MD14G1239100.v1.1

NF-X1-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0012624
Physical Location & Seq
Forward (+)
31817582 .. 31817953
372 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1239100.v1.1.491

Sequence Viewer

Length: 372 bp
ATGATACAAATTCATATGAGATGGAGTGTGAGTAATGCGAGCAACGAAGCTGGGTCTCCATTAGGTGATGCAATTGAGAGTGGTTTTACGCCGGCGACGAGAAGGAAAGTCCGGTTCATGTTGCCTCCAAATAGTCCGAAAATGCGCATATCTGTGAGGGAGGACCTGCAAGAACTGATTGATGCAAGGGAGAGTGGGACTGCGTACTTCTTAGGGCAGGTGCATTTAGCAGTGCGCAACGGATTGAACATTCTAAAGCGATTGCTGATCATGACTTATGTGTTTCTGGATAAAAATTGCAGAGAGCCTCCAGTTGCACTCAGCATTCCTCATGCTGCTCTTGTTGAGGTTGGCATGGTCTGCTGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 map05165
Pfam Domains
Protein Families
K_trans R3H zf-NF-X1

Protein Analysis

124

Amino Acids

13.69

Weight (kDa)

8.99

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K_trans_C PF22776 44 - 121 1.1e-08 K+ potassium transporter C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 208
Acc16I TGCGCA 2 cut(s) 146, 236
Acc36I ACCTGC 2 cut(s) 174, 208
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 1 cut(s) 206
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 335, 363
ApoI RAATTY 1 cut(s) 9
AspLEI GCGC 2 cut(s) 147, 237
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 322, 350
BccI CCATC 1 cut(s) 15
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 60
BfuAI ACCTGC 2 cut(s) 174, 208
BisI GCNGC 2 cut(s) 336, 364
BlsI GCNGC 2 cut(s) 337, 365
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmsI GCATC 2 cut(s) 58, 172
BpmI CTGGAG 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 322, 350
BseYI CCCAGC 1 cut(s) 50
BsiSI CCGG 2 cut(s) 92, 112
BslFI GGGAC 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 324
Bso31I GGTCTC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 270
BspMI ACCTGC 2 cut(s) 174, 208
BspTNI GGTCTC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 91
BssMI GATC 1 cut(s) 267
BstAPI GCANNNNNTGC 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 40, 93
BstDEI CTNAG 2 cut(s) 211, 320
BstHHI GCGC 2 cut(s) 147, 237
BstKTI GATC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 322, 350
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 2 cut(s) 174, 208
Cac8I GCNNGC 2 cut(s) 40, 93
CciI TCATGA 1 cut(s) 270
CfoI GCGC 2 cut(s) 147, 237
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 205
CviAII CATG 4 cut(s) 118, 271, 332, 355
CviJI RGCY 2 cut(s) 50, 307
CviKI_1 RGCY 2 cut(s) 50, 307
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 211, 320
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 163
FaeI CATG 4 cut(s) 121, 274, 335, 358
FaqI GGGAC 1 cut(s) 211
FatI CATG 4 cut(s) 117, 270, 331, 354
FauNDI CATATG 2 cut(s) 15, 368
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 336, 364
Fsp4HI GCNGC 2 cut(s) 336, 364
FspAI RTGCGCAY 1 cut(s) 146
FspI TGCGCA 2 cut(s) 146, 236
GlaI GCGC 2 cut(s) 146, 236
GluI GCNGC 2 cut(s) 336, 364
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 294
HapII CCGG 2 cut(s) 92, 112
HhaI GCGC 2 cut(s) 147, 237
Hin1II CATG 4 cut(s) 121, 274, 335, 358
Hin6I GCGC 2 cut(s) 145, 235
HinP1I GCGC 2 cut(s) 145, 235
HpaII CCGG 2 cut(s) 92, 112
HphI GGTGA 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 2 cut(s) 271, 287
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 96
HpyCH4V TGCA 7 cut(s) 71, 169, 185, 223, 300, 317, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 2 cut(s) 211, 320
Hsp92II CATG 4 cut(s) 121, 274, 335, 358
HspAI GCGC 2 cut(s) 145, 235
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 1 cut(s) 267
LpnPI CCDG 7 cut(s) 36, 105, 125, 179, 203, 272, 324
Lsp1109I GCAGC 2 cut(s) 322, 350
LweI GCATC 2 cut(s) 58, 172
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MfeI CAATTG 1 cut(s) 72
MluCI AATT 3 cut(s) 9, 72, 295
MnlI CCTC 6 cut(s) 135, 150, 154, 318, 339, 340
MreI CGCCGGCG 1 cut(s) 91
MroNI GCCGGC 1 cut(s) 91
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 2 cut(s) 92, 112
MunI CAATTG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 360
NaeI GCCGGC 1 cut(s) 93
NdeI CATATG 2 cut(s) 15, 368
NdeII GATC 1 cut(s) 267
NgoMIV GCCGGC 1 cut(s) 91
NlaIII CATG 4 cut(s) 121, 274, 335, 358
NsbI TGCGCA 2 cut(s) 146, 236
PagI TCATGA 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PctI GAATGC 1 cut(s) 324
PdiI GCCGGC 1 cut(s) 93
PkrI GCNGC 2 cut(s) 337, 365
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 152
SatI GCNGC 2 cut(s) 336, 364
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 163
SetI ASST 5 cut(s) 52, 67, 168, 222, 351
SfaNI GCATC 2 cut(s) 58, 172
SgrAI CRCCGGYG 1 cut(s) 91
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 3 cut(s) 9, 72, 295
TasI AATT 3 cut(s) 9, 72, 295
TscAI CASTG 1 cut(s) 237
TseI GCWGC 2 cut(s) 335, 363
TspDTI ATGAA 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.