Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011746

Physical Location & Seq

Genomic Coordinates Reverse (-)

35237139 .. 35238389

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1220600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAAAGATCCCTGCTTAGAAATGTCTGTTTCTACGCTCGCACTCGTCTTCTCTCTCCTCCCTGCTACAATCCGATCCCTAAAGCCCAACTCGGCCCTCCGCTCGCTGCTTCGACTCGGCCCAGACTCAGCTTCTACTCCACCGAGTCACCCTCACCCAGGAAAGAGGCTTCCAATGATGCAGGGGATGATGGTGTCAGTAATGAAGAGCTGAAAATGCGAATTGATTCCTACTATAGTGGGAATCAGGAGGCATTGCCATCAATCTTTGAAGCAATTCTGAAGAGGAAGTTGGCAGGGAAGGACGAAGAGACCGATGAGAAATTGATGGAAGAGATTCTCGGGCACGGGCAGGAGCCGCTGAGTGATGTCGACGATGATGTTGAAGCTGATTCCGATGAATTGTCAGGCAGTGATTTGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.75

Weight (kDa)

4.54

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73770 AT1G73770 AT1G73770
fragaria_vesca	FvH4_5g16690
malus_domestica	MD06G1220600.v1.1
prunus_persica	Prupe.5G225000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0179411
rosa_laevigata	RLG00000005358
rosa_multiflora	Rmu_sc0000735.1_g000027 Rmu_sc0002581.1_g000002 Rmu_sc0012414.1_g000007 Rmu_sc0028926.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274040
rosa_rugosa	Rorug06G0424200
rosa_samantha	Rh7AG023600 Rh7BG023200 Rh7CG024600 Rh7DG024100
rosa_wichuraiana	Rw7G001910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	2 cut(s)	101, 359
AclWI	GGATC	2 cut(s)	3, 70
AcsI	RAATTY	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	272, 386
AjnI	CCWGG	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	3 cut(s)	132, 211, 389
AluI	AGCT	3 cut(s)	132, 211, 389
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	2 cut(s)	3, 70
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	94, 119
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	423
Asp700I	GAANNNNTTC	3 cut(s)	226, 276, 336
AspS9I	GGNCC	2 cut(s)	95, 120
AsuHPI	GGTGA	2 cut(s)	141, 147
AvaI	CYCGRG	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	3 cut(s)	185, 268, 322
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	2 cut(s)	108, 359
BlsI	GCNGC	2 cut(s)	109, 360
Bme1390I	CCNGG	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	95, 120
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	142, 353
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	94
BshFI	GGCC	2 cut(s)	96, 121
BsiHKCI	CYCGRG	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	96, 121
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	8, 75
BspACI	CCGC	2 cut(s)	101, 359
BspANI	GGCC	2 cut(s)	96, 121
BspCNI	CTCAG	2 cut(s)	141, 354
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	2 cut(s)	3, 70
BspQI	GCTCTTC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	8, 75
Bst2UI	CCWGG	1 cut(s)	160
Bst6I	CTCTTC	4 cut(s)	201, 278, 303, 327
BstC8I	GCNNGC	2 cut(s)	40, 105
BstDEI	CTNAG	3 cut(s)	17, 128, 362
BstENI	CCTNNNNNAGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	2 cut(s)	11, 78
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	8, 75
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 358
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	96, 121
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	40, 105
Cfr13I	GGNCC	2 cut(s)	95, 120
CviJI	RGCY	8 cut(s)	86, 96, 121, 132, 170, 211, 358, 389
CviKI_1	RGCY	8 cut(s)	86, 96, 121, 132, 170, 211, 358, 389
DdeI	CTNAG	3 cut(s)	17, 128, 362
DpnI	GATC	2 cut(s)	10, 77
DpnII	GATC	2 cut(s)	8, 75
Eam1104I	CTCTTC	4 cut(s)	201, 278, 303, 327
EarI	CTCTTC	4 cut(s)	201, 278, 303, 327
Eco31I	GGTCTC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	158
FaiI	YATR	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	108, 359
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	108, 359
GluI	GCNGC	2 cut(s)	108, 359
HaeIII	GGCC	2 cut(s)	96, 121
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	7 cut(s)	115, 126, 146, 227, 244, 337, 392
HphI	GGTGA	2 cut(s)	141, 147
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	75, 282, 397
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 358
HpyF3I	CTNAG	3 cut(s)	17, 128, 362
Kzo9I	GATC	2 cut(s)	8, 75
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	2 cut(s)	10, 77
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	2 cut(s)	8, 75
MboII	GAAGA	5 cut(s)	41, 218, 295, 320, 344
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	5 cut(s)	222, 276, 323, 401, 423
MlyI	GAGTC	3 cut(s)	109, 120, 155
MnlI	CCTC	6 cut(s)	69, 108, 160, 163, 244, 279
MroXI	GAANNNNTTC	3 cut(s)	226, 276, 336
MspA1I	CMGCKG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	217, 358
NdeII	GATC	2 cut(s)	8, 75
NlaIV	GGNNCC	1 cut(s)	357
NmeAIII	GCCGAG	2 cut(s)	72, 97
NmuCI	GTSAC	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdmI	GAANNNNTTC	3 cut(s)	226, 276, 336
PfeI	GAWTC	4 cut(s)	227, 244, 337, 392
PkrI	GCNGC	2 cut(s)	109, 360
PleI	GAGTC	3 cut(s)	109, 120, 154
PpsI	GAGTC	3 cut(s)	109, 120, 154
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	95, 120
PsuI	RGATCY	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	371
SapI	GCTCTTC	1 cut(s)	201
SatI	GCNGC	2 cut(s)	108, 359
Sau3AI	GATC	2 cut(s)	8, 75
Sau96I	GGNCC	2 cut(s)	95, 120
SchI	GAGTC	3 cut(s)	109, 120, 155
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	3 cut(s)	134, 213, 391
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	235
Sse9I	AATT	5 cut(s)	222, 276, 323, 401, 423
SsiI	CCGC	2 cut(s)	101, 359
StyD4I	CCNGG	1 cut(s)	158
TaqI	TCGA	2 cut(s)	113, 372
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	5 cut(s)	222, 276, 323, 401, 423
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	4 cut(s)	227, 244, 337, 392
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	3 cut(s)	17, 219, 414
TspRI	CASTG	1 cut(s)	418
XagI	CCTNNNNNAGG	1 cut(s)	157
XapI	RAATTY	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	372
XmnI	GAANNNNTTC	3 cut(s)	226, 276, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.