Rmu_sc0012414.1_g000007

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012414.1
Physical Location & Seq
Reverse (-)
25445 .. 27728
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012414.1_g000007.1.cds

Sequence Viewer

Length: 267 bp
atgattgtagcaatcaggggagatattgacatcagggggagggatgatgtctccatgttcgatctcgaagagggaaggacgggttgggctctttttgtcattcgcccaggggatcgctcatcgctgagtgtcgatgaagaggaggatgaggaagaggctgaatctgatttggaagagttgtattggagtgatgagaacgctgctgatttgaatcaggtactggataagttgatgaaggaaatgacaatcatgaacagagaaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.17

Weight (kDa)

4.05

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 120
AfaI GTAC 1 cut(s) 219
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 106
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 55
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 106, 107
Bse1I ACTGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 106, 107
BseGI GGATG 2 cut(s) 49, 151
BseJI GATNNNNATC 1 cut(s) 210
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 61, 112
BspCNI CTCAG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 249
BspPI GGATC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 106, 107
BssMI GATC 2 cut(s) 61, 112
Bst2UI CCWGG 1 cut(s) 108
Bst6I CTCTTC 4 cut(s) 63, 132, 147, 168
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 49, 151
BstKTI GATC 2 cut(s) 64, 115
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 61, 112
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 49, 151
CaiI CAGNNNCTG 1 cut(s) 220
CciI TCATGA 1 cut(s) 249
Csp6I GTAC 1 cut(s) 218
CviAII CATG 2 cut(s) 55, 250
CviJI RGCY 2 cut(s) 89, 158
CviKI_1 RGCY 2 cut(s) 89, 158
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 125
DpnI GATC 2 cut(s) 63, 114
DpnII GATC 2 cut(s) 61, 112
Eam1104I CTCTTC 4 cut(s) 63, 132, 147, 168
EarI CTCTTC 4 cut(s) 63, 132, 147, 168
Eco24I GRGCYC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 2 cut(s) 58, 253
FaiI YATR 2 cut(s) 56, 251
FatI CATG 2 cut(s) 54, 249
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 2 cut(s) 56, 158
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 58, 253
HinfI GANTC 2 cut(s) 161, 211
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 65, 250
HpyAV CCTTC 2 cut(s) 69, 229
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 2 cut(s) 58, 253
Kzo9I GATC 2 cut(s) 61, 112
LpnPI CCDG 5 cut(s) 19, 93, 120, 200, 206
Lsp1109I GCAGC 1 cut(s) 187
MalI GATC 2 cut(s) 63, 114
MboI GATC 2 cut(s) 61, 112
MboII GAAGA 4 cut(s) 80, 149, 164, 185
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 262
MnlI CCTC 6 cut(s) 33, 64, 133, 136, 142, 148
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
NdeII GATC 2 cut(s) 61, 112
NlaIII CATG 2 cut(s) 58, 253
PagI TCATGA 1 cut(s) 249
PasI CCCWGGG 1 cut(s) 107
PfeI GAWTC 2 cut(s) 161, 211
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 220
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 61, 112
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 91
SetI ASST 1 cut(s) 219
Sse9I AATT 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 106
TaqI TCGA 3 cut(s) 60, 66, 132
TasI AATT 1 cut(s) 262
TfiI GAWTC 2 cut(s) 161, 211
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 150, 248, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.