Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017940

Physical Location & Seq

Genomic Coordinates Reverse (-)

10558529 .. 10558870

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGCGGCGGCGGCAGAGGCAGAGGCAGAGTTCCACCGACGGCGAGCGCGAGCGTGACGACCACCATCACCCTCGAGAATCCCGACGAGTCGTCGGCATCGACATCTGCGCCTTTGGTTCTGCGGCTGAATCGGAAGAAGAAGCAAGTCACATGGAAGGAGGGGACCGTGGACAACGAGTTTATGCAGAAGAAGAGCTCCAAAAAGTGCTGCATCTTCCACAAGGACAAGCCCTTTGACGAAGACGACTCCGATGATGAAGACGATCATGATCATGATCACGATCACCACCACCACCATGATGATCACCCTTCATCTTCCCAAAATCACACCACCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000164 GO:0003006 GO:0003674 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0008157 GO:0008287 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0010154 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0022414 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032991 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

114

Amino Acids

12.63

Weight (kDa)

5.95

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPI_Ypi1	PF07491	44 - 89	1.5e-19	Protein phosphatase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31305
fragaria_vesca	FvH4_5g18370
malus_domestica	MD06G1239400.v1.1
prunus_persica	Prupe.5G243300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0177221
rosa_multiflora	Rmu_sc0001235.1_g000007 Rmu_sc0005310.1_g000016 Rmu_sc0035487.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276040
rosa_rugosa	Rorug06G0403900
rosa_samantha	Rh7AG003900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	1 cut(s)	50
AciI	CCGC	5 cut(s)	6, 9, 12, 124, 336
AhdI	GACNNNNNGTC	1 cut(s)	91
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Alw21I	GWGCWC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	210
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	2 cut(s)	50, 112
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	61, 278, 299
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	2 cut(s)	249, 267
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	57
BclI	TGATCA	3 cut(s)	271, 277, 304
BisI	GCNGC	5 cut(s)	7, 10, 13, 125, 211
BlsI	GCNGC	5 cut(s)	8, 11, 14, 126, 212
Bme18I	GGWCC	1 cut(s)	165
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	166
BmsI	GCATC	2 cut(s)	107, 222
BpiI	GAAGAC	2 cut(s)	249, 267
BsaBI	GATNNNNATC	3 cut(s)	270, 276, 282
BsaJI	CCNNGG	1 cut(s)	168
Bse8I	GATNNNNATC	3 cut(s)	270, 276, 282
BseDI	CCNNGG	1 cut(s)	168
BseJI	GATNNNNATC	3 cut(s)	270, 276, 282
BseXI	GCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	5 cut(s)	265, 271, 277, 283, 304
BspACI	CCGC	5 cut(s)	6, 9, 12, 124, 336
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	268, 274
BspLI	GGNNCC	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	5 cut(s)	265, 271, 277, 283, 304
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	46, 52
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	2 cut(s)	50, 112
BstKTI	GATC	5 cut(s)	268, 274, 280, 286, 307
BstMBI	GATC	5 cut(s)	265, 271, 277, 283, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 18
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	2 cut(s)	249, 267
BtgI	CCRYGG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	46, 52
CciI	TCATGA	2 cut(s)	268, 274
CfoI	GCGC	2 cut(s)	50, 112
Cfr13I	GGNCC	1 cut(s)	165
CviAII	CATG	4 cut(s)	153, 269, 275, 299
CviJI	RGCY	3 cut(s)	127, 198, 232
CviKI_1	RGCY	3 cut(s)	127, 198, 232
DpnI	GATC	5 cut(s)	267, 273, 279, 285, 306
DpnII	GATC	5 cut(s)	265, 271, 277, 283, 304
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	188
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	200
FaeI	CATG	4 cut(s)	156, 272, 278, 302
FaiI	YATR	5 cut(s)	154, 185, 270, 276, 300
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	4 cut(s)	152, 268, 274, 298
FbaI	TGATCA	3 cut(s)	271, 277, 304
Fnu4HI	GCNGC	5 cut(s)	7, 10, 13, 125, 211
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	5 cut(s)	7, 10, 13, 125, 211
GlaI	GCGC	2 cut(s)	49, 111
GluI	GCNGC	5 cut(s)	7, 10, 13, 125, 211
HhaI	GCGC	2 cut(s)	50, 112
Hin1II	CATG	4 cut(s)	156, 272, 278, 302
Hin6I	GCGC	2 cut(s)	48, 110
HinP1I	GCGC	2 cut(s)	48, 110
HinfI	GANTC	4 cut(s)	79, 89, 130, 248
HphI	GGTGA	3 cut(s)	61, 278, 299
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	135, 253
Hpy188III	TCNNGA	5 cut(s)	76, 83, 269, 275, 281
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	3 cut(s)	43, 89, 97
HpyAV	CCTTC	2 cut(s)	151, 321
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	187, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 18
Hsp92II	CATG	4 cut(s)	156, 272, 278, 302
HspAI	GCGC	2 cut(s)	48, 110
Ksp22I	TGATCA	3 cut(s)	271, 277, 304
Kzo9I	GATC	5 cut(s)	265, 271, 277, 283, 304
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	1 cut(s)	203
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	2 cut(s)	107, 222
MaeIII	GTNAC	2 cut(s)	55, 148
MalI	GATC	5 cut(s)	267, 273, 279, 285, 306
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	5 cut(s)	265, 271, 277, 283, 304
MboII	GAAGA	8 cut(s)	148, 151, 202, 205, 208, 254, 272, 309
MhlI	GDGCHC	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	98, 242
MnlI	CCTC	4 cut(s)	11, 17, 83, 154
MslI	CAYNNNNRTG	3 cut(s)	273, 297, 300
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	12, 18
NdeII	GATC	5 cut(s)	265, 271, 277, 283, 304
NlaIII	CATG	4 cut(s)	156, 272, 278, 302
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	55, 148
PaeR7I	CTCGAG	1 cut(s)	74
PagI	TCATGA	2 cut(s)	268, 274
PciSI	GCTCTTC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	3 cut(s)	47, 81, 98
PfeI	GAWTC	2 cut(s)	79, 130
PkrI	GCNGC	5 cut(s)	8, 11, 14, 126, 212
PleI	GAGTC	2 cut(s)	97, 242
PpsI	GAGTC	2 cut(s)	97, 242
Psp124BI	GAGCTC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	165
RseI	CAYNNNNRTG	3 cut(s)	273, 297, 300
SacI	GAGCTC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	188
SatI	GCNGC	5 cut(s)	7, 10, 13, 125, 211
Sau3AI	GATC	5 cut(s)	265, 271, 277, 283, 304
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	2 cut(s)	98, 242
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	1 cut(s)	200
SfaNI	GCATC	2 cut(s)	107, 222
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	3 cut(s)	273, 297, 300
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SsiI	CCGC	5 cut(s)	6, 9, 12, 124, 336
SstI	GAGCTC	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	75, 101
TauI	GCSGC	4 cut(s)	9, 12, 15, 127
TfiI	GAWTC	2 cut(s)	79, 130
TseFI	GTSAC	2 cut(s)	55, 148
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	2 cut(s)	55, 148
TspDTI	ATGAA	2 cut(s)	273, 303
VpaK11BI	GGWCC	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.