Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005310.1

Orthogroup ID

OG0017940

Physical Location & Seq

Genomic Coordinates Reverse (-)

79880 .. 80218

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005310.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgagcggcggcggcggcagagctccaccgacggcgagcgcgagcgcgagcgtgacgaccaccatcaccgtcgagaatccggatgcgttgtcgtcatcttcgtcgggatccacatcttcgccgttggttttgcggctgaatcggaagaagaagcaagtcacctggaaggagggaaccgtcgacaacgagtttatgcagaagaagagctccaaaaagtgctgcatcttccacaaggataagccctttgacgaagacgataccgatgatgacgacgatcacgaccacgaccacgacgatcccccctcatcttctcaaaatcaaaatcacagcagcgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000164 GO:0003006 GO:0003674 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0008157 GO:0008287 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0010154 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0022414 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032991 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

112

Amino Acids

12.09

Weight (kDa)

5.18

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31305
fragaria_vesca	FvH4_5g18370
malus_domestica	MD06G1239400.v1.1
prunus_persica	Prupe.5G243300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0177221
rosa_multiflora	Rmu_sc0001235.1_g000007 Rmu_sc0005310.1_g000016 Rmu_sc0035487.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276040
rosa_rugosa	Rorug06G0403900
rosa_samantha	Rh7AG003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	2 cut(s)	41, 47
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	5 cut(s)	6, 9, 12, 15, 133
AclWI	GGATC	3 cut(s)	102, 115, 290
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	23, 207
AluI	AGCT	2 cut(s)	23, 207
Alw21I	GWGCWC	2 cut(s)	25, 209
AlwI	GGATC	3 cut(s)	102, 115, 290
AlwNI	CAGNNNCTG	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	219, 330
AspLEI	GCGC	2 cut(s)	41, 47
AsuHPI	GGTGA	2 cut(s)	58, 151
BamHI	GGATCC	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	25, 209
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	2 cut(s)	25, 209
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	2 cut(s)	48, 106
BciT130I	CCWGG	1 cut(s)	163
BisI	GCNGC	7 cut(s)	7, 10, 13, 16, 134, 220, 331
BlsI	GCNGC	7 cut(s)	8, 11, 14, 17, 135, 221, 332
Bme1390I	CCNGG	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	109, 175
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	73, 231
BpiI	GAAGAC	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	112
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	206
Bsh1236I	CGCG	2 cut(s)	41, 47
BsiHKAI	GWGCWC	2 cut(s)	25, 209
BsiSI	CCGG	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	25, 209
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	107, 274, 295
BspACI	CCGC	5 cut(s)	6, 9, 12, 15, 133
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	2 cut(s)	41, 47
BspLI	GGNNCC	2 cut(s)	109, 175
BspPI	GGATC	3 cut(s)	102, 115, 290
BspQI	GCTCTTC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	6
BssMI	GATC	3 cut(s)	107, 274, 295
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	70, 178
Bst6I	CTCTTC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	37, 43, 49
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	2 cut(s)	41, 47
BstHHI	GCGC	2 cut(s)	41, 47
BstKTI	GATC	3 cut(s)	110, 277, 298
BstMBI	GATC	3 cut(s)	107, 274, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 15
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstUI	CGCG	2 cut(s)	41, 47
BstV1I	GCAGC	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	3 cut(s)	37, 43, 49
CaiI	CAGNNNCTG	1 cut(s)	336
CfoI	GCGC	2 cut(s)	41, 47
CseI	GACGC	1 cut(s)	322
CviJI	RGCY	4 cut(s)	23, 136, 207, 241
CviKI_1	RGCY	4 cut(s)	23, 136, 207, 241
DpnI	GATC	3 cut(s)	109, 276, 297
DpnII	GATC	3 cut(s)	107, 274, 295
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Ecl136II	GAGCTC	2 cut(s)	23, 207
Eco24I	GRGCYC	2 cut(s)	25, 209
Eco53kI	GAGCTC	2 cut(s)	23, 207
EcoICRI	GAGCTC	2 cut(s)	23, 207
EcoRII	CCWGG	1 cut(s)	161
EcoT38I	GRGCYC	2 cut(s)	25, 209
FaiI	YATR	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	7 cut(s)	7, 10, 13, 16, 134, 220, 331
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	2 cut(s)	25, 209
Fsp4HI	GCNGC	7 cut(s)	7, 10, 13, 16, 134, 220, 331
GlaI	GCGC	2 cut(s)	40, 46
GluI	GCNGC	7 cut(s)	7, 10, 13, 16, 134, 220, 331
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	2 cut(s)	41, 47
Hin6I	GCGC	2 cut(s)	39, 45
HinP1I	GCGC	2 cut(s)	39, 45
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	76, 139
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	2 cut(s)	58, 151
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	144, 338
Hpy188III	TCNNGA	4 cut(s)	73, 80, 105, 278
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	6 cut(s)	34, 74, 106, 182, 275, 296
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	70, 178
HpyCH4V	TGCA	2 cut(s)	196, 222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 15
HspAI	GCGC	2 cut(s)	39, 45
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	107, 274, 295
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	28, 212
LpnPI	CCDG	3 cut(s)	93, 148, 175
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	2 cut(s)	73, 231
MaeIII	GTNAC	2 cut(s)	52, 157
MalI	GATC	3 cut(s)	109, 276, 297
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	3 cut(s)	107, 274, 295
MboII	GAAGA	9 cut(s)	90, 108, 157, 160, 211, 214, 217, 263, 300
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	2 cut(s)	25, 209
MnlI	CCTC	2 cut(s)	163, 313
MroI	TCCGGA	1 cut(s)	79
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	2 cut(s)	41, 47
MwoI	GCNNNNNNNGC	2 cut(s)	12, 15
NdeII	GATC	3 cut(s)	107, 274, 295
NlaIV	GGNNCC	2 cut(s)	109, 175
NmuCI	GTSAC	2 cut(s)	52, 157
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	4 cut(s)	38, 98, 276, 291
PfeI	GAWTC	2 cut(s)	76, 139
PkrI	GCNGC	7 cut(s)	8, 11, 14, 17, 135, 221, 332
Psp124BI	GAGCTC	2 cut(s)	25, 209
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	109, 175
PstNI	CAGNNNCTG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	107
SacI	GAGCTC	2 cut(s)	25, 209
SalI	GTCGAC	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	197
SatI	GCNGC	7 cut(s)	7, 10, 13, 16, 134, 220, 331
Sau3AI	GATC	3 cut(s)	107, 274, 295
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	25, 209
SetI	ASST	3 cut(s)	25, 164, 209
SfaNI	GCATC	2 cut(s)	73, 231
SsiI	CCGC	5 cut(s)	6, 9, 12, 15, 133
SstI	GAGCTC	2 cut(s)	25, 209
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	70, 178
TaqI	TCGA	2 cut(s)	72, 180
TauI	GCSGC	5 cut(s)	9, 12, 15, 18, 136
TfiI	GAWTC	2 cut(s)	76, 139
TseFI	GTSAC	2 cut(s)	52, 157
TseI	GCWGC	2 cut(s)	219, 330
Tsp45I	GTSAC	2 cut(s)	52, 157
XmiI	GTMKAC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.