Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0011746

Physical Location & Seq

Genomic Coordinates Forward (+)

1565722 .. 1566852

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAAACAGTCTATCATAAGAAATGTCTCCCTTTATGCTCGTACTCGTCTTCTCTCTCCTCCCTGCTGCAAACCCAGTTCTAGGACTACCCAACTCGCTCTTCCGACTCGGCCCAGATTGAGCTTCTACTCGACTGAGTCTCAATCACATAACCAAGAGGTTTCCAAAGATGAAGAAGACGACGTCAGTAATGAAGAGCTGAAAATGCAGATTGACGACTACTTTAAAGGAAATGACAAGGCAATACCAACTATCTTTGAGGCAATTCTGAAGAGGAAGTTAACAGGGAAGCATGAACAGACTGATAAGAAGTTGATGGAAGAACTTTGCGGGAAGAGGCAGGGATCGCTGAGTGACGAAGAAGAGGAGGATGAGGAAGAGATTGAATCTGATTTGGATGAGTTGTATGGGAGTGATGAGAAGGCTGCTGATTTGAATCAGGCAATGGATAAGTTGATGAAGGAAATGCCAATCACGAAAAGAGAAAATAAGCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

19.15

Weight (kDa)

4.82

Isoelectric Point (pI)

62.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73770 AT1G73770 AT1G73770
fragaria_vesca	FvH4_5g16690
malus_domestica	MD06G1220600.v1.1
prunus_persica	Prupe.5G225000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0179411
rosa_laevigata	RLG00000005358
rosa_multiflora	Rmu_sc0000735.1_g000027 Rmu_sc0002581.1_g000002 Rmu_sc0012414.1_g000007 Rmu_sc0028926.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274040
rosa_rugosa	Rorug06G0424200
rosa_samantha	Rh7AG023600 Rh7BG023200 Rh7CG024600 Rh7DG024100
rosa_wichuraiana	Rw7G001910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	386, 436
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	3 cut(s)	123, 199, 493
AluI	AGCT	3 cut(s)	123, 199, 493
Alw26I	GTCTC	2 cut(s)	31, 144
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	66, 425
AspS9I	GGNCC	1 cut(s)	111
BbsI	GAAGAC	2 cut(s)	41, 183
BbvI	GCAGC	2 cut(s)	53, 412
BccI	CCATC	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	31, 144
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	2 cut(s)	67, 426
BlsI	GCNGC	2 cut(s)	68, 427
BmgT120I	GGNCC	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	69
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	2 cut(s)	41, 183
BsaBI	GATNNNNATC	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	435
BseGI	GGATG	2 cut(s)	376, 403
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	126, 341
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	2 cut(s)	48, 380
BseXI	GCAGC	2 cut(s)	53, 412
BshFI	GGCC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	31, 144
BsnI	GGCC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	344
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	127, 342
BspPI	GGATC	1 cut(s)	352
BspQI	GCTCTTC	2 cut(s)	105, 189
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	344
BssNI	GRCGYC	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	6 cut(s)	105, 189, 266, 329, 357, 372
BstACI	GRCGYC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	135, 350
BstF5I	GGATG	2 cut(s)	376, 403
BstKTI	GATC	1 cut(s)	347
BstMAI	GTCTC	2 cut(s)	31, 144
BstMBI	GATC	1 cut(s)	344
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 346
BstV1I	GCAGC	2 cut(s)	53, 412
BstV2I	GAAGAC	2 cut(s)	41, 183
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	376, 403
Cfr13I	GGNCC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	5 cut(s)	112, 123, 199, 425, 493
CviKI_1	RGCY	5 cut(s)	112, 123, 199, 425, 493
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	2 cut(s)	135, 350
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
DraI	TTTAAA	1 cut(s)	226
Eam1104I	CTCTTC	6 cut(s)	105, 189, 266, 329, 357, 372
EarI	CTCTTC	6 cut(s)	105, 189, 266, 329, 357, 372
Eco57I	CTGAAG	1 cut(s)	290
FaeI	CATG	1 cut(s)	296
FaiI	YATR	5 cut(s)	17, 36, 150, 294, 408
FatI	CATG	1 cut(s)	292
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	2 cut(s)	67, 426
FokI	GGATG	2 cut(s)	383, 410
Fsp4HI	GCNGC	2 cut(s)	67, 426
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	2 cut(s)	67, 426
HaeIII	GGCC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	4 cut(s)	106, 137, 386, 436
HpaI	GTTAAC	1 cut(s)	282
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	3 cut(s)	105, 270, 391
Hpy188III	TCNNGA	1 cut(s)	475
Hpy8I	GTNNAC	1 cut(s)	282
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	415, 454
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	69, 208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 346
HpyF3I	CTNAG	2 cut(s)	135, 350
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	296
KspAI	GTTAAC	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	344
LguI	GCTCTTC	2 cut(s)	105, 189
LpnPI	CCDG	6 cut(s)	76, 88, 127, 270, 326, 425
Lsp1109I	GCAGC	2 cut(s)	53, 412
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MluCI	AATT	1 cut(s)	264
MlyI	GAGTC	2 cut(s)	100, 146
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	8 cut(s)	69, 151, 253, 267, 330, 358, 361, 367
MseI	TTAA	2 cut(s)	225, 281
MwoI	GCNNNNNNNGC	2 cut(s)	205, 346
NdeII	GATC	1 cut(s)	344
NlaIII	CATG	1 cut(s)	296
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	353
PciSI	GCTCTTC	2 cut(s)	105, 189
PfeI	GAWTC	2 cut(s)	386, 436
PflFI	GACNNNGTC	2 cut(s)	136, 182
PkrI	GCNGC	2 cut(s)	68, 427
PleI	GAGTC	2 cut(s)	100, 145
PpsI	GAGTC	2 cut(s)	100, 145
PspPI	GGNCC	1 cut(s)	111
PsyI	GACNNNGTC	2 cut(s)	136, 182
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SapI	GCTCTTC	2 cut(s)	105, 189
SaqAI	TTAA	2 cut(s)	225, 281
SatI	GCNGC	2 cut(s)	67, 426
Sau3AI	GATC	1 cut(s)	344
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	2 cut(s)	100, 146
SetI	ASST	5 cut(s)	125, 162, 186, 201, 495
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	386, 436
Tru1I	TTAA	2 cut(s)	225, 281
Tru9I	TTAA	2 cut(s)	225, 281
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	66, 425
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	5 cut(s)	17, 186, 207, 309, 473
Tth111I	GACNNNGTC	2 cut(s)	136, 182
XspI	CTAG	1 cut(s)	81
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.