Rmu_sc0028926.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028926.1
OG0011746
Physical Location & Seq
Forward (+)
545 .. 1264
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028926.1_g000001.1.cds

Sequence Viewer

Length: 492 bp
atgaaacagtctatcataagaaatgtctccctttatgctcgtactcgtcttctctctcctccctgctgtaaacccagttctaggactacccaactcgctcttccgactcggcccagattgagcttctactcgactgagtctcaatcacataaccaagaggtttccaaagatgaagaagacgacgtcagtaatgaagagctgaaaatgcagattgacgactactttaaaggaaatgacaaggcaataccaactatctttgaggcaattctgaagaggaagttaacagggaagcatgaacagactgataagaagttgatggaagaactttgcgggaaggggcagggatcgctgagtgacgaagaagaggaggatgaggaagagattgaatctgatttggatgagttgtatgggagtgatgagaaggctgctgatttgaatcaggcaatggataagttgatgaaggaaatgccaatcacgaaaagagaaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.69

Weight (kDa)

4.73

Isoelectric Point (pI)

58.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AciI CCGC 1 cut(s) 330
AclWI GGATC 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 2 cut(s) 386, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 2 cut(s) 123, 199
AluI AGCT 2 cut(s) 123, 199
Alw26I GTCTC 2 cut(s) 31, 144
AlwI GGATC 1 cut(s) 352
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 111
BbsI GAAGAC 2 cut(s) 41, 183
BbvI GCAGC 1 cut(s) 412
BccI CCATC 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 31, 144
BfaI CTAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 111
BmrI ACTGGG 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 69
BpiI GAAGAC 2 cut(s) 41, 183
BsaBI GATNNNNATC 1 cut(s) 435
BsaHI GRCGYC 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 450
Bse8I GATNNNNATC 1 cut(s) 435
BseGI GGATG 2 cut(s) 376, 403
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 2 cut(s) 126, 341
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 2 cut(s) 48, 380
BseXI GCAGC 1 cut(s) 412
BshFI GGCC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 2 cut(s) 31, 144
BsnI GGCC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 1 cut(s) 330
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 2 cut(s) 127, 342
BspPI GGATC 1 cut(s) 352
BspQI GCTCTTC 2 cut(s) 105, 189
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 1 cut(s) 75
BssMI GATC 1 cut(s) 344
BssNI GRCGYC 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 9
Bst6I CTCTTC 5 cut(s) 105, 189, 266, 357, 372
BstACI GRCGYC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 135, 350
BstF5I GGATG 2 cut(s) 376, 403
BstKTI GATC 1 cut(s) 347
BstMAI GTCTC 2 cut(s) 31, 144
BstMBI GATC 1 cut(s) 344
BstMWI GCNNNNNNNGC 2 cut(s) 205, 346
BstV1I GCAGC 1 cut(s) 412
BstV2I GAAGAC 2 cut(s) 41, 183
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 376, 403
Cfr13I GGNCC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 42
CviAII CATG 1 cut(s) 293
CviJI RGCY 4 cut(s) 112, 123, 199, 425
CviKI_1 RGCY 4 cut(s) 112, 123, 199, 425
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 2 cut(s) 135, 350
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
DraI TTTAAA 1 cut(s) 226
Eam1104I CTCTTC 5 cut(s) 105, 189, 266, 357, 372
EarI CTCTTC 5 cut(s) 105, 189, 266, 357, 372
Eco57I CTGAAG 1 cut(s) 290
FaeI CATG 1 cut(s) 296
FaiI YATR 5 cut(s) 17, 36, 150, 294, 408
FatI CATG 1 cut(s) 292
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 2 cut(s) 383, 410
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 426
HaeIII GGCC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 296
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 4 cut(s) 106, 137, 386, 436
HpaI GTTAAC 1 cut(s) 282
Hpy166II GTNNAC 2 cut(s) 71, 282
Hpy188I TCNGA 3 cut(s) 105, 270, 391
Hpy188III TCNNGA 1 cut(s) 475
Hpy8I GTNNAC 2 cut(s) 71, 282
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 3 cut(s) 328, 415, 454
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 346
HpyF3I CTNAG 2 cut(s) 135, 350
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 296
KspAI GTTAAC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 344
LguI GCTCTTC 2 cut(s) 105, 189
LpnPI CCDG 6 cut(s) 76, 88, 127, 270, 326, 425
Lsp1109I GCAGC 1 cut(s) 412
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 353
MalI GATC 1 cut(s) 346
MboI GATC 1 cut(s) 344
MluCI AATT 2 cut(s) 264, 487
MlyI GAGTC 2 cut(s) 100, 146
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 7 cut(s) 69, 151, 253, 267, 358, 361, 367
MseI TTAA 2 cut(s) 225, 281
MwoI GCNNNNNNNGC 2 cut(s) 205, 346
NdeII GATC 1 cut(s) 344
NlaIII CATG 1 cut(s) 296
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 353
PciSI GCTCTTC 2 cut(s) 105, 189
PfeI GAWTC 2 cut(s) 386, 436
PflFI GACNNNGTC 2 cut(s) 136, 182
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 2 cut(s) 100, 145
PpsI GAGTC 2 cut(s) 100, 145
PspPI GGNCC 1 cut(s) 111
PsrI GAACNNNNNNTAC 2 cut(s) 61, 93
PsyI GACNNNGTC 2 cut(s) 136, 182
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SapI GCTCTTC 2 cut(s) 105, 189
SaqAI TTAA 2 cut(s) 225, 281
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 1 cut(s) 344
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 2 cut(s) 100, 146
SetI ASST 4 cut(s) 125, 162, 186, 201
Sse9I AATT 2 cut(s) 264, 487
SsiI CCGC 1 cut(s) 330
SspMI CTAG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 9
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 131
TasI AATT 2 cut(s) 264, 487
TfiI GAWTC 2 cut(s) 386, 436
Tru1I TTAA 2 cut(s) 225, 281
Tru9I TTAA 2 cut(s) 225, 281
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 5 cut(s) 17, 186, 207, 309, 473
Tth111I GACNNNGTC 2 cut(s) 136, 182
XspI CTAG 1 cut(s) 81
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.