FvH4_5g16980
ERF Family

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018848
Physical Location & Seq
Reverse (-)
9675441 .. 9676548
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16980.t1

Sequence Viewer

Length: 429 bp
ATGGAGTGCTTCCTGCATGCCAGGGCACAAGAGACAGTACATGGAGCACTAATGGTGCTCACTATTGCAGGCCGACCTGATGGTACGCCTCACTCACATGCTTCATCAAACGTTACCTATCAACTTTTAGGAACTTGCCTCAGTGAAATGGCTAAGAGGGGAGTAGTTAGTGAAGATAAACTAGATGCATTTAACATTCCAATTTACTGCATGTCTCCCCAAGAACTGGAAGCTGCTGTTGAACTAAATGGATGTTTTAGCATAGAGAGTATGGAGATCTTACCTCATGTCCCAACACTTGACTGTGTCTCTGACACTGCTCCACTCGTTGCATTGCATGTTAGAGCTGCTACAGAAGGACAGTTTAAGCAGCATTTTGGGGATGAAATCTTAGACGAGCTCTTCGACTTAATCACAATACTACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

143

Amino Acids

15.52

Weight (kDa)

4.65

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 137 9.3e-34 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018848)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g16980
rosa_chinensis RchiOBHm_Chr3g0486021
rosa_laevigata RLG00000023111
rosa_multiflora Rmu_co8379655.1_g000001 Rmu_sc0006229.1_g000003
rosa_samantha Rh3CG306600 Rh3DG302800 Rh5CG266800 Rh5CG570100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 226
AclI AACGTT 1 cut(s) 111
AfaI GTAC 2 cut(s) 39, 85
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 3 cut(s) 233, 347, 400
AluI AGCT 3 cut(s) 233, 347, 400
Alw21I GWGCWC 3 cut(s) 49, 60, 402
Alw26I GTCTC 3 cut(s) 26, 219, 313
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 3 cut(s) 233, 347, 370
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
BaeGI GKGCMC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 402
Bbv12I GWGCWC 3 cut(s) 49, 60, 402
BbvI GCAGC 3 cut(s) 220, 334, 382
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 3 cut(s) 26, 219, 313
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 351
BglII AGATCT 1 cut(s) 276
BisI GCNGC 3 cut(s) 234, 348, 371
BlsI GCNGC 3 cut(s) 235, 349, 372
Bme1390I CCNGG 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 257, 388
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 3 cut(s) 220, 334, 382
BshFI GGCC 1 cut(s) 72
BsiHKAI GWGCWC 3 cut(s) 49, 60, 402
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 3 cut(s) 26, 219, 313
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 1 cut(s) 72
Bsp1286I GDGCHC 4 cut(s) 28, 49, 60, 402
Bsp143I GATC 1 cut(s) 276
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 332
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 3 cut(s) 37, 305, 363
Bst6I CTCTTC 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 18, 70
BstDEI CTNAG 3 cut(s) 140, 153, 391
BstF5I GGATG 2 cut(s) 257, 388
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 3 cut(s) 26, 219, 313
BstMBI GATC 1 cut(s) 276
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 4 cut(s) 20, 101, 214, 341
BstSCI CCNGG 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 3 cut(s) 220, 334, 382
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 2 cut(s) 257, 388
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 148, 315
Cac8I GCNNGC 2 cut(s) 18, 70
Csp6I GTAC 2 cut(s) 38, 84
CviAII CATG 6 cut(s) 17, 41, 98, 211, 287, 338
CviJI RGCY 5 cut(s) 72, 152, 233, 347, 400
CviKI_1 RGCY 5 cut(s) 72, 152, 233, 347, 400
CviQI GTAC 2 cut(s) 38, 84
DdeI CTNAG 3 cut(s) 140, 153, 391
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 402
FaeI CATG 6 cut(s) 20, 44, 101, 214, 290, 341
FaiI YATR 8 cut(s) 18, 42, 99, 212, 263, 272, 288, 339
FaqI GGGAC 1 cut(s) 275
FatI CATG 6 cut(s) 16, 40, 97, 210, 286, 337
Fnu4HI GCNGC 3 cut(s) 234, 348, 371
FokI GGATG 2 cut(s) 264, 395
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 3 cut(s) 234, 348, 371
FspBI CTAG 1 cut(s) 182
GluI GCNGC 3 cut(s) 234, 348, 371
HaeIII GGCC 1 cut(s) 72
Hin1II CATG 6 cut(s) 20, 44, 101, 214, 290, 341
Hpy188I TCNGA 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 3 cut(s) 37, 305, 363
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 6 cut(s) 16, 68, 188, 210, 332, 337
HpyF3I CTNAG 3 cut(s) 140, 153, 391
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 6 cut(s) 20, 44, 101, 214, 290, 341
Kzo9I GATC 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 2 cut(s) 44, 325
LpnPI CCDG 6 cut(s) 7, 26, 34, 54, 90, 212
Lsp1109I GCAGC 3 cut(s) 220, 334, 382
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 2 cut(s) 185, 394
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 4 cut(s) 28, 49, 60, 402
MluCI AATT 1 cut(s) 201
MnlI CCTC 4 cut(s) 99, 149, 150, 294
Mph1103I ATGCAT 1 cut(s) 190
MseI TTAA 3 cut(s) 192, 366, 410
MslI CAYNNNNRTG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
NdeII GATC 1 cut(s) 276
NlaIII CATG 6 cut(s) 20, 44, 101, 214, 290, 341
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 4 cut(s) 20, 101, 214, 341
PaeI GCATGC 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PflFI GACNNNGTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 3 cut(s) 235, 349, 372
Psp124BI GAGCTC 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 276
PsyI GACNNNGTC 1 cut(s) 305
RsaI GTAC 2 cut(s) 39, 85
RsaNI GTAC 2 cut(s) 38, 84
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 402
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 3 cut(s) 192, 366, 410
SatI GCNGC 3 cut(s) 234, 348, 371
Sau3AI GATC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 4 cut(s) 28, 49, 60, 402
SetI ASST 7 cut(s) 79, 114, 119, 235, 286, 349, 402
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 96
SphI GCATGC 1 cut(s) 20
Sse9I AATT 1 cut(s) 201
SspMI CTAG 1 cut(s) 182
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 3 cut(s) 37, 305, 363
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 405
TasI AATT 1 cut(s) 201
TatI WGTACW 1 cut(s) 37
Tru1I TTAA 3 cut(s) 192, 366, 410
Tru9I TTAA 3 cut(s) 192, 366, 410
TscAI CASTG 2 cut(s) 148, 322
TseI GCWGC 3 cut(s) 233, 347, 370
TspDTI ATGAA 2 cut(s) 93, 399
TspRI CASTG 2 cut(s) 148, 322
Tth111I GACNNNGTC 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 226
XceI RCATGY 4 cut(s) 20, 101, 214, 341
XspI CTAG 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.