Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001235.1

Orthogroup ID

OG0017940

Physical Location & Seq

Genomic Coordinates Forward (+)

36474 .. 37799

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001235.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgaaactgaggcgcagaatttctcttgttgatggtattgtcaccaatgcttatgaagagttgagggctttggcttgtgcaagaggggggtcgctagacctagtgtgctggtctggccaactgtggggcttcgcgacaggggctgccgcaaggagggtggcgctggagaggaggaggcacggggctgcctggattgaagcaagcatgagcggcggcggcggcagagccccaccgacgacgagcgcgagcgcgagcacgagcgtgaccaccacgatcacccttgagaatccggatgcgtcatcttcgtcaggatccacatctttgccgttggttttgcggctgaatcggaagaagaagcaagtcacttggaaggagggaaccgtcgacaacgagtttatgcagaagaagagctccaaaaagtgttgcatcttccacaaggataagccctttgacgaagacgataccgatgatgacgacgatcaccatgaccaggaccacgaccacgatacccgctcatcttctcaaaatcaaaatcacagcagcgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000164 GO:0003006 GO:0003674 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0008157 GO:0008287 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0010154 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0022414 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032991 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

182

Amino Acids

19.94

Weight (kDa)

7.05

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31305
fragaria_vesca	FvH4_5g18370
malus_domestica	MD06G1239400.v1.1
prunus_persica	Prupe.5G243300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0177221
rosa_multiflora	Rmu_sc0001235.1_g000007 Rmu_sc0005310.1_g000016 Rmu_sc0035487.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276040
rosa_rugosa	Rorug06G0403900
rosa_samantha	Rh7AG003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	210, 513
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	3 cut(s)	134, 245, 251
AccIII	TCCGGA	1 cut(s)	289
AciI	CCGC	7 cut(s)	147, 210, 213, 216, 219, 337, 511
AclWI	GGATC	2 cut(s)	306, 319
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	18
AfiI	CCNNNNNNNGG	3 cut(s)	124, 153, 490
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	2 cut(s)	188, 489
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	1 cut(s)	411
AluI	AGCT	1 cut(s)	411
Alw21I	GWGCWC	2 cut(s)	257, 413
AlwI	GGATC	2 cut(s)	306, 319
AlwNI	CAGNNNCTG	2 cut(s)	143, 546
Aor13HI	TCCGGA	1 cut(s)	289
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	3 cut(s)	143, 185, 540
ApoI	RAATTY	1 cut(s)	18
AspLEI	GCGC	4 cut(s)	15, 163, 245, 251
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	3 cut(s)	34, 268, 473
AvaII	GGWCC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	229, 413
BauI	CACGAG	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	2 cut(s)	257, 413
BbvI	GCAGC	2 cut(s)	130, 172
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	2 cut(s)	190, 491
BfaI	CTAG	2 cut(s)	95, 101
BfoI	RGCGCY	1 cut(s)	164
BisI	GCNGC	9 cut(s)	144, 147, 186, 211, 214, 217, 220, 338, 541
BlsI	GCNGC	9 cut(s)	145, 148, 187, 212, 215, 218, 221, 339, 542
Bme1390I	CCNGG	2 cut(s)	190, 491
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	2 cut(s)	313, 379
BmrFI	CCNGG	2 cut(s)	190, 491
BmsI	GCATC	2 cut(s)	283, 435
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 153, 490
Bse8I	GATNNNNATC	1 cut(s)	316
BseAI	TCCGGA	1 cut(s)	289
BseBI	CCWGG	2 cut(s)	190, 491
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	316
BseLI	CCNNNNNNNGG	3 cut(s)	124, 153, 490
BseRI	GAGGAG	2 cut(s)	184, 187
BseXI	GCAGC	2 cut(s)	130, 172
Bsh1236I	CGCG	3 cut(s)	134, 245, 251
BshFI	GGCC	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	257, 413
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	3 cut(s)	124, 153, 490
BsnI	GGCC	1 cut(s)	117
Bsp1286I	GDGCHC	3 cut(s)	229, 257, 413
Bsp13I	TCCGGA	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	273, 311, 478
Bsp68I	TCGCGA	1 cut(s)	134
BspACI	CCGC	7 cut(s)	147, 210, 213, 216, 219, 337, 511
BspANI	GGCC	1 cut(s)	117
BspEI	TCCGGA	1 cut(s)	289
BspFNI	CGCG	3 cut(s)	134, 245, 251
BspLI	GGNNCC	2 cut(s)	313, 379
BspPI	GGATC	2 cut(s)	306, 319
BspQI	GCTCTTC	1 cut(s)	401
BsrBI	CCGCTC	2 cut(s)	210, 513
BssMI	GATC	3 cut(s)	273, 311, 478
BssSI	CACGAG	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	190, 491
Bst4CI	ACNGT	2 cut(s)	123, 382
Bst6I	CTCTTC	2 cut(s)	51, 401
BstC8I	GCNNGC	3 cut(s)	202, 247, 253
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	3 cut(s)	134, 245, 251
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	4 cut(s)	15, 163, 245, 251
BstKTI	GATC	3 cut(s)	276, 314, 481
BstMBI	GATC	3 cut(s)	273, 311, 478
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 140, 210, 216, 219
BstNI	CCWGG	2 cut(s)	190, 491
BstSCI	CCNGG	2 cut(s)	188, 489
BstUI	CGCG	3 cut(s)	134, 245, 251
BstV1I	GCAGC	2 cut(s)	130, 172
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	298
BtuMI	TCGCGA	1 cut(s)	134
Cac8I	GCNNGC	3 cut(s)	202, 247, 253
CaiI	CAGNNNCTG	2 cut(s)	143, 546
CfoI	GCGC	4 cut(s)	15, 163, 245, 251
Cfr13I	GGNCC	1 cut(s)	493
CseI	GACGC	2 cut(s)	285, 532
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	2 cut(s)	205, 485
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	3 cut(s)	275, 313, 480
DpnII	GATC	3 cut(s)	273, 311, 478
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	51, 401
EarI	CTCTTC	2 cut(s)	51, 401
Ecl136II	GAGCTC	1 cut(s)	411
Eco24I	GRGCYC	2 cut(s)	229, 413
Eco47I	GGWCC	1 cut(s)	493
Eco53kI	GAGCTC	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	188, 489
EcoT38I	GRGCYC	2 cut(s)	229, 413
FaeI	CATG	2 cut(s)	208, 488
FaiI	YATR	4 cut(s)	54, 206, 398, 486
FatI	CATG	2 cut(s)	204, 484
FauI	CCCGC	1 cut(s)	518
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	9 cut(s)	144, 147, 186, 211, 214, 217, 220, 338, 541
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	2 cut(s)	229, 413
Fsp4HI	GCNGC	9 cut(s)	144, 147, 186, 211, 214, 217, 220, 338, 541
FspBI	CTAG	2 cut(s)	95, 101
GlaI	GCGC	4 cut(s)	14, 162, 244, 250
GluI	GCNGC	9 cut(s)	144, 147, 186, 211, 214, 217, 220, 338, 541
GsuI	CTGGAG	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	2 cut(s)	285, 532
HhaI	GCGC	4 cut(s)	15, 163, 245, 251
Hin1II	CATG	2 cut(s)	208, 488
Hin6I	GCGC	4 cut(s)	13, 161, 243, 249
HinP1I	GCGC	4 cut(s)	13, 161, 243, 249
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	2 cut(s)	286, 343
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	3 cut(s)	34, 268, 473
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	2 cut(s)	348, 548
Hpy188III	TCNNGA	3 cut(s)	133, 290, 309
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	4 cut(s)	238, 241, 386, 479
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	123, 382
HpyCH4V	TGCA	3 cut(s)	80, 400, 426
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 140, 210, 216, 219
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	208, 488
HspAI	GCGC	4 cut(s)	13, 161, 243, 249
Kpn2I	TCCGGA	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	273, 311, 478
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	2 cut(s)	130, 172
LweI	GCATC	2 cut(s)	283, 435
MaeI	CTAG	2 cut(s)	95, 101
MaeIII	GTNAC	3 cut(s)	40, 262, 361
MalI	GATC	3 cut(s)	275, 313, 480
MbiI	CCGCTC	2 cut(s)	210, 513
MboI	GATC	3 cut(s)	273, 311, 478
MboII	GAAGA	9 cut(s)	68, 294, 361, 364, 415, 418, 421, 467, 510
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	3 cut(s)	229, 257, 413
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	1 cut(s)	18
MluNI	TGGCCA	1 cut(s)	117
MnlI	CCTC	8 cut(s)	3, 57, 77, 147, 162, 165, 168, 367
Mox20I	TGGCCA	1 cut(s)	117
MroI	TCCGGA	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	117
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	190, 491
MvaI	CCWGG	2 cut(s)	190, 491
MvnI	CGCG	3 cut(s)	134, 245, 251
MwoI	GCNNNNNNNGC	5 cut(s)	114, 140, 210, 216, 219
NdeII	GATC	3 cut(s)	273, 311, 478
NlaIII	CATG	2 cut(s)	208, 488
NlaIV	GGNNCC	2 cut(s)	313, 379
NmuCI	GTSAC	3 cut(s)	40, 262, 361
NruI	TCGCGA	1 cut(s)	134
OliI	CACNNNNGTG	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	286, 343
PkrI	GCNGC	9 cut(s)	145, 148, 187, 212, 215, 218, 221, 339, 542
Psp124BI	GAGCTC	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	188, 489
PspGI	CCWGG	2 cut(s)	188, 489
PspN4I	GGNNCC	2 cut(s)	313, 379
PspPI	GGNCC	1 cut(s)	493
PstNI	CAGNNNCTG	2 cut(s)	143, 546
PsuI	RGATCY	1 cut(s)	311
RruI	TCGCGA	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	413
SalI	GTCGAC	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	401
SatI	GCNGC	9 cut(s)	144, 147, 186, 211, 214, 217, 220, 338, 541
Sau3AI	GATC	3 cut(s)	273, 311, 478
Sau96I	GGNCC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	190, 491
SduI	GDGCHC	3 cut(s)	229, 257, 413
SetI	ASST	2 cut(s)	102, 413
SfaNI	GCATC	2 cut(s)	283, 435
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	7 cut(s)	147, 210, 213, 216, 219, 337, 511
SspMI	CTAG	2 cut(s)	95, 101
SstI	GAGCTC	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	188, 489
TaaI	ACNGT	2 cut(s)	123, 382
TaqI	TCGA	1 cut(s)	384
TasI	AATT	1 cut(s)	18
TauI	GCSGC	6 cut(s)	149, 213, 216, 219, 222, 340
TfiI	GAWTC	2 cut(s)	286, 343
TseFI	GTSAC	3 cut(s)	40, 262, 361
TseI	GCWGC	3 cut(s)	143, 185, 540
Tsp45I	GTSAC	3 cut(s)	40, 262, 361
TspDTI	ATGAA	2 cut(s)	17, 69
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	95, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.