGCT 2 cut(s) 184, 310
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 337
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 102
BbsI GAAGAC 2 cut(s) 41, 165
BbvI GCAGC 1 cut(s) 397
BccI CCATC 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 151
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 102
BmsI GCATC 1 cut(s) 441
BpiI GAAGAC 2 cut(s) 41, 165
BsaBI GATNNNNATC 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 420
BseGI GGATG 1 cut(s) 361
BseJI GATNNNNATC 1 cut(s) 420
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 2 cut(s) 117, 326
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 2 cut(s) 48, 365
BseXI GCAGC 1 cut(s) 397
BshFI GGCC 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 151
BsnI GGCC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 1 cut(s) 413
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 118, 327
BspPI GGATC 1 cut(s) 337
BspQI GCTCTTC 2 cut(s) 174, 300
BspTNI GGTCTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 435
BsrI ACTGG 1 cut(s) 75
BssMI GATC 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 9
Bst6I CTCTTC 3 cut(s) 174, 251, 300
BstDEI CTNAG 2 cut(s) 126, 335
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 2 cut(s) 190, 331
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 2 cut(s) 41, 165
BsuRI GGCC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 42
CviAII CATG 1 cut(s) 278
CviJI RGCY 4 cut(s) 103, 184, 310, 410
CviKI_1 RGCY 4 cut(s) 103, 184, 310, 410
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 2 cut(s) 126, 335
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
DraI TTTAAA 1 cut(s) 211
Eam1104I CTCTTC 3 cut(s) 174, 251, 300
EarI CTCTTC 3 cut(s) 174, 251, 300
Eco31I GGTCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 275
FaeI CATG 1 cut(s) 281
FaiI YATR 3 cut(s) 36, 279, 393
FatI CATG 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 103
Hin1II CATG 1 cut(s) 281
HinfI GANTC 4 cut(s) 128, 250, 371, 421
Hpy188I TCNGA 2 cut(s) 255, 376
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 400, 439
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 331
HpyF3I CTNAG 2 cut(s) 126, 335
Hsp92II CATG 1 cut(s) 281
Kzo9I GATC 1 cut(s) 329
LguI GCTCTTC 2 cut(s) 174, 300
LpnPI CCDG 6 cut(s) 76, 88, 118, 255, 311, 410
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 129, 338
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 6 cut(s) 41, 170, 191, 268, 317, 331
MluCI AATT 2 cut(s) 195, 472
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 7 cut(s) 35, 69, 136, 238, 252, 343, 346
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 190, 331
NdeII GATC 1 cut(s) 329
NlaIII CATG 1 cut(s) 281
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 2 cut(s) 129, 338
PciSI GCTCTTC 2 cut(s) 174, 300
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 3 cut(s) 250, 371, 421
PflFI GACNNNGTC 1 cut(s) 127
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 102
PsyI GACNNNGTC 1 cut(s) 127
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SapI GCTCTTC 2 cut(s) 174, 300
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 1 cut(s) 137
SetI ASST 5 cut(s) 27, 147, 186, 312, 440
SfaNI GCATC 1 cut(s) 441
Sse9I AATT 2 cut(s) 195, 472
SsiI CCGC 1 cut(s) 413
TaaI ACNGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 122, 381
TasI AATT 2 cut(s) 195, 472
TfiI GAWTC 3 cut(s) 250, 371, 421
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseFI GTSAC 2 cut(s) 129, 338
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 2 cut(s) 129, 338
TspDTI ATGAA 4 cut(s) 17, 171, 294, 458
Tth111I GACNNNGTC 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.