Rh3DG302800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018848
Physical Location & Seq
Reverse (-)
32013348 .. 32013515
168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG302800.1

Sequence Viewer

Length: 168 bp
ATGGAGAAGGAGATTACAAGCAGGGTGACATGCCAGGGATCGTCAGAGGACGTTCTGGAGATGACGGATTTGCTGGTAGAATCACTCGACCCGGCGGAGGAGTCTGCTGCGGCGGCGGTGTGTGGGTCAGTGAAGGTGGTGAACTGGAATAGGGCGGGGTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

5.83

Weight (kDa)

4.18

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018848)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g16980
rosa_chinensis RchiOBHm_Chr3g0486021
rosa_laevigata RLG00000023111
rosa_multiflora Rmu_co8379655.1_g000001 Rmu_sc0006229.1_g000003
rosa_samantha Rh3CG306600 Rh3DG302800 Rh5CG266800 Rh5CG570100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 159
AciI CCGC 5 cut(s) 95, 110, 113, 116, 155
AclWI GGATC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 97
AjnI CCWGG 1 cut(s) 33
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 37, 151
BaeGI GKGCMC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 35
BcnI CCSGG 1 cut(s) 92
BisI GCNGC 3 cut(s) 108, 111, 114
BlsI GCNGC 3 cut(s) 109, 112, 115
Bme1390I CCNGG 2 cut(s) 35, 92
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 35, 92
BpmI CTGGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 1 cut(s) 94
BshNI GGYRCC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 5 cut(s) 95, 110, 113, 116, 155
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 165
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 33, 90
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 135
CviAII CATG 1 cut(s) 30
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 33
FaiI YATR 1 cut(s) 31
FatI CATG 1 cut(s) 29
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 108, 111, 114
Fsp4HI GCNGC 3 cut(s) 108, 111, 114
GluI GCNGC 3 cut(s) 108, 111, 114
GsuI CTGGAG 1 cut(s) 77
HapII CCGG 1 cut(s) 92
Hin1II CATG 1 cut(s) 33
HinfI GANTC 2 cut(s) 80, 101
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 37, 151
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 1 cut(s) 33
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 7 cut(s) 7, 20, 41, 47, 59, 105, 130
Lsp1109I GCAGC 1 cut(s) 94
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 164
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 40, 91
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 35, 92
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 92
NdeII GATC 1 cut(s) 38
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 25
NspI RCATGY 1 cut(s) 33
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 109, 112, 115
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 161
SatI GCNGC 3 cut(s) 108, 111, 114
Sau3AI GATC 1 cut(s) 38
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 35, 92
SduI GDGCHC 1 cut(s) 164
SetI ASST 2 cut(s) 54, 138
SsiI CCGC 5 cut(s) 95, 110, 113, 116, 155
StyD4I CCNGG 2 cut(s) 33, 90
TaiI ACGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 87
TauI GCSGC 2 cut(s) 113, 116
TfiI GAWTC 1 cut(s) 80
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 135
XceI RCATGY 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.