Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0017940

Physical Location & Seq

Genomic Coordinates Reverse (-)

36977882 .. 36978229

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1239400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAGCGGCGGCGGGAGAGGCAGAGGCACAACAGCACCAACGACGAGCGGGAGCATGACGACGACCATCACCCTTGAGAACGCGGGCTCATCGTCGTCGCAATCGGAAGCAGTGGTGCTGAAGCTGAATCGGAAGAAGAAGAAGCAGGTGTCGTGGAAGGAAGGGACGGTGGACAACGAGTTCATGCAGAAGAAGAGCTCCAAAAAGTGCTGCATCTTCCACAAGCAGAAGCCCTTCGACGAGGACGACAGCGACGATGAGGAACACCATCACCACCACGATCACGATCACAATCACCACCACCACCCCTCACCTTCTTCTTCAGGCATTAACAGCAACTCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000164 GO:0003006 GO:0003674 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0008157 GO:0008287 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0010154 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0022414 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032991 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

116

Amino Acids

12.69

Weight (kDa)

7.22

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPI_Ypi1	PF07491	42 - 88	7e-19	Protein phosphatase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31305
fragaria_vesca	FvH4_5g18370
malus_domestica	MD06G1239400.v1.1
prunus_persica	Prupe.5G243300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0177221
rosa_multiflora	Rmu_sc0001235.1_g000007 Rmu_sc0005310.1_g000016 Rmu_sc0035487.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276040
rosa_rugosa	Rorug06G0403900
rosa_samantha	Rh7AG003900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AccBSI	CCGCTC	2 cut(s)	6, 48
AccII	CGCG	1 cut(s)	83
AciI	CCGC	5 cut(s)	6, 9, 12, 48, 83
AcuI	CTGAAG	2 cut(s)	140, 306
AloI	GAACNNNNNNTCC	2 cut(s)	164, 196
AluBI	AGCT	2 cut(s)	124, 198
AluI	AGCT	2 cut(s)	124, 198
Alw21I	GWGCWC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	233
AsuHPI	GGTGA	4 cut(s)	61, 263, 287, 303
BanII	GRGCYC	2 cut(s)	89, 200
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	2 cut(s)	74, 276
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	3 cut(s)	7, 10, 211
BlsI	GCNGC	3 cut(s)	8, 11, 212
BmsI	GCATC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	2 cut(s)	285, 291
BsaXI	ACNNNNNCTCC	1 cut(s)	323
Bse8I	GATNNNNATC	2 cut(s)	285, 291
BseJI	GATNNNNATC	2 cut(s)	285, 291
BseXI	GCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	89, 200
Bsp143I	GATC	2 cut(s)	280, 286
BspACI	CCGC	5 cut(s)	6, 9, 12, 48, 83
BspFNI	CGCG	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	188
BsrBI	CCGCTC	2 cut(s)	6, 48
BssMI	GATC	2 cut(s)	280, 286
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	283, 289
BstMBI	GATC	2 cut(s)	280, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 333
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	197
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	85
CviAII	CATG	2 cut(s)	55, 184
CviJI	RGCY	4 cut(s)	87, 124, 198, 232
CviKI_1	RGCY	4 cut(s)	87, 124, 198, 232
DpnI	GATC	2 cut(s)	282, 288
DpnII	GATC	2 cut(s)	280, 286
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	198
Eco24I	GRGCYC	2 cut(s)	89, 200
Eco53kI	GAGCTC	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	140, 306
EcoICRI	GAGCTC	1 cut(s)	198
EcoT38I	GRGCYC	2 cut(s)	89, 200
FaeI	CATG	2 cut(s)	58, 187
FaiI	YATR	2 cut(s)	56, 185
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	2 cut(s)	54, 183
FauI	CCCGC	3 cut(s)	5, 41, 76
Fnu4HI	GCNGC	3 cut(s)	7, 10, 211
FriOI	GRGCYC	2 cut(s)	89, 200
Fsp4HI	GCNGC	3 cut(s)	7, 10, 211
GluI	GCNGC	3 cut(s)	7, 10, 211
Hin1II	CATG	2 cut(s)	58, 187
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	4 cut(s)	61, 263, 287, 303
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	106, 132, 347
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	6 cut(s)	46, 64, 97, 100, 242, 257
HpyAV	CCTTC	4 cut(s)	151, 155, 244, 324
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	187, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 333
Hsp92II	CATG	2 cut(s)	58, 187
Kzo9I	GATC	2 cut(s)	280, 286
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	2 cut(s)	51, 203
LpnPI	CCDG	2 cut(s)	131, 309
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	222
MalI	GATC	2 cut(s)	282, 288
MbiI	CCGCTC	2 cut(s)	6, 48
MboI	GATC	2 cut(s)	280, 286
MboII	GAAGA	8 cut(s)	145, 148, 151, 202, 205, 208, 309, 312
MhlI	GDGCHC	2 cut(s)	89, 200
MnlI	CCTC	5 cut(s)	11, 17, 235, 253, 319
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	1 cut(s)	330
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	18, 333
NdeII	GATC	2 cut(s)	280, 286
NlaIII	CATG	2 cut(s)	58, 187
PaqCI	CACCTGC	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 252
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	8, 11, 212
Psp124BI	GAGCTC	1 cut(s)	200
SacI	GAGCTC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	3 cut(s)	7, 10, 211
Sau3AI	GATC	2 cut(s)	280, 286
SduI	GDGCHC	2 cut(s)	89, 200
SetI	ASST	4 cut(s)	126, 150, 200, 316
SfaNI	GCATC	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SsiI	CCGC	5 cut(s)	6, 9, 12, 48, 83
SstI	GAGCTC	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	237
TauI	GCSGC	2 cut(s)	9, 12
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	172
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.