FvH4_5g17661

NF-X1-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012624
Physical Location & Seq
Forward (+)
10103203 .. 10107698
4496 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17661.t1

Sequence Viewer

Length: 2391 bp
ATGCATTGTCCAAACATGGATTGGGATTCTCAGCTCAGTTCTGCCACTTCCTCTAATCAGTTGAAGGAGACATGGAAGTATACACTTCTTTTGTCATTTCAGAGCCTTGGAGTGTTATATGGTCAAATGAGTACTGCGCCCTTATATGTCTTTGGGACAATTCATGCAAAAGATATCAAATCGGAGGATACAGTTTATGAACTATTCTCCTTCATTTTCTGGACTATGAGCATCATTTCTTTTCTGAAGTACGCCTGTATAGTATTACGAGCTGATGATAATGGAGAAGGTGGTACTTTCGCTCTGTACTCACTCTTGTGTAGACATGCCAAAGTGGGTTTGCTTCCAAATGACAAAAGTTCCAATGAGGTTATGCATTATGAGAGGGAAATACCTTTCTGGATTAAGGTGGAATCGAGGGCTAAAAGAGCCATTGAAAAACATAAGAGTAGTCACTATGTCATGTTGGTCCTGGCTCTGTTAGGTTCCTGCATGACAATCGGCATTGGGGTGCTTACCCCAGCTCTTTCGGTCTATTCAGCTTCAACAGGTGTTCAAAGATCACTGTCAGATATGGCCAAAAAATTTTCATCTTCGGAAAATAAACAAGATTCACTAGCAAAAGCTTTTAAAGATTATGTACCAGTTCCTTTGGCATCTGCTATATTGGTGTGCCTCTTCACGCTCCAGCATTACGGGACACGTAAAATTGGGTTTATGTTTGCTCCGATTATCATTATTTGGCTGATATGTATTGGTGGAGTGGGTATATATAATATTTTCTACTGGGACAGAAAAATTATCCATGCAATCTCTCCAGTATACATGTACAGATTTGTTAGGAACATTAACGTTGGCCGTTGGAGAGCATTAGGCAGCATAGTTCTATGTGTAGCAGGGTCAGAGGCCATGTACGCAGATCTAGGTCACTTCAGAAAGAAATCCATCAAGATTACATTTGTATGCCTCATCTATCCTGTTCTTGTTCTATGCTATGCCGGTCAGGCTGCATTTATCTCCAAAAACTTTCATGATGATGATTACAATCATCTCAGTGTGTCAGTTCCTTTATCAGTTCGACACTGGTTCACTGCATTATCCCTACTTGCTTCAGCTGTCGGAAGTCAAGCCACCATAACGGCCAGTTTCTCCATCATAAATCAGTGCCTGGCACTTGGTTGTTTTCCCAGAGTAAAAGTTATTCATACATCAGATAAGATACACGGGCAGGTTTATATTCCCGATATCAACTGGATACTGATGGTTCTATGCCTTACTGTTACAATTGGTTTCCATAATATTGAGAAAATTGGCAATGCAACAGGTTTGGCCGTAATTTCTGCAATGGTTGTAACAACTTGTCTCATGTCACTGGTGATTGCCTTATACTGGGAGAAGAGTTTGTTTGAATCTATCTGTTTTCTACTATTCTTCGGCTTCATTGAGGCGATGTATGTGTCAGCTTGTATTTTGAATTTCCACAAAGGAGCTTGGTATTTAGTTTTCCTATTGGCATTGTCCTTGACTATCATGCTTTCATGGCATTACGGAACCAAGAAGAAGCTTGAATTCGATTTAACAAACAAGGTGTCTGCAGAATGGCTTGTAGCTATTAGCCCAGCACTAGGAGTTACCAGGGTACCTGGCATTGGTTTCATTTATACTGATATAGTCTCAGGAATTCCAGCTTTCTTCTCACACTTTATTACGAATCTTCCTGCATTTCATCAAGTTTTGATCTTTGTGTCCTTCAAGTCTCTACCAGTTCCCTATGTCCCTGCAACTCGGAGGTACCTTGTGGGAAGGATCGGGCCAAAAGATCTTAAAATATATCGTTGTGTGGTGAGATATGGATATTGTGATCACATTAGAGACACTGATGATTTTGAGGAAGAGATTATTGGTTCGATTGGAGAATTCATTTCCGTGGAAGAAAATGACTTTGACAATTCATTTCAAGATAGAATGATCATAGTTGGCAAGCCACCATCAAATGGAAGTGCTTTGATTCCTTTAAGTGAGATTACCTCATGTGAGGACTCAGTGAGCTTGGTGCACAGTGAAAGCCGGCTAGGTACATTGGCTGATGCATGTGAGAGTGGTTTGGTTTCGATGCAGAGAAAAAAAGTCCGCTTCATGCTGCCTCCGAATAGTCCTAAGATGCGAGTATCTGTTAGGGAGGAGCTTCAAGAACTGATTGATGCTAGGGAGAGTGGTGCTGCATATTTCTTGGGTCAGGTGCATTTGGCAGTTCGTGACGGCTCAAACATTTTCAAGCGGTTACTGATCATGACTTACGTTTTGAGTGAGAAAAACTGCAGAGAGCCTCCCGTTGCACTCAACATTCCTCATGCTGCTCTTGTTGAGGTTGGTATGGTCTGTAGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 map05165
Pfam Domains
Protein Families
K_trans R3H zf-NF-X1

Protein Analysis

797

Amino Acids

88.99

Weight (kDa)

8.41

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K_trans PF02705 32 - 536 5.6e-132 K+ potassium transporter integral membrane domain
K_trans_C PF22776 552 - 796 9.8e-23 K+ potassium transporter C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1219
Acc65I GGTACC 2 cut(s) 1639, 1791
AccB1I GGYRCC 2 cut(s) 1639, 1791
AccB7I CCANNNNNTGG 1 cut(s) 1994
AccI GTMKAC 3 cut(s) 80, 322, 822
AciI CCGC 2 cut(s) 2131, 2278
AclI AACGTT 1 cut(s) 852
AclWI GGATC 1 cut(s) 1814
AcoI YGGCCR 4 cut(s) 576, 856, 1140, 1329
AcsI RAATTY 5 cut(s) 584, 1474, 1568, 1680, 1916
AcuI CTGAAG 3 cut(s) 266, 916, 1095
AfiI CCNNNNNNNGG 4 cut(s) 1389, 1625, 1649, 1994
AflIII ACRYGT 2 cut(s) 701, 825
AjnI CCWGG 4 cut(s) 471, 1167, 1634, 1642
AjuI GAANNNNNNNTTGG 2 cut(s) 1884, 1916
AleI CACNNNNGTG 1 cut(s) 316
Alw21I GWGCWC 1 cut(s) 2058
Alw26I GTCTC 5 cut(s) 62, 1367, 1678, 1761, 1866
Alw44I GTGCAC 1 cut(s) 2054
AlwI GGATC 1 cut(s) 1814
AlwNI CAGNNNCTG 1 cut(s) 1168
AoxI GGCC 6 cut(s) 576, 856, 906, 1140, 1329, 1811
ApaLI GTGCAC 1 cut(s) 2054
ApeKI GCWGC 5 cut(s) 876, 1007, 2140, 2219, 2354
ApoI RAATTY 5 cut(s) 584, 1474, 1568, 1680, 1916
ArsI GACNNNNNNTTYG 4 cut(s) 1574, 1606, 2284, 2316
Asp718I GGTACC 2 cut(s) 1639, 1791
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 469, 1811
AsuHPI GGTGA 2 cut(s) 1387, 1855
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 2058
BaeI ACNNNNGTAYC 2 cut(s) 1623, 1656
BalI TGGCCA 1 cut(s) 578
BanI GGYRCC 2 cut(s) 1639, 1791
Bbv12I GWGCWC 1 cut(s) 2058
BbvI GCAGC 5 cut(s) 888, 994, 2127, 2206, 2341
BccI CCATC 4 cut(s) 953, 1160, 1255, 1996
BceAI ACGGC 4 cut(s) 843, 1155, 1316, 2275
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 4 cut(s) 473, 1169, 1636, 1644
BciVI GTATCC 2 cut(s) 181, 1248
BclI TGATCA 3 cut(s) 1861, 1968, 2286
BcoDI GTCTC 5 cut(s) 62, 1367, 1678, 1761, 1866
BfaI CTAG 5 cut(s) 617, 923, 1625, 2072, 2205
BfmI CTRYAG 3 cut(s) 1593, 2317, 2380
BfuAI ACCTGC 1 cut(s) 1219
BfuI GTATCC 2 cut(s) 181, 1248
BglI GCCNNNNNGGC 1 cut(s) 1004
BglII AGATCT 2 cut(s) 919, 1819
BisI GCNGC 5 cut(s) 877, 1008, 2141, 2220, 2355
BlsI GCNGC 5 cut(s) 878, 1009, 2142, 2221, 2356
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 4 cut(s) 473, 1169, 1636, 1644
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 2 cut(s) 469, 1811
BmiI GGNNCC 4 cut(s) 487, 1552, 1641, 1793
BmrFI CCNGG 4 cut(s) 473, 1169, 1636, 1644
BmrI ACTGGG 2 cut(s) 796, 1399
BmsI GCATC 6 cut(s) 240, 665, 2077, 2103, 2151, 2191
BmuI ACTGGG 2 cut(s) 796, 1399
BplI GAGNNNNNCTC 2 cut(s) 2012, 2044
BpmI CTGGAG 2 cut(s) 671, 801
BsaAI YACGTR 1 cut(s) 704
BsaBI GATNNNNATC 1 cut(s) 1044
BsaJI CCNNGG 3 cut(s) 106, 1635, 1926
Bsc4I CCNNNNNNNGG 4 cut(s) 1389, 1625, 1649, 1994
Bse118I RCCGGY 2 cut(s) 998, 2067
Bse1I ACTGG 9 cut(s) 644, 791, 818, 1088, 1143, 1256, 1377, 1394, 1763
Bse3DI GCAATG 2 cut(s) 1321, 1350
Bse8I GATNNNNATC 1 cut(s) 1044
BseBI CCWGG 4 cut(s) 473, 1169, 1636, 1644
BseDI CCNNGG 3 cut(s) 106, 1635, 1926
BseJI GATNNNNATC 1 cut(s) 1044
BseLI CCNNNNNNNGG 4 cut(s) 1389, 1625, 1649, 1994
BseMI GCAATG 2 cut(s) 1321, 1350
BseMII CTCAG 5 cut(s) 44, 49, 1066, 1689, 2055
BseNI ACTGG 9 cut(s) 644, 791, 818, 1088, 1143, 1256, 1377, 1394, 1763
BseRI GAGGAG 1 cut(s) 2195
BseSI GKGCMC 1 cut(s) 2058
BseXI GCAGC 5 cut(s) 888, 994, 2127, 2206, 2341
BseYI CCCAGC 2 cut(s) 520, 1618
BshFI GGCC 6 cut(s) 578, 858, 908, 1142, 1331, 1813
BshNI GGYRCC 2 cut(s) 1639, 1791
BsiHKAI GWGCWC 1 cut(s) 2058
BsiSI CCGG 2 cut(s) 999, 2068
BslFI GGGAC 4 cut(s) 169, 712, 803, 1760
BslI CCNNNNNNNGG 4 cut(s) 1389, 1625, 1649, 1994
BsmAI GTCTC 5 cut(s) 62, 1367, 1678, 1761, 1866
BsmFI GGGAC 4 cut(s) 169, 712, 803, 1760
BsnI GGCC 6 cut(s) 578, 858, 908, 1142, 1331, 1813
Bsp1286I GDGCHC 1 cut(s) 2058
Bsp1407I TGTACA 1 cut(s) 828
Bsp143I GATC 8 cut(s) 560, 919, 1737, 1806, 1819, 1861, 1968, 2286
BspACI CCGC 2 cut(s) 2131, 2278
BspANI GGCC 6 cut(s) 578, 858, 908, 1142, 1331, 1813
BspCNI CTCAG 5 cut(s) 43, 48, 1065, 1688, 2054
BspHI TCATGA 2 cut(s) 1030, 2289
BspLI GGNNCC 4 cut(s) 487, 1552, 1641, 1793
BspMAI CTGCAG 2 cut(s) 1597, 2321
BspMI ACCTGC 1 cut(s) 1219
BspPI GGATC 1 cut(s) 1814
BspT107I GGYRCC 2 cut(s) 1639, 1791
BsrDI GCAATG 2 cut(s) 1321, 1350
BsrFI RCCGGY 2 cut(s) 998, 2067
BsrGI TGTACA 1 cut(s) 828
BsrI ACTGG 9 cut(s) 644, 791, 818, 1088, 1143, 1256, 1377, 1394, 1763
BssAI RCCGGY 2 cut(s) 998, 2067
BssECI CCNNGG 3 cut(s) 106, 1635, 1926
BssMI GATC 8 cut(s) 560, 919, 1737, 1806, 1819, 1861, 1968, 2286
BssNAI GTATAC 2 cut(s) 81, 823
BssT1I CCWWGG 1 cut(s) 106
Bst1107I GTATAC 2 cut(s) 81, 823
Bst2UI CCWGG 4 cut(s) 473, 1169, 1636, 1644
Bst4CI ACNGT 4 cut(s) 193, 567, 1279, 2060
Bst6I CTCTTC 3 cut(s) 683, 1391, 1887
BstAUI TGTACA 1 cut(s) 828
BstBAI YACGTR 1 cut(s) 704
BstC8I GCNNGC 2 cut(s) 1982, 2069
BstDEI CTNAG 6 cut(s) 30, 35, 1052, 1675, 2041, 2157
BstDSI CCRYGG 1 cut(s) 1926
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 8 cut(s) 563, 922, 1740, 1809, 1822, 1864, 1971, 2289
BstMAI GTCTC 5 cut(s) 62, 1367, 1678, 1761, 1866
BstMBI GATC 8 cut(s) 560, 919, 1737, 1806, 1819, 1861, 1968, 2286
BstMWI GCNNNNNNNGC 4 cut(s) 428, 914, 1004, 1540
BstNI CCWGG 4 cut(s) 473, 1169, 1636, 1644
BstNSI RCATGY 3 cut(s) 329, 829, 2094
BstSCI CCNGG 4 cut(s) 471, 1167, 1634, 1642
BstSFI CTRYAG 3 cut(s) 1593, 2317, 2380
BstSLI GKGCMC 1 cut(s) 2058
BstV1I GCAGC 5 cut(s) 888, 994, 2127, 2206, 2341
BstX2I RGATCY 2 cut(s) 919, 1819
BstYI RGATCY 2 cut(s) 919, 1819
BstZ17I GTATAC 2 cut(s) 81, 823
BsuI GTATCC 2 cut(s) 181, 1248
BsuRI GGCC 6 cut(s) 578, 858, 908, 1142, 1331, 1813
BtgI CCRYGG 1 cut(s) 1926
BtgZI GCGATG 1 cut(s) 1463
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 9 cut(s) 563, 1060, 1081, 1089, 1169, 1370, 1875, 2049, 2065
BveI ACCTGC 1 cut(s) 1219
Cac8I GCNNGC 2 cut(s) 1982, 2069
CaiI CAGNNNCTG 1 cut(s) 1168
CciI TCATGA 2 cut(s) 1030, 2289
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 2 cut(s) 998, 2067
Cfr13I GGNCC 2 cut(s) 469, 1811
DdeI CTNAG 6 cut(s) 30, 35, 1052, 1675, 2041, 2157
DpnI GATC 8 cut(s) 562, 921, 1739, 1808, 1821, 1863, 1970, 2288
DpnII GATC 8 cut(s) 560, 919, 1737, 1806, 1819, 1861, 1968, 2286
DraI TTTAAA 1 cut(s) 631
EaeI YGGCCR 4 cut(s) 576, 856, 1140, 1329
Eam1104I CTCTTC 3 cut(s) 683, 1391, 1887
EarI CTCTTC 3 cut(s) 683, 1391, 1887
Eco130I CCWWGG 1 cut(s) 106
Eco32I GATATC 2 cut(s) 175, 1246
Eco47I GGWCC 1 cut(s) 469
Eco57I CTGAAG 3 cut(s) 266, 916, 1095
EcoRI GAATTC 3 cut(s) 1568, 1680, 1916
EcoRII CCWGG 4 cut(s) 471, 1167, 1634, 1642
EcoRV GATATC 2 cut(s) 175, 1246
EcoT14I CCWWGG 1 cut(s) 106
EcoT22I ATGCAT 3 cut(s) 6, 378, 2092
ErhI CCWWGG 1 cut(s) 106
FaqI GGGAC 4 cut(s) 169, 712, 803, 1760
FbaI TGATCA 3 cut(s) 1861, 1968, 2286
FblI GTMKAC 3 cut(s) 80, 322, 822
Fnu4HI GCNGC 5 cut(s) 877, 1008, 2141, 2220, 2355
Fsp4HI GCNGC 5 cut(s) 877, 1008, 2141, 2220, 2355
FspBI CTAG 5 cut(s) 617, 923, 1625, 2072, 2205
GlaI GCGC 1 cut(s) 138
GluI GCNGC 5 cut(s) 877, 1008, 2141, 2220, 2355
GsaI CCCAGC 2 cut(s) 524, 1622
GsuI CTGGAG 2 cut(s) 671, 801
HaeIII GGCC 6 cut(s) 578, 858, 908, 1142, 1331, 1813
HapII CCGG 2 cut(s) 999, 2068
HhaI GCGC 1 cut(s) 139
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HindIII AAGCTT 2 cut(s) 624, 1562
HinfI GANTC 7 cut(s) 26, 413, 611, 1409, 1711, 2008, 2039
HpaII CCGG 2 cut(s) 999, 2068
HphI GGTGA 2 cut(s) 1387, 1855
Hpy166II GTNNAC 5 cut(s) 81, 323, 823, 1089, 2056
Hpy8I GTNNAC 5 cut(s) 81, 323, 823, 1089, 2056
HpyAV CCTTC 5 cut(s) 58, 220, 281, 1759, 1797
HpyCH4III ACNGT 4 cut(s) 193, 567, 1279, 2060
HpyCH4IV ACGT 3 cut(s) 703, 852, 2298
HpyF10VI GCNNNNNNNGC 4 cut(s) 428, 914, 1004, 1540
HpyF3I CTNAG 6 cut(s) 30, 35, 1052, 1675, 2041, 2157
HpySE526I ACGT 3 cut(s) 703, 852, 2298
HspAI GCGC 1 cut(s) 137
KpnI GGTACC 2 cut(s) 1643, 1795
KroI GCCGGC 1 cut(s) 2067
KroNI GCCGGC 1 cut(s) 2069
Ksp22I TGATCA 3 cut(s) 1861, 1968, 2286
Kzo9I GATC 8 cut(s) 560, 919, 1737, 1806, 1819, 1861, 1968, 2286
LmnI GCTCC 4 cut(s) 690, 730, 1487, 2182
Lsp1109I GCAGC 5 cut(s) 888, 994, 2127, 2206, 2341
LweI GCATC 6 cut(s) 240, 665, 2077, 2103, 2151, 2191
MaeI CTAG 5 cut(s) 617, 923, 1625, 2072, 2205
MaeII ACGT 3 cut(s) 703, 852, 2298
MaeIII GTNAC 8 cut(s) 452, 926, 1279, 1351, 1368, 1630, 2255, 2280
MalI GATC 8 cut(s) 562, 921, 1739, 1808, 1821, 1863, 1970, 2288
MboI GATC 8 cut(s) 560, 919, 1737, 1806, 1819, 1861, 1968, 2286
MboII GAAGA 9 cut(s) 585, 670, 1408, 1423, 1570, 1684, 1706, 1904, 1943
MfeI CAATTG 1 cut(s) 1284
MflI RGATCY 2 cut(s) 919, 1819
MhlI GDGCHC 1 cut(s) 2058
MlsI TGGCCA 1 cut(s) 578
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 1 cut(s) 2033
MmeI TCCRAC 2 cut(s) 842, 1099
Mox20I TGGCCA 1 cut(s) 578
Mph1103I ATGCAT 3 cut(s) 6, 378, 2092
MroNI GCCGGC 1 cut(s) 2067
MscI TGGCCA 1 cut(s) 578
MseI TTAA 6 cut(s) 405, 630, 849, 1577, 1824, 2015
MslI CAYNNNNRTG 6 cut(s) 316, 509, 961, 1035, 1053, 1925
Msp20I TGGCCA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 1115
MspI CCGG 2 cut(s) 999, 2068
MspR9I CCNGG 4 cut(s) 473, 1169, 1636, 1644
MunI CAATTG 1 cut(s) 1284
MvaI CCWGG 4 cut(s) 473, 1169, 1636, 1644
MwoI GCNNNNNNNGC 4 cut(s) 428, 914, 1004, 1540
NaeI GCCGGC 1 cut(s) 2069
NdeII GATC 8 cut(s) 560, 919, 1737, 1806, 1819, 1861, 1968, 2286
NgoMIV GCCGGC 1 cut(s) 2067
NlaIV GGNNCC 4 cut(s) 487, 1552, 1641, 1793
NmuCI GTSAC 4 cut(s) 452, 926, 1368, 2255
NsiI ATGCAT 3 cut(s) 6, 378, 2092
NspI RCATGY 3 cut(s) 329, 829, 2094
OliI CACNNNNGTG 1 cut(s) 316
PagI TCATGA 2 cut(s) 1030, 2289
PciI ACATGT 1 cut(s) 825
PdiI GCCGGC 1 cut(s) 2069
PfeI GAWTC 6 cut(s) 26, 413, 611, 1409, 1711, 2008
PflMI CCANNNNNTGG 1 cut(s) 1994
PkrI GCNGC 5 cut(s) 878, 1009, 2142, 2221, 2356
PleI GAGTC 1 cut(s) 2033
PpsI GAGTC 1 cut(s) 2033
Ppu21I YACGTR 1 cut(s) 704
PscI ACATGT 1 cut(s) 825
Psp1406I AACGTT 1 cut(s) 852
Psp6I CCWGG 4 cut(s) 471, 1167, 1634, 1642
PspFI CCCAGC 2 cut(s) 520, 1618
PspGI CCWGG 4 cut(s) 471, 1167, 1634, 1642
PspN4I GGNNCC 4 cut(s) 487, 1552, 1641, 1793
PspPI GGNCC 2 cut(s) 469, 1811
PstI CTGCAG 2 cut(s) 1597, 2321
PstNI CAGNNNCTG 1 cut(s) 1168
PsuI RGATCY 2 cut(s) 919, 1819
PvuII CAGCTG 1 cut(s) 1115
RseI CAYNNNNRTG 6 cut(s) 316, 509, 961, 1035, 1053, 1925
SaqAI TTAA 6 cut(s) 405, 630, 849, 1577, 1824, 2015
SatI GCNGC 5 cut(s) 877, 1008, 2141, 2220, 2355
Sau3AI GATC 8 cut(s) 560, 919, 1737, 1806, 1819, 1861, 1968, 2286
Sau96I GGNCC 2 cut(s) 469, 1811
ScaI AGTACT 1 cut(s) 133
SchI GAGTC 1 cut(s) 2033
ScrFI CCNGG 4 cut(s) 473, 1169, 1636, 1644
SduI GDGCHC 1 cut(s) 2058
SfaNI GCATC 6 cut(s) 240, 665, 2077, 2103, 2151, 2191
SfcI CTRYAG 3 cut(s) 1593, 2317, 2380
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 6 cut(s) 316, 509, 961, 1035, 1053, 1925
SsiI CCGC 2 cut(s) 2131, 2278
SspI AATATT 2 cut(s) 778, 1300
SspMI CTAG 5 cut(s) 617, 923, 1625, 2072, 2205
StyD4I CCNGG 4 cut(s) 471, 1167, 1634, 1642
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 4 cut(s) 193, 567, 1279, 2060
TaiI ACGT 3 cut(s) 706, 855, 2301
TaqI TCGA 5 cut(s) 416, 1078, 1572, 1907, 2111
TaqII GACCGA 1 cut(s) 520
TatI WGTACW 3 cut(s) 131, 306, 828
TfiI GAWTC 6 cut(s) 26, 413, 611, 1409, 1711, 2008
Tru1I TTAA 6 cut(s) 405, 630, 849, 1577, 1824, 2015
Tru9I TTAA 6 cut(s) 405, 630, 849, 1577, 1824, 2015
TscAI CASTG 9 cut(s) 570, 1060, 1088, 1096, 1169, 1377, 1882, 2049, 2065
TseFI GTSAC 4 cut(s) 452, 926, 1368, 2255
TseI GCWGC 5 cut(s) 876, 1007, 2140, 2219, 2354
Tsp45I GTSAC 4 cut(s) 452, 926, 1368, 2255
TspGWI ACGGA 2 cut(s) 1563, 1915
TspRI CASTG 9 cut(s) 570, 1060, 1088, 1096, 1169, 1377, 1882, 2049, 2065
Van91I CCANNNNNTGG 1 cut(s) 1994
VneI GTGCAC 1 cut(s) 2054
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 5 cut(s) 584, 1474, 1568, 1680, 1916
XceI RCATGY 3 cut(s) 329, 829, 2094
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XmiI GTMKAC 3 cut(s) 80, 322, 822
XspI CTAG 5 cut(s) 617, 923, 1625, 2072, 2205
ZrmI AGTACT 1 cut(s) 133
Zsp2I ATGCAT 3 cut(s) 6, 378, 2092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.