FvH4_5g22021

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018446
Physical Location & Seq
Forward (+)
13390444 .. 13390968
525 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22021.t1

Sequence Viewer

Length: 417 bp
ATGGCAGAGAAGACCCACCAGGCTTATCCTGCAGCCCCGACAAATGAATACACAAGAAGCGATGGAGAATCTTTGGTATCCGAAGATGAGCTGAAACGGAAGAAGAGAATCAAATTGTTTACCTACATTGGTATTTTCATTGTGTTTCAGATCATGGTGATGACAGTTTTTGGTCTCACTGTGATGAAAGTGAAGACTCCCAAGGCAAGATTGGGCGAAATCAGTAGTGCCACATTCTTGTACCAAGGTGTGACTGTTGGCCAGGTTGCTATTCCTAAGAGCAAGGCTGGAATGCGTTCCACCAAGAAGATCAATGTCAAAGTTAGTGTGAATACTAATGCTCTGCCAAGCAGTTCTACACTCGAAAGTGAATTGAACAGCGAGGTGCTGACACTGACCAACCAGGTTCAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

139

Amino Acids

15.22

Weight (kDa)

9.73

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 259
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 2 cut(s) 376, 410
AjnI CCWGG 3 cut(s) 18, 261, 402
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 169
BalI TGGCCA 1 cut(s) 261
BbsI GAAGAC 2 cut(s) 17, 200
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 3 cut(s) 20, 263, 404
BciVI GTATCC 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 30
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 3 cut(s) 20, 263, 404
BmrFI CCNGG 3 cut(s) 20, 263, 404
BpiI GAAGAC 2 cut(s) 17, 200
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 201, 244
BseBI CCWGG 3 cut(s) 20, 263, 404
BseDI CCNNGG 2 cut(s) 201, 244
BseXI GCAGC 1 cut(s) 44
BshFI GGCC 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 1 cut(s) 261
Bso31I GGTCTC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 150, 309
BspANI GGCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 201, 244
BssMI GATC 2 cut(s) 150, 309
BssT1I CCWWGG 2 cut(s) 201, 244
Bst2UI CCWGG 3 cut(s) 20, 263, 404
Bst4CI ACNGT 3 cut(s) 166, 181, 256
Bst6I CTCTTC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 276
BstKTI GATC 2 cut(s) 153, 312
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 150, 309
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 3 cut(s) 20, 263, 404
BstSCI CCNGG 3 cut(s) 18, 261, 402
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 44
BstV2I GAAGAC 2 cut(s) 17, 200
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 177, 392
CsiI ACCWGGT 1 cut(s) 402
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 154
CviJI RGCY 5 cut(s) 23, 35, 91, 261, 287
CviKI_1 RGCY 5 cut(s) 23, 35, 91, 261, 287
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 276
DpnI GATC 2 cut(s) 152, 311
DpnII GATC 2 cut(s) 150, 309
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 201, 244
Eco31I GGTCTC 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 18, 261, 402
EcoT14I CCWWGG 2 cut(s) 201, 244
ErhI CCWWGG 2 cut(s) 201, 244
FaeI CATG 1 cut(s) 157
FaiI YATR 1 cut(s) 155
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 261
Hin1II CATG 1 cut(s) 157
HinfI GANTC 3 cut(s) 68, 108, 196
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 82, 150
Hpy8I GTNNAC 1 cut(s) 120
HpyCH4III ACNGT 3 cut(s) 166, 181, 256
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 2 cut(s) 150, 309
LpnPI CCDG 7 cut(s) 5, 32, 42, 248, 273, 275, 389
Lsp1109I GCAGC 1 cut(s) 44
MabI ACCWGGT 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 250
MalI GATC 2 cut(s) 152, 311
MboI GATC 2 cut(s) 150, 309
MboII GAAGA 6 cut(s) 22, 95, 112, 115, 205, 319
MfeI CAATTG 1 cut(s) 410
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 3 cut(s) 113, 371, 410
MluNI TGGCCA 1 cut(s) 261
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 1 cut(s) 376
Mox20I TGGCCA 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 295
MscI TGGCCA 1 cut(s) 261
MslI CAYNNNNRTG 2 cut(s) 158, 182
Msp20I TGGCCA 1 cut(s) 261
MspR9I CCNGG 3 cut(s) 20, 263, 404
MunI CAATTG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 3 cut(s) 20, 263, 404
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 2 cut(s) 150, 309
NlaIII CATG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 250
PctI GAATGC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 68, 108
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 3 cut(s) 18, 261, 402
PspGI CCWGG 3 cut(s) 18, 261, 402
PstI CTGCAG 1 cut(s) 34
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 2 cut(s) 158, 182
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 150, 309
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 3 cut(s) 20, 263, 404
SetI ASST 6 cut(s) 93, 125, 250, 267, 387, 408
SexAI ACCWGGT 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 2 cut(s) 158, 182
Sse9I AATT 3 cut(s) 113, 371, 410
StyD4I CCNGG 3 cut(s) 18, 261, 402
StyI CCWWGG 2 cut(s) 201, 244
TaaI ACNGT 3 cut(s) 166, 181, 256
TaqI TCGA 1 cut(s) 363
TasI AATT 3 cut(s) 113, 371, 410
TfiI GAWTC 2 cut(s) 68, 108
TscAI CASTG 2 cut(s) 184, 399
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 60, 127, 200
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 2 cut(s) 184, 399
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.