RLG00000023111

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018848
Physical Location & Seq
Forward (+)
18297638 .. 18298216
579 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023111

Sequence Viewer

Length: 384 bp
ATGGAGTGCTTTTTGCATGCCAGGGCACAAGAGACAATACATGGAGGATTGATGGGAGTAGTCAGCGAGGAGAAAATAGATTCATTCAATGTACCTATATACTATGTGTGTCCCCGAGAACTGGAAGCTGCTGTAGAACAAAATGGATGTTTTAGCATAGAGATAATGGAACACTTACCTACTGTGATGGCACCTGACACTATTTCAAAAAACAGCAAACTCTTTGCATCTCATACGAGAGCTGTCATGGAGGGACTCTTCATGCAGCATTTCGGAGAAGAAATATTAGATGAGCTCTTCAACTTGTTTCACAAGAAAGTTGAAAAGAAGCACTCCTCATTTGAGTCAAGCCGGGAAGGGAGTGGACATCCTTATTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

128

Amino Acids

14.4

Weight (kDa)

5.41

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 19 - 113 2.4e-23 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018848)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g16980
rosa_chinensis RchiOBHm_Chr3g0486021
rosa_laevigata RLG00000023111
rosa_multiflora Rmu_co8379655.1_g000001 Rmu_sc0006229.1_g000003
rosa_samantha Rh3CG306600 Rh3DG302800 Rh5CG266800 Rh5CG570100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 4 cut(s) 88, 207, 301, 323
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 3 cut(s) 128, 242, 295
AluI AGCT 3 cut(s) 128, 242, 295
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 128, 265
AsuC2I CCSGG 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 115, 277
BccI CCATC 2 cut(s) 46, 181
BciT130I CCWGG 1 cut(s) 22
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 129, 266
BlsI GCNGC 2 cut(s) 130, 267
Bme1390I CCNGG 2 cut(s) 22, 353
BmeT110I CYCGRG 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 22, 353
BmsI GCATC 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 152, 367
BseLI CCNNNNNNNGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 83, 325
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 2 cut(s) 115, 277
BshNI GGYRCC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 352
BslFI GGGAC 2 cut(s) 96, 267
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 2 cut(s) 96, 267
BsoBI CYCGRG 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 28, 297
BspLI GGNNCC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 2 cut(s) 263, 302
BstC8I GCNNGC 1 cut(s) 18
BstF5I GGATG 2 cut(s) 152, 367
BstMAI GTCTC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 20, 351
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 115, 277
BtsCI GGATG 2 cut(s) 152, 367
Cac8I GCNNGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 92
CviAII CATG 4 cut(s) 17, 41, 247, 262
CviJI RGCY 4 cut(s) 128, 242, 295, 351
CviKI_1 RGCY 4 cut(s) 128, 242, 295, 351
CviQI GTAC 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 263, 302
EarI CTCTTC 2 cut(s) 263, 302
Ecl136II GAGCTC 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 297
FaeI CATG 4 cut(s) 20, 44, 250, 265
FaiI YATR 9 cut(s) 18, 42, 98, 100, 105, 158, 234, 248, 263
FaqI GGGAC 2 cut(s) 96, 267
FatI CATG 4 cut(s) 16, 40, 246, 261
Fnu4HI GCNGC 2 cut(s) 129, 266
FokI GGATG 2 cut(s) 159, 354
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 2 cut(s) 129, 266
GluI GCNGC 2 cut(s) 129, 266
HapII CCGG 1 cut(s) 352
Hin1II CATG 4 cut(s) 20, 44, 250, 265
HinfI GANTC 3 cut(s) 80, 255, 344
HpaII CCGG 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 275
Hpy8I GTNNAC 1 cut(s) 365
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 16, 227, 265
Hsp92II CATG 4 cut(s) 20, 44, 250, 265
LguI GCTCTTC 1 cut(s) 302
LpnPI CCDG 5 cut(s) 7, 34, 107, 207, 365
Lsp1109I GCAGC 2 cut(s) 115, 277
LweI GCATC 1 cut(s) 236
MboII GAAGA 3 cut(s) 250, 289, 290
MhlI GDGCHC 2 cut(s) 28, 297
MlyI GAGTC 2 cut(s) 249, 353
MnlI CCTC 4 cut(s) 38, 61, 244, 346
MseI TTAA 1 cut(s) 382
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 2 cut(s) 22, 353
MvaI CCWGG 1 cut(s) 22
NciI CCSGG 1 cut(s) 353
NlaIII CATG 4 cut(s) 20, 44, 250, 265
NlaIV GGNNCC 1 cut(s) 192
NspI RCATGY 1 cut(s) 20
PaeI GCATGC 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 130, 267
PleI GAGTC 2 cut(s) 249, 352
PpsI GAGTC 2 cut(s) 249, 352
Psp124BI GAGCTC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 192
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SacI GAGCTC 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 2 cut(s) 129, 266
SchI GAGTC 2 cut(s) 249, 353
ScrFI CCNGG 2 cut(s) 22, 353
SduI GDGCHC 2 cut(s) 28, 297
SetI ASST 6 cut(s) 97, 130, 181, 196, 244, 297
SfaNI GCATC 1 cut(s) 236
SfcI CTRYAG 1 cut(s) 132
SphI GCATGC 1 cut(s) 20
SspI AATATT 1 cut(s) 285
SstI GAGCTC 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 20, 351
TaaI ACNGT 1 cut(s) 184
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TseI GCWGC 2 cut(s) 128, 265
TspDTI ATGAA 2 cut(s) 72, 250
XceI RCATGY 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.