Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011746

Physical Location & Seq

Genomic Coordinates Reverse (-)

17403165 .. 17404537

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G225000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAACGACTTCAGCTTAGAAATCTGTGTCTCTACGCTCGTACTCGTCTTCTCTCTCCTTCCTGCTACAATCCGGGATCCCAACTCGCTCCACTCGCTGCTTCGACTCGGCCCAGACTTCGCTTCTACTCGACTGAGTCTTCATCGCACAACCAAGAGGAGGATGTCGGTAACGAAGAGCTGAAAATGCAAATTGACAAGTATTTTCGAGGGGATGAGGAGGCCATACCATCAATCTTTGAAGCAATTTTGAAGAGGAAGTTGACGGGGAAGCATGAAGAGGATGATAAAAAGCTCATGGAAGAAATTCCCGGGAAGAGGCAGGAGGAGCCACTGAGTGACATAGATGACGAACAAGAGACTAAATCTGATTTTGATGAAGGCTCTGACAGTGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.38

Weight (kDa)

4.88

Isoelectric Point (pI)

72.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73770 AT1G73770 AT1G73770
fragaria_vesca	FvH4_5g16690
malus_domestica	MD06G1220600.v1.1
prunus_persica	Prupe.5G225000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0179411
rosa_laevigata	RLG00000005358
rosa_multiflora	Rmu_sc0000735.1_g000027 Rmu_sc0002581.1_g000002 Rmu_sc0012414.1_g000007 Rmu_sc0028926.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274040
rosa_rugosa	Rorug06G0424200
rosa_samantha	Rh7AG023600 Rh7BG023200 Rh7CG024600 Rh7DG024100
rosa_wichuraiana	Rw7G001910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	72, 85
AcsI	RAATTY	1 cut(s)	306
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	160, 318
AgsI	TTSAA	2 cut(s)	242, 253
AluBI	AGCT	3 cut(s)	16, 181, 295
AluI	AGCT	3 cut(s)	16, 181, 295
Alw26I	GTCTC	2 cut(s)	35, 353
AlwI	GGATC	2 cut(s)	72, 85
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	110, 222
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	3 cut(s)	75, 312, 313
AvaI	CYCGRG	1 cut(s)	311
BamHI	GGATCC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	41, 132
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	238
BcnI	CCSGG	3 cut(s)	75, 312, 313
BcoDI	GTCTC	2 cut(s)	35, 353
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	3 cut(s)	75, 312, 313
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	79, 330
BmrFI	CCNGG	3 cut(s)	75, 312, 313
BpiI	GAAGAC	2 cut(s)	41, 132
BpuMI	CCSGG	3 cut(s)	75, 312, 313
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 318
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	3 cut(s)	169, 220, 289
BseLI	CCNNNNNNNGG	2 cut(s)	160, 318
BseMII	CTCAG	2 cut(s)	126, 326
BseRI	GAGGAG	3 cut(s)	173, 233, 341
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	112, 224
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	74, 312
BslI	CCNNNNNNNGG	2 cut(s)	160, 318
BsmAI	GTCTC	2 cut(s)	35, 353
BsnI	GGCC	2 cut(s)	112, 224
BsoBI	CYCGRG	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	77, 394
BspANI	GGCC	2 cut(s)	112, 224
BspCNI	CTCAG	2 cut(s)	127, 327
BspLI	GGNNCC	2 cut(s)	79, 330
BspPI	GGATC	2 cut(s)	72, 85
BspQI	GCTCTTC	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	2 cut(s)	77, 394
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	4 cut(s)	171, 248, 273, 311
BstDEI	CTNAG	3 cut(s)	17, 135, 335
BstF5I	GGATG	3 cut(s)	169, 220, 289
BstKTI	GATC	2 cut(s)	80, 397
BstMAI	GTCTC	2 cut(s)	35, 353
BstMBI	GATC	2 cut(s)	77, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 187, 328
BstSCI	CCNGG	3 cut(s)	73, 310, 311
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	2 cut(s)	41, 132
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	112, 224
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	3 cut(s)	169, 220, 289
BtsIMutI	CAGTG	2 cut(s)	332, 397
Cfr13I	GGNCC	1 cut(s)	111
Cfr9I	CCCGGG	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	2 cut(s)	275, 298
CviJI	RGCY	7 cut(s)	16, 112, 181, 224, 295, 331, 384
CviKI_1	RGCY	7 cut(s)	16, 112, 181, 224, 295, 331, 384
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	3 cut(s)	17, 135, 335
DpnI	GATC	2 cut(s)	79, 396
DpnII	GATC	2 cut(s)	77, 394
DraIII	CACNNNGTG	1 cut(s)	338
Eam1104I	CTCTTC	4 cut(s)	171, 248, 273, 311
EarI	CTCTTC	4 cut(s)	171, 248, 273, 311
Eco88I	CYCGRG	1 cut(s)	311
FaeI	CATG	2 cut(s)	278, 301
FaiI	YATR	4 cut(s)	227, 276, 299, 344
FatI	CATG	2 cut(s)	274, 297
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	3 cut(s)	176, 227, 296
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	112, 224
HapII	CCGG	2 cut(s)	74, 312
Hin1II	CATG	2 cut(s)	278, 301
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HinfI	GANTC	2 cut(s)	106, 137
HpaII	CCGG	2 cut(s)	74, 312
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	2 cut(s)	370, 388
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	69, 374
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 187, 328
HpyF3I	CTNAG	3 cut(s)	17, 135, 335
Hsp92II	CATG	2 cut(s)	278, 301
Kzo9I	GATC	2 cut(s)	77, 394
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	2 cut(s)	94, 328
LpnPI	CCDG	5 cut(s)	76, 87, 127, 308, 325
Lsp1109I	GCAGC	1 cut(s)	85
MaeIII	GTNAC	2 cut(s)	170, 338
MalI	GATC	2 cut(s)	79, 396
MboI	GATC	2 cut(s)	77, 394
MboII	GAAGA	7 cut(s)	41, 132, 188, 265, 290, 314, 328
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	3 cut(s)	192, 246, 306
MlyI	GAGTC	2 cut(s)	100, 146
MnlI	CCTC	9 cut(s)	151, 154, 203, 211, 214, 249, 274, 312, 319
MroXI	GAANNNNTTC	1 cut(s)	306
MspI	CCGG	2 cut(s)	74, 312
MspR9I	CCNGG	3 cut(s)	75, 312, 313
MwoI	GCNNNNNNNGC	3 cut(s)	95, 187, 328
NciI	CCSGG	3 cut(s)	75, 312, 313
NdeII	GATC	2 cut(s)	77, 394
NlaIII	CATG	2 cut(s)	278, 301
NlaIV	GGNNCC	2 cut(s)	79, 330
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	306
PflFI	GACNNNGTC	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	2 cut(s)	100, 145
PpsI	GAGTC	2 cut(s)	100, 145
PspN4I	GGNNCC	2 cut(s)	79, 330
PspPI	GGNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	136
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	171
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	77, 394
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	2 cut(s)	100, 146
ScrFI	CCNGG	3 cut(s)	75, 312, 313
SetI	ASST	3 cut(s)	18, 183, 297
SmaI	CCCGGG	1 cut(s)	313
Sse9I	AATT	3 cut(s)	192, 246, 306
StyD4I	CCNGG	3 cut(s)	73, 310, 311
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	3 cut(s)	104, 131, 208
TasI	AATT	3 cut(s)	192, 246, 306
TscAI	CASTG	2 cut(s)	339, 397
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	4 cut(s)	17, 132, 291, 393
TspMI	CCCGGG	1 cut(s)	311
TspRI	CASTG	2 cut(s)	339, 397
Tth111I	GACNNNGTC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	306
XmaI	CCCGGG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.