Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035487.1

Orthogroup ID

OG0017940

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1745

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035487.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 457 bp

gctgcaggcgagatcgagggtgggcgctggtgggcaggctgcaggcttgctgcgttgggtgggctgcgcaggcgcgggacttggggctgctgatgcgggggcagtagtatggagggcgactggcaagcatgagtggtggcggcggcggcagagccccactacgacgagcgtgacgaccacgatcacccttgagaatctggacgcgtcatctttgtcgggatccacatcttcgctgttggttttgcggctgaatcggaagaagaagcaagtcacctggaaggagggaaccgtcgacaacgagtttatgcagaagaagagctccaaaaagtgctgcatcttccacaaggataagccctttgacgaagacgataccgatgatgacgacgatcaccacgaccacgaccacgaccacgatcccccctcatcttctcaaaatcaaaatcacagcagcgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000164 GO:0003006 GO:0003674 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0008157 GO:0008287 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0010154 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0022414 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032991 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

151

Amino Acids

16.59

Weight (kDa)

6.77

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31305
fragaria_vesca	FvH4_5g18370
malus_domestica	MD06G1239400.v1.1
prunus_persica	Prupe.5G243300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0177221
rosa_multiflora	Rmu_sc0001235.1_g000007 Rmu_sc0005310.1_g000016 Rmu_sc0035487.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276040
rosa_rugosa	Rorug06G0403900
rosa_samantha	Rh7AG003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	292
AccII	CGCG	2 cut(s)	75, 204
AciI	CCGC	6 cut(s)	75, 96, 140, 143, 146, 245
AclWI	GGATC	3 cut(s)	214, 227, 408
AflIII	ACRYGT	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
Alw21I	GWGCWC	1 cut(s)	321
AlwI	GGATC	3 cut(s)	214, 227, 408
ApeKI	GCWGC	7 cut(s)	2, 39, 50, 64, 87, 331, 448
AspLEI	GCGC	3 cut(s)	27, 69, 75
AsuHPI	GGTGA	3 cut(s)	176, 263, 381
BamHI	GGATCC	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	156, 321
BbsI	GAAGAC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	5 cut(s)	26, 37, 51, 74, 318
BciT130I	CCWGG	1 cut(s)	275
BfmI	CTRYAG	2 cut(s)	3, 40
BfoI	RGCGCY	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	221, 287
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	83, 343
BpiI	GAAGAC	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	275
BseJI	GATNNNNATC	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	5 cut(s)	26, 37, 51, 74, 318
Bsh1236I	CGCG	2 cut(s)	75, 204
BsiHKAI	GWGCWC	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	91
Bsp1286I	GDGCHC	2 cut(s)	156, 321
Bsp143I	GATC	5 cut(s)	12, 181, 219, 386, 413
BspACI	CCGC	6 cut(s)	75, 96, 140, 143, 146, 245
BspFNI	CGCG	2 cut(s)	75, 204
BspLI	GGNNCC	2 cut(s)	221, 287
BspMAI	CTGCAG	2 cut(s)	7, 44
BspPI	GGATC	3 cut(s)	214, 227, 408
BspQI	GCTCTTC	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	125
BssMI	GATC	5 cut(s)	12, 181, 219, 386, 413
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	6 cut(s)	7, 37, 44, 48, 71, 126
BstFNI	CGCG	2 cut(s)	75, 204
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	3 cut(s)	27, 69, 75
BstKTI	GATC	5 cut(s)	15, 184, 222, 389, 416
BstMBI	GATC	5 cut(s)	12, 181, 219, 386, 413
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 93, 146
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	2 cut(s)	3, 40
BstUI	CGCG	2 cut(s)	75, 204
BstV1I	GCAGC	5 cut(s)	26, 37, 51, 74, 318
BstV2I	GAAGAC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
Cac8I	GCNNGC	6 cut(s)	7, 37, 44, 48, 71, 126
CfoI	GCGC	3 cut(s)	27, 69, 75
CseI	GACGC	2 cut(s)	193, 210
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	8 cut(s)	39, 46, 64, 87, 154, 248, 319, 353
CviKI_1	RGCY	8 cut(s)	39, 46, 64, 87, 154, 248, 319, 353
DpnI	GATC	5 cut(s)	14, 183, 221, 388, 415
DpnII	GATC	5 cut(s)	12, 181, 219, 386, 413
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	156, 321
Eco53kI	GAGCTC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	156, 321
FaeI	CATG	1 cut(s)	132
FaiI	YATR	4 cut(s)	110, 130, 306, 455
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	128
FauI	CCCGC	2 cut(s)	68, 89
FblI	GTMKAC	1 cut(s)	292
FriOI	GRGCYC	2 cut(s)	156, 321
FspI	TGCGCA	1 cut(s)	68
GlaI	GCGC	3 cut(s)	26, 68, 74
HaeII	RGCGCY	1 cut(s)	28
HgaI	GACGC	2 cut(s)	193, 210
HhaI	GCGC	3 cut(s)	27, 69, 75
Hin1II	CATG	1 cut(s)	132
Hin6I	GCGC	3 cut(s)	25, 67, 73
HinP1I	GCGC	3 cut(s)	25, 67, 73
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	194, 251
HphI	GGTGA	3 cut(s)	176, 263, 381
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	198, 217
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	3 cut(s)	167, 294, 387
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	4 cut(s)	5, 42, 308, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 93, 146
Hsp92II	CATG	1 cut(s)	132
HspAI	GCGC	3 cut(s)	25, 67, 73
Kzo9I	GATC	5 cut(s)	12, 181, 219, 386, 413
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	8 cut(s)	13, 21, 28, 55, 106, 183, 260, 287
Lsp1109I	GCAGC	5 cut(s)	26, 37, 51, 74, 318
LweI	GCATC	2 cut(s)	83, 343
MaeIII	GTNAC	2 cut(s)	170, 269
MalI	GATC	5 cut(s)	14, 183, 221, 388, 415
MboI	GATC	5 cut(s)	12, 181, 219, 386, 413
MboII	GAAGA	8 cut(s)	220, 269, 272, 323, 326, 329, 375, 418
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	156, 321
MluI	ACGCGT	1 cut(s)	202
MnlI	CCTC	4 cut(s)	10, 106, 275, 431
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	2 cut(s)	75, 204
MwoI	GCNNNNNNNGC	3 cut(s)	70, 93, 146
NdeII	GATC	5 cut(s)	12, 181, 219, 386, 413
NlaIII	CATG	1 cut(s)	132
NlaIV	GGNNCC	2 cut(s)	221, 287
NmuCI	GTSAC	2 cut(s)	170, 269
NsbI	TGCGCA	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 391
PfeI	GAWTC	2 cut(s)	194, 251
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	221, 287
PstI	CTGCAG	2 cut(s)	7, 44
PsuI	RGATCY	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	321
SalI	GTCGAC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	309
Sau3AI	GATC	5 cut(s)	12, 181, 219, 386, 413
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	2 cut(s)	156, 321
SetI	ASST	2 cut(s)	276, 321
SfaNI	GCATC	2 cut(s)	83, 343
SfcI	CTRYAG	2 cut(s)	3, 40
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
SsiI	CCGC	6 cut(s)	75, 96, 140, 143, 146, 245
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	2 cut(s)	15, 292
TauI	GCSGC	4 cut(s)	143, 146, 149, 248
TfiI	GAWTC	2 cut(s)	194, 251
TseFI	GTSAC	2 cut(s)	170, 269
TseI	GCWGC	7 cut(s)	2, 39, 50, 64, 87, 331, 448
Tsp45I	GTSAC	2 cut(s)	170, 269
XmiI	GTMKAC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.