NF-X1-type zinc finger protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g17661 FvH4_5g17661 |
| malus_domestica | MD06G1232200.v1.1 MD14G1239000.v1.1 MD14G1239100.v1.1 |
| prunus_persica | Prupe.5G236500_v2.0.a1 Prupe.5G236500_v2.0.a1 Prupe.5G236500_v2.0.a1 Prupe.5G236500_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0178001 |
| rosa_laevigata | RLG00000005483 |
| rosa_multiflora | Rmu_sc0013399.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00275300 |
| rosa_rugosa | Rorug06G0412100 Rorug06G0412200.1 |
| rosa_samantha | Rh7AG011600 Rh7BG011100 Rh7CG011700 Rh7DG011700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1240 |
| Acc65I | GGTACC | 2 cut(s) | 1660, 1812 |
| AccB1I | GGYRCC | 2 cut(s) | 1660, 1812 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2021 |
| AccI | GTMKAC | 1 cut(s) | 843 |
| AccII | CGCG | 1 cut(s) | 1101 |
| AciI | CCGC | 2 cut(s) | 356, 2305 |
| AclI | AACGTT | 1 cut(s) | 873 |
| AclWI | GGATC | 1 cut(s) | 1835 |
| AcoI | YGGCCR | 1 cut(s) | 1350 |
| AcsI | RAATTY | 5 cut(s) | 411, 1589, 1701, 1937, 1975 |
| AcuI | CTGAAG | 2 cut(s) | 287, 1116 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 886, 1410, 1646, 1670, 2021 |
| AflIII | ACRYGT | 1 cut(s) | 846 |
| AgsI | TTSAA | 7 cut(s) | 85, 458, 578, 652, 1495, 1774, 2302 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 821 |
| AjnI | CCWGG | 4 cut(s) | 492, 1188, 1655, 1663 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1905, 1937 |
| AleI | CACNNNNGTG | 1 cut(s) | 337 |
| Alw21I | GWGCWC | 2 cut(s) | 2085, 2214 |
| Alw26I | GTCTC | 3 cut(s) | 1388, 1699, 1782 |
| Alw44I | GTGCAC | 1 cut(s) | 2081 |
| AlwI | GGATC | 1 cut(s) | 1835 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1189 |
| AoxI | GGCC | 3 cut(s) | 597, 1350, 1832 |
| ApaLI | GTGCAC | 1 cut(s) | 2081 |
| ApeKI | GCWGC | 5 cut(s) | 706, 709, 897, 1028, 2381 |
| ApoI | RAATTY | 5 cut(s) | 411, 1589, 1701, 1937, 1975 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1595, 1627, 2311, 2343 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1083 |
| Asp718I | GGTACC | 2 cut(s) | 1660, 1812 |
| AspS9I | GGNCC | 5 cut(s) | 490, 598, 811, 1832, 2155 |
| AsuC2I | CCSGG | 1 cut(s) | 2095 |
| AsuHPI | GGTGA | 2 cut(s) | 1876, 2044 |
| AvaII | GGWCC | 3 cut(s) | 490, 811, 2155 |
| BaeGI | GKGCMC | 1 cut(s) | 2085 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1644, 1677, 2094, 2127 |
| BalI | TGGCCA | 1 cut(s) | 1352 |
| BanI | GGYRCC | 2 cut(s) | 1660, 1812 |
| BanII | GRGCYC | 1 cut(s) | 2214 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1135, 1167 |
| Bbv12I | GWGCWC | 2 cut(s) | 2085, 2214 |
| BbvI | GCAGC | 5 cut(s) | 693, 721, 909, 1015, 2368 |
| BccI | CCATC | 6 cut(s) | 260, 424, 974, 1181, 1276, 2023 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 502, 536 |
| BciT130I | CCWGG | 4 cut(s) | 494, 1190, 1657, 1665 |
| BciVI | GTATCC | 2 cut(s) | 82, 202 |
| BclI | TGATCA | 1 cut(s) | 2313 |
| BcnI | CCSGG | 1 cut(s) | 2095 |
| BcoDI | GTCTC | 3 cut(s) | 1388, 1699, 1782 |
| BfaI | CTAG | 2 cut(s) | 944, 1646 |
| BfmI | CTRYAG | 4 cut(s) | 707, 1137, 1614, 2407 |
| BfuAI | ACCTGC | 1 cut(s) | 1240 |
| BfuI | GTATCC | 2 cut(s) | 82, 202 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1025 |
| BglII | AGATCT | 2 cut(s) | 940, 1840 |
| BisI | GCNGC | 5 cut(s) | 707, 710, 898, 1029, 2382 |
| BlsI | GCNGC | 5 cut(s) | 708, 711, 899, 1030, 2383 |
| Bme1390I | CCNGG | 5 cut(s) | 494, 1190, 1657, 1665, 2095 |
| Bme18I | GGWCC | 3 cut(s) | 490, 811, 2155 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 821 |
| BmgT120I | GGNCC | 5 cut(s) | 490, 598, 811, 1832, 2155 |
| BmiI | GGNNCC | 6 cut(s) | 508, 812, 1573, 1662, 1814, 1927 |
| BmrFI | CCNGG | 5 cut(s) | 494, 1190, 1657, 1665, 2095 |
| BmrI | ACTGGG | 2 cut(s) | 817, 1420 |
| BmsI | GCATC | 4 cut(s) | 686, 2104, 2178, 2218 |
| BmuI | ACTGGG | 2 cut(s) | 817, 1420 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 142, 174, 2039, 2071 |
| BpuMI | CCSGG | 1 cut(s) | 2095 |
| BsaBI | GATNNNNATC | 3 cut(s) | 610, 773, 1065 |
| BsaJI | CCNNGG | 3 cut(s) | 672, 1656, 1947 |
| BsaWI | WCCGGW | 2 cut(s) | 2157, 2356 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 886, 1410, 1646, 1670, 2021 |
| Bse118I | RCCGGY | 1 cut(s) | 1019 |
| Bse1I | ACTGG | 9 cut(s) | 665, 812, 1094, 1109, 1164, 1277, 1398, 1415, 1784 |
| Bse3DI | GCAATG | 2 cut(s) | 936, 1342 |
| Bse8I | GATNNNNATC | 3 cut(s) | 610, 773, 1065 |
| BseBI | CCWGG | 4 cut(s) | 494, 1190, 1657, 1665 |
| BseDI | CCNNGG | 3 cut(s) | 672, 1656, 1947 |
| BseGI | GGATG | 1 cut(s) | 1063 |
| BseJI | GATNNNNATC | 3 cut(s) | 610, 773, 1065 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 886, 1410, 1646, 1670, 2021 |
| BseMI | GCAATG | 2 cut(s) | 936, 1342 |
| BseMII | CTCAG | 4 cut(s) | 65, 70, 1087, 1710 |
| BseNI | ACTGG | 9 cut(s) | 665, 812, 1094, 1109, 1164, 1277, 1398, 1415, 1784 |
| BseRI | GAGGAG | 1 cut(s) | 2222 |
| BseSI | GKGCMC | 1 cut(s) | 2085 |
| BseXI | GCAGC | 5 cut(s) | 693, 721, 909, 1015, 2368 |
| BseYI | CCCAGC | 2 cut(s) | 541, 1639 |
| BsgI | GTGCAG | 1 cut(s) | 2162 |
| Bsh1236I | CGCG | 1 cut(s) | 1101 |
| BshFI | GGCC | 3 cut(s) | 599, 1352, 1834 |
| BshNI | GGYRCC | 2 cut(s) | 1660, 1812 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2085, 2214 |
| BsiSI | CCGG | 5 cut(s) | 1020, 1706, 2095, 2158, 2357 |
| BslFI | GGGAC | 5 cut(s) | 190, 733, 824, 1781, 1907 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 886, 1410, 1646, 1670, 2021 |
| BsmAI | GTCTC | 3 cut(s) | 1388, 1699, 1782 |
| BsmFI | GGGAC | 5 cut(s) | 190, 733, 824, 1781, 1907 |
| BsnI | GGCC | 3 cut(s) | 599, 1352, 1834 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2085, 2214 |
| Bsp1407I | TGTACA | 2 cut(s) | 29, 849 |
| Bsp143I | GATC | 8 cut(s) | 581, 940, 990, 1758, 1827, 1840, 2049, 2313 |
| Bsp68I | TCGCGA | 1 cut(s) | 1101 |
| BspACI | CCGC | 2 cut(s) | 356, 2305 |
| BspANI | GGCC | 3 cut(s) | 599, 1352, 1834 |
| BspCNI | CTCAG | 4 cut(s) | 64, 69, 1086, 1709 |
| BspFNI | CGCG | 1 cut(s) | 1101 |
| BspHI | TCATGA | 4 cut(s) | 1051, 1315, 1551, 2316 |
| BspLI | GGNNCC | 6 cut(s) | 508, 812, 1573, 1662, 1814, 1927 |
| BspMAI | CTGCAG | 2 cut(s) | 711, 1618 |
| BspMI | ACCTGC | 1 cut(s) | 1240 |
| BspPI | GGATC | 1 cut(s) | 1835 |
| BspT107I | GGYRCC | 2 cut(s) | 1660, 1812 |
| BsrDI | GCAATG | 2 cut(s) | 936, 1342 |
| BsrFI | RCCGGY | 1 cut(s) | 1019 |
| BsrGI | TGTACA | 2 cut(s) | 29, 849 |
| BsrI | ACTGG | 9 cut(s) | 665, 812, 1094, 1109, 1164, 1277, 1398, 1415, 1784 |
| BssAI | RCCGGY | 1 cut(s) | 1019 |
| BssECI | CCNNGG | 3 cut(s) | 672, 1656, 1947 |
| BssMI | GATC | 8 cut(s) | 581, 940, 990, 1758, 1827, 1840, 2049, 2313 |
| BssNAI | GTATAC | 1 cut(s) | 844 |
| BssT1I | CCWWGG | 1 cut(s) | 672 |
| Bst1107I | GTATAC | 1 cut(s) | 844 |
| Bst2UI | CCWGG | 4 cut(s) | 494, 1190, 1657, 1665 |
| Bst4CI | ACNGT | 5 cut(s) | 214, 588, 881, 1300, 1449 |
| Bst6I | CTCTTC | 3 cut(s) | 704, 1412, 1908 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 935 |
| BstAUI | TGTACA | 2 cut(s) | 29, 849 |
| BstC8I | GCNNGC | 2 cut(s) | 348, 2009 |
| BstDEI | CTNAG | 5 cut(s) | 51, 56, 1073, 1696, 2184 |
| BstDSI | CCRYGG | 1 cut(s) | 1947 |
| BstF5I | GGATG | 1 cut(s) | 1063 |
| BstFNI | CGCG | 1 cut(s) | 1101 |
| BstKTI | GATC | 8 cut(s) | 584, 943, 993, 1761, 1830, 1843, 2052, 2316 |
| BstMAI | GTCTC | 3 cut(s) | 1388, 1699, 1782 |
| BstMBI | GATC | 8 cut(s) | 581, 940, 990, 1758, 1827, 1840, 2049, 2313 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 935, 1025 |
| BstNI | CCWGG | 4 cut(s) | 494, 1190, 1657, 1665 |
| BstNSI | RCATGY | 3 cut(s) | 350, 850, 2121 |
| BstSCI | CCNGG | 5 cut(s) | 492, 1188, 1655, 1663, 2093 |
| BstSFI | CTRYAG | 4 cut(s) | 707, 1137, 1614, 2407 |
| BstSLI | GKGCMC | 1 cut(s) | 2085 |
| BstUI | CGCG | 1 cut(s) | 1101 |
| BstV1I | GCAGC | 5 cut(s) | 693, 721, 909, 1015, 2368 |
| BstX2I | RGATCY | 2 cut(s) | 940, 1840 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1348 |
| BstYI | RGATCY | 2 cut(s) | 940, 1840 |
| BstZ17I | GTATAC | 1 cut(s) | 844 |
| BsuI | GTATCC | 2 cut(s) | 82, 202 |
| BsuRI | GGCC | 3 cut(s) | 599, 1352, 1834 |
| BtgI | CCRYGG | 1 cut(s) | 1947 |
| BtgZI | GCGATG | 1 cut(s) | 1484 |
| BtsCI | GGATG | 1 cut(s) | 1063 |
| BtsIMutI | CAGTG | 4 cut(s) | 584, 1081, 1190, 1391 |
| BtuMI | TCGCGA | 1 cut(s) | 1101 |
| BveI | ACCTGC | 1 cut(s) | 1240 |
| Cac8I | GCNNGC | 2 cut(s) | 348, 2009 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1189 |
| CciI | TCATGA | 4 cut(s) | 1051, 1315, 1551, 2316 |
| Cfr10I | RCCGGY | 1 cut(s) | 1019 |
| Cfr13I | GGNCC | 5 cut(s) | 490, 598, 811, 1832, 2155 |
| DdeI | CTNAG | 5 cut(s) | 51, 56, 1073, 1696, 2184 |
| DpnI | GATC | 8 cut(s) | 583, 942, 992, 1760, 1829, 1842, 2051, 2315 |
| DpnII | GATC | 8 cut(s) | 581, 940, 990, 1758, 1827, 1840, 2049, 2313 |
| DraI | TTTAAA | 1 cut(s) | 2043 |
| DriI | GACNNNNNGTC | 1 cut(s) | 821 |
| EaeI | YGGCCR | 1 cut(s) | 1350 |
| Eam1104I | CTCTTC | 3 cut(s) | 704, 1412, 1908 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 821 |
| EarI | CTCTTC | 3 cut(s) | 704, 1412, 1908 |
| Ecl136II | GAGCTC | 1 cut(s) | 2212 |
| Eco130I | CCWWGG | 1 cut(s) | 672 |
| Eco24I | GRGCYC | 1 cut(s) | 2214 |
| Eco32I | GATATC | 2 cut(s) | 196, 1267 |
| Eco47I | GGWCC | 3 cut(s) | 490, 811, 2155 |
| Eco53kI | GAGCTC | 1 cut(s) | 2212 |
| Eco57I | CTGAAG | 2 cut(s) | 287, 1116 |
| EcoICRI | GAGCTC | 1 cut(s) | 2212 |
| EcoRI | GAATTC | 4 cut(s) | 1589, 1701, 1937, 1975 |
| EcoRII | CCWGG | 4 cut(s) | 492, 1188, 1655, 1663 |
| EcoRV | GATATC | 2 cut(s) | 196, 1267 |
| EcoT14I | CCWWGG | 1 cut(s) | 672 |
| EcoT22I | ATGCAT | 3 cut(s) | 27, 399, 2119 |
| EcoT38I | GRGCYC | 1 cut(s) | 2214 |
| ErhI | CCWWGG | 1 cut(s) | 672 |
| FaqI | GGGAC | 5 cut(s) | 190, 733, 824, 1781, 1907 |
| FauI | CCCGC | 1 cut(s) | 349 |
| FauNDI | CATATG | 2 cut(s) | 1792, 2059 |
| FbaI | TGATCA | 1 cut(s) | 2313 |
| FblI | GTMKAC | 1 cut(s) | 843 |
| Fnu4HI | GCNGC | 5 cut(s) | 707, 710, 898, 1029, 2382 |
| FokI | GGATG | 1 cut(s) | 1070 |
| FriOI | GRGCYC | 1 cut(s) | 2214 |
| Fsp4HI | GCNGC | 5 cut(s) | 707, 710, 898, 1029, 2382 |
| FspBI | CTAG | 2 cut(s) | 944, 1646 |
| GluI | GCNGC | 5 cut(s) | 707, 710, 898, 1029, 2382 |
| GsaI | CCCAGC | 2 cut(s) | 545, 1643 |
| HaeIII | GGCC | 3 cut(s) | 599, 1352, 1834 |
| HapII | CCGG | 5 cut(s) | 1020, 1706, 2095, 2158, 2357 |
| HincII | GTYRAC | 1 cut(s) | 877 |
| HindII | GTYRAC | 1 cut(s) | 877 |
| HindIII | AAGCTT | 1 cut(s) | 645 |
| HinfI | GANTC | 9 cut(s) | 47, 434, 632, 721, 1079, 1732, 1967, 2035, 2066 |
| HpaII | CCGG | 5 cut(s) | 1020, 1706, 2095, 2158, 2357 |
| HphI | GGTGA | 2 cut(s) | 1876, 2044 |
| Hpy166II | GTNNAC | 3 cut(s) | 844, 877, 2083 |
| Hpy188I | TCNGA | 8 cut(s) | 123, 205, 592, 619, 925, 956, 1234, 1809 |
| Hpy8I | GTNNAC | 3 cut(s) | 844, 877, 2083 |
| HpyAV | CCTTC | 5 cut(s) | 241, 302, 1780, 1818, 2279 |
| HpyCH4III | ACNGT | 5 cut(s) | 214, 588, 881, 1300, 1449 |
| HpyCH4IV | ACGT | 1 cut(s) | 873 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 935, 1025 |
| HpyF3I | CTNAG | 5 cut(s) | 51, 56, 1073, 1696, 2184 |
| HpySE526I | ACGT | 1 cut(s) | 873 |
| KpnI | GGTACC | 2 cut(s) | 1664, 1816 |
| Ksp22I | TGATCA | 1 cut(s) | 2313 |
| Kzo9I | GATC | 8 cut(s) | 581, 940, 990, 1758, 1827, 1840, 2049, 2313 |
| LmnI | GCTCC | 5 cut(s) | 163, 751, 1508, 2209, 2217 |
| Lsp1109I | GCAGC | 5 cut(s) | 693, 721, 909, 1015, 2368 |
| LweI | GCATC | 4 cut(s) | 686, 2104, 2178, 2218 |
| MaeI | CTAG | 2 cut(s) | 944, 1646 |
| MaeII | ACGT | 1 cut(s) | 873 |
| MaeIII | GTNAC | 5 cut(s) | 473, 1300, 1372, 1389, 2307 |
| MalI | GATC | 8 cut(s) | 583, 942, 992, 1760, 1829, 1842, 2051, 2315 |
| MboI | GATC | 8 cut(s) | 581, 940, 990, 1758, 1827, 1840, 2049, 2313 |
| MfeI | CAATTG | 1 cut(s) | 1305 |
| MflI | RGATCY | 2 cut(s) | 940, 1840 |
| MhlI | GDGCHC | 2 cut(s) | 2085, 2214 |
| MlsI | TGGCCA | 1 cut(s) | 1352 |
| MluNI | TGGCCA | 1 cut(s) | 1352 |
| MlyI | GAGTC | 3 cut(s) | 641, 715, 2060 |
| MmeI | TCCRAC | 1 cut(s) | 863 |
| Mox20I | TGGCCA | 1 cut(s) | 1352 |
| Mph1103I | ATGCAT | 3 cut(s) | 27, 399, 2119 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1083 |
| MscI | TGGCCA | 1 cut(s) | 1352 |
| MseI | TTAA | 4 cut(s) | 870, 1598, 1845, 2042 |
| MslI | CAYNNNNRTG | 4 cut(s) | 337, 1056, 1074, 1946 |
| Msp20I | TGGCCA | 1 cut(s) | 1352 |
| MspA1I | CMGCKG | 1 cut(s) | 1136 |
| MspI | CCGG | 5 cut(s) | 1020, 1706, 2095, 2158, 2357 |
| MspR9I | CCNGG | 5 cut(s) | 494, 1190, 1657, 1665, 2095 |
| MunI | CAATTG | 1 cut(s) | 1305 |
| MvaI | CCWGG | 4 cut(s) | 494, 1190, 1657, 1665 |
| MvnI | CGCG | 1 cut(s) | 1101 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 935, 1025 |
| NciI | CCSGG | 1 cut(s) | 2095 |
| NdeI | CATATG | 2 cut(s) | 1792, 2059 |
| NdeII | GATC | 8 cut(s) | 581, 940, 990, 1758, 1827, 1840, 2049, 2313 |
| NlaIV | GGNNCC | 6 cut(s) | 508, 812, 1573, 1662, 1814, 1927 |
| NmuCI | GTSAC | 3 cut(s) | 473, 1372, 1389 |
| NruI | TCGCGA | 1 cut(s) | 1101 |
| NsiI | ATGCAT | 3 cut(s) | 27, 399, 2119 |
| NspI | RCATGY | 3 cut(s) | 350, 850, 2121 |
| OliI | CACNNNNGTG | 1 cut(s) | 337 |
| PaeI | GCATGC | 1 cut(s) | 350 |
| PagI | TCATGA | 4 cut(s) | 1051, 1315, 1551, 2316 |
| PciI | ACATGT | 1 cut(s) | 846 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1083 |
| PfeI | GAWTC | 6 cut(s) | 47, 434, 1079, 1732, 1967, 2035 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2021 |
| PkrI | GCNGC | 5 cut(s) | 708, 711, 899, 1030, 2383 |
| PleI | GAGTC | 3 cut(s) | 640, 715, 2060 |
| PpsI | GAGTC | 3 cut(s) | 640, 715, 2060 |
| PscI | ACATGT | 1 cut(s) | 846 |
| Psp124BI | GAGCTC | 1 cut(s) | 2214 |
| Psp1406I | AACGTT | 1 cut(s) | 873 |
| Psp6I | CCWGG | 4 cut(s) | 492, 1188, 1655, 1663 |
| PspFI | CCCAGC | 2 cut(s) | 541, 1639 |
| PspGI | CCWGG | 4 cut(s) | 492, 1188, 1655, 1663 |
| PspN4I | GGNNCC | 6 cut(s) | 508, 812, 1573, 1662, 1814, 1927 |
| PspPI | GGNCC | 5 cut(s) | 490, 598, 811, 1832, 2155 |
| PstI | CTGCAG | 2 cut(s) | 711, 1618 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1189 |
| PsuI | RGATCY | 2 cut(s) | 940, 1840 |
| PvuII | CAGCTG | 1 cut(s) | 1136 |
| RruI | TCGCGA | 1 cut(s) | 1101 |
| RseI | CAYNNNNRTG | 4 cut(s) | 337, 1056, 1074, 1946 |
| SacI | GAGCTC | 1 cut(s) | 2214 |
| SaqAI | TTAA | 4 cut(s) | 870, 1598, 1845, 2042 |
| SatI | GCNGC | 5 cut(s) | 707, 710, 898, 1029, 2382 |
| Sau3AI | GATC | 8 cut(s) | 581, 940, 990, 1758, 1827, 1840, 2049, 2313 |
| Sau96I | GGNCC | 5 cut(s) | 490, 598, 811, 1832, 2155 |
| SchI | GAGTC | 3 cut(s) | 641, 715, 2060 |
| ScrFI | CCNGG | 5 cut(s) | 494, 1190, 1657, 1665, 2095 |
| SduI | GDGCHC | 2 cut(s) | 2085, 2214 |
| SfaNI | GCATC | 4 cut(s) | 686, 2104, 2178, 2218 |
| SfcI | CTRYAG | 4 cut(s) | 707, 1137, 1614, 2407 |
| SinI | GGWCC | 3 cut(s) | 490, 811, 2155 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 337, 1056, 1074, 1946 |
| SphI | GCATGC | 1 cut(s) | 350 |
| SsiI | CCGC | 2 cut(s) | 356, 2305 |
| SspI | AATATT | 1 cut(s) | 799 |
| SspMI | CTAG | 2 cut(s) | 944, 1646 |
| SstI | GAGCTC | 1 cut(s) | 2214 |
| StyD4I | CCNGG | 5 cut(s) | 492, 1188, 1655, 1663, 2093 |
| StyI | CCWWGG | 1 cut(s) | 672 |
| TaaI | ACNGT | 5 cut(s) | 214, 588, 881, 1300, 1449 |
| TaiI | ACGT | 1 cut(s) | 876 |
| TaqI | TCGA | 4 cut(s) | 437, 1587, 1593, 2112 |
| TaqII | GACCGA | 2 cut(s) | 541, 828 |
| TatI | WGTACW | 4 cut(s) | 29, 152, 327, 849 |
| TfiI | GAWTC | 6 cut(s) | 47, 434, 1079, 1732, 1967, 2035 |
| Tru1I | TTAA | 4 cut(s) | 870, 1598, 1845, 2042 |
| Tru9I | TTAA | 4 cut(s) | 870, 1598, 1845, 2042 |
| TscAI | CASTG | 4 cut(s) | 591, 1081, 1190, 1398 |
| TseFI | GTSAC | 3 cut(s) | 473, 1372, 1389 |
| TseI | GCWGC | 5 cut(s) | 706, 709, 897, 1028, 2381 |
| Tsp45I | GTSAC | 3 cut(s) | 473, 1372, 1389 |
| TspGWI | ACGGA | 2 cut(s) | 1936, 2059 |
| TspRI | CASTG | 4 cut(s) | 591, 1081, 1190, 1398 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2021 |
| VneI | GTGCAC | 1 cut(s) | 2081 |
| VpaK11BI | GGWCC | 3 cut(s) | 490, 811, 2155 |
| XapI | RAATTY | 5 cut(s) | 411, 1589, 1701, 1937, 1975 |
| XceI | RCATGY | 3 cut(s) | 350, 850, 2121 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1101 |
| XmiI | GTMKAC | 1 cut(s) | 843 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1083 |
| XspI | CTAG | 2 cut(s) | 944, 1646 |
| Zsp2I | ATGCAT | 3 cut(s) | 27, 399, 2119 |