Rmu_sc0006229.1_g000003

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006229.1
OG0018848
Physical Location & Seq
Forward (+)
6966 .. 8361
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006229.1_g000003.1.cds

Sequence Viewer

Length: 438 bp
atggaacacttgcctactgtgatagaacaagatactgtttcaaaaaatagcaaactcattgcatctcatacgagagctgtcatggagggactcttcaagcagcatttcggagaagaaatcttagacgagctcttcgacttgtttcacaagaaagttgaagagcagcactccgcatttgagtcagggaaggcaggggacatctttattgtgcttaaacgcaagggatctggcgctgggattcttgtgccgatggtgagtgtttgcctggaaatggagaaggacattacaagcagggtgacatgccagggatcgtcagaggacgttctggagatgacggatttgctggtaaaatcactcgacccggcggaggagtctgctgcggcggcggtgtgtgggtcagtgaaggtggtgaactggaatagggcggggtgcccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

145

Amino Acids

15.82

Weight (kDa)

5.08

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018848)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g16980
rosa_chinensis RchiOBHm_Chr3g0486021
rosa_laevigata RLG00000023111
rosa_multiflora Rmu_co8379655.1_g000001 Rmu_sc0006229.1_g000003
rosa_samantha Rh3CG306600 Rh3DG302800 Rh5CG266800 Rh5CG570100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 429
AciI CCGC 6 cut(s) 171, 365, 380, 383, 386, 425
AclWI GGATC 2 cut(s) 232, 316
AfiI CCNNNNNNNGG 2 cut(s) 271, 367
AgsI TTSAA 3 cut(s) 42, 97, 158
AjnI CCWGG 2 cut(s) 264, 303
AluBI AGCT 2 cut(s) 77, 130
AluI AGCT 2 cut(s) 77, 130
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 2 cut(s) 232, 316
ApeKI GCWGC 3 cut(s) 100, 163, 377
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspLEI GCGC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 3 cut(s) 265, 307, 421
BaeGI GKGCMC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 429
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 112, 175, 364
BccI CCATC 1 cut(s) 244
BciT130I CCWGG 2 cut(s) 266, 305
BcnI CCSGG 1 cut(s) 362
BfoI RGCGCY 1 cut(s) 234
BisI GCNGC 5 cut(s) 101, 164, 378, 381, 384
BlsI GCNGC 5 cut(s) 102, 165, 379, 382, 385
Bme1390I CCNGG 3 cut(s) 266, 305, 362
BmiI GGNNCC 1 cut(s) 431
BmrFI CCNGG 3 cut(s) 266, 305, 362
BmsI GCATC 1 cut(s) 71
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpmI CTGGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 367
Bse1I ACTGG 1 cut(s) 419
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 2 cut(s) 266, 305
BseDI CCNNGG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 271, 367
BseMI GCAATG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 419
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 3 cut(s) 112, 175, 364
BseYI CCCAGC 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 2 cut(s) 102, 209
BslI CCNNNNNNNGG 2 cut(s) 271, 367
BsmFI GGGAC 2 cut(s) 102, 209
Bsp1286I GDGCHC 2 cut(s) 132, 434
Bsp143I GATC 2 cut(s) 224, 308
BspACI CCGC 6 cut(s) 171, 365, 380, 383, 386, 425
BspLI GGNNCC 1 cut(s) 431
BspPI GGATC 2 cut(s) 232, 316
BspQI GCTCTTC 2 cut(s) 137, 153
BspT107I GGYRCC 1 cut(s) 429
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 224, 308
Bst2UI CCWGG 2 cut(s) 266, 305
Bst4CI ACNGT 2 cut(s) 19, 37
Bst6I CTCTTC 3 cut(s) 98, 137, 153
BstDEI CTNAG 2 cut(s) 121, 435
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 2 cut(s) 227, 311
BstMBI GATC 2 cut(s) 224, 308
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 2 cut(s) 266, 305
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 3 cut(s) 264, 303, 360
BstSLI GKGCMC 1 cut(s) 434
BstV1I GCAGC 3 cut(s) 112, 175, 364
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 405
CfoI GCGC 1 cut(s) 233
CviAII CATG 2 cut(s) 82, 300
CviJI RGCY 2 cut(s) 77, 130
CviKI_1 RGCY 2 cut(s) 77, 130
DdeI CTNAG 2 cut(s) 121, 435
DpnI GATC 2 cut(s) 226, 310
DpnII GATC 2 cut(s) 224, 308
Eam1104I CTCTTC 3 cut(s) 98, 137, 153
EarI CTCTTC 3 cut(s) 98, 137, 153
EciI GGCGGA 1 cut(s) 380
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 264, 303
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 2 cut(s) 85, 303
FaiI YATR 3 cut(s) 69, 83, 301
FaqI GGGAC 2 cut(s) 102, 209
FatI CATG 2 cut(s) 81, 299
FauI CCCGC 1 cut(s) 418
Fnu4HI GCNGC 5 cut(s) 101, 164, 378, 381, 384
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 5 cut(s) 101, 164, 378, 381, 384
GlaI GCGC 1 cut(s) 232
GluI GCNGC 5 cut(s) 101, 164, 378, 381, 384
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 234
HapII CCGG 1 cut(s) 362
HhaI GCGC 1 cut(s) 233
Hin1II CATG 2 cut(s) 85, 303
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 4 cut(s) 90, 179, 238, 371
HpaII CCGG 1 cut(s) 362
HphI GGTGA 3 cut(s) 265, 307, 421
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 2 cut(s) 110, 316
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 3 cut(s) 181, 271, 397
HpyCH4III ACNGT 2 cut(s) 19, 37
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 121, 435
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 2 cut(s) 85, 303
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 2 cut(s) 224, 308
LguI GCTCTTC 2 cut(s) 137, 153
Lsp1109I GCAGC 3 cut(s) 112, 175, 364
LweI GCATC 1 cut(s) 71
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 226, 310
MboI GATC 2 cut(s) 224, 308
MboII GAAGA 4 cut(s) 85, 124, 125, 170
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 2 cut(s) 132, 434
MlyI GAGTC 3 cut(s) 84, 188, 380
MnlI CCTC 3 cut(s) 79, 310, 361
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 3 cut(s) 266, 305, 362
MvaI CCWGG 2 cut(s) 266, 305
MwoI GCNNNNNNNGC 1 cut(s) 383
NciI CCSGG 1 cut(s) 362
NdeII GATC 2 cut(s) 224, 308
NlaIII CATG 2 cut(s) 85, 303
NlaIV GGNNCC 1 cut(s) 431
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 303
PciSI GCTCTTC 2 cut(s) 137, 153
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 5 cut(s) 102, 165, 379, 382, 385
PleI GAGTC 3 cut(s) 84, 187, 379
PpsI GAGTC 3 cut(s) 84, 187, 379
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 264, 303
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 2 cut(s) 264, 303
PspN4I GGNNCC 1 cut(s) 431
PsuI RGATCY 1 cut(s) 224
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 2 cut(s) 137, 153
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 5 cut(s) 101, 164, 378, 381, 384
Sau3AI GATC 2 cut(s) 224, 308
SchI GAGTC 3 cut(s) 84, 188, 380
ScrFI CCNGG 3 cut(s) 266, 305, 362
SduI GDGCHC 2 cut(s) 132, 434
SetI ASST 4 cut(s) 79, 132, 324, 408
SfaNI GCATC 1 cut(s) 71
SsiI CCGC 6 cut(s) 171, 365, 380, 383, 386, 425
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 264, 303, 360
TaaI ACNGT 2 cut(s) 19, 37
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 135, 357
TauI GCSGC 2 cut(s) 383, 386
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 3 cut(s) 100, 163, 377
Tsp45I GTSAC 1 cut(s) 295
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 1 cut(s) 405
XceI RCATGY 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.