Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008884.1

Orthogroup ID

OG0018446

Physical Location & Seq

Genomic Coordinates Reverse (-)

8343 .. 10555

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008884.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggctgagaaaacccaccaggcttatcctttggcaccagaaactggttacaccaggagtgacggggaatctttggtttccaaagatgagctcaaacgcaggaagagaatcagattgtttacctacattggtgttttcattgtctttcagatcatagtcatgaccgtttttggtctcacagtgatgaaagtcaagaccccgaaggtgaggttgggtgcaatcaatgtccaagactttaactctgtccctgcaagtctgcaacaccttcatttgacacaaccttcacaacacaaatcagggtcaagaacacaaattggggatgtaagacttgaacgagctcgattttactccattggattctacgggcacgaaattttcatgtggactcaaaatgttgagctccacctaattgcccttgatttattgcctacaatccaggagtcttcttctaaaagaaccactcaaggccctcaaactgagatagataattccagggcatttaccctgatgaagcgccacatgaagatggccctccagtttgagtacatgaatgaggataacactaacaacctttgggttgcgcctcgtgaacgttttagtaacattcacaattttccggacttagaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

210

Amino Acids

24.29

Weight (kDa)

9.48

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018446)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22021
rosa_chinensis	RchiOBHm_Chr2g0172031
rosa_multiflora	Rmu_co8024338.1_g000001 Rmu_sc0000546.1_g000071 Rmu_sc0002934.1_g000036 Rmu_sc0004223.1_g000013 Rmu_sc0005506.1_g000015 Rmu_sc0008884.1_g000005 Rmu_sc0016354.1_g000003
rosa_roxburghii	Rroxscaffold_5G00347380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccIII	TCCGGA	1 cut(s)	616
AclI	AACGTT	1 cut(s)	592
AcsI	RAATTY	1 cut(s)	372
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	332
AjnI	CCWGG	4 cut(s)	18, 53, 435, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	3 cut(s)	91, 338, 400
AluI	AGCT	3 cut(s)	91, 338, 400
Alw21I	GWGCWC	3 cut(s)	93, 340, 402
Alw26I	GTCTC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	616
AoxI	GGCC	2 cut(s)	466, 528
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	2 cut(s)	516, 583
AspS9I	GGNCC	2 cut(s)	467, 529
AsuHPI	GGTGA	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	3 cut(s)	93, 340, 402
BauI	CACGAG	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	3 cut(s)	93, 340, 402
BccI	CCATC	1 cut(s)	520
BciT130I	CCWGG	4 cut(s)	20, 55, 437, 493
BcoDI	GTCTC	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	517
Bme1390I	CCNGG	4 cut(s)	20, 55, 437, 493
BmgT120I	GGNCC	2 cut(s)	467, 529
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	4 cut(s)	20, 55, 437, 493
BpiI	GAAGAC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	616
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	49, 535
BseAI	TCCGGA	1 cut(s)	616
BseBI	CCWGG	4 cut(s)	20, 55, 437, 493
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	49, 535
BseSI	GKGCMC	1 cut(s)	369
BshFI	GGCC	2 cut(s)	468, 530
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	3 cut(s)	93, 340, 402
BsiSI	CCGG	1 cut(s)	617
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	468, 530
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	4 cut(s)	93, 340, 369, 402
Bsp13I	TCCGGA	1 cut(s)	616
Bsp143I	GATC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	468, 530
BspCNI	CTCAG	1 cut(s)	469
BspEI	TCCGGA	1 cut(s)	616
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	49, 535
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	585
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	4 cut(s)	20, 55, 437, 493
Bst4CI	ACNGT	2 cut(s)	166, 181
Bst6I	CTCTTC	1 cut(s)	98
BstDEI	CTNAG	3 cut(s)	6, 477, 622
BstF5I	GGATG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	2 cut(s)	516, 583
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	150
BstNI	CCWGG	4 cut(s)	20, 55, 437, 493
BstSCI	CCNGG	4 cut(s)	18, 53, 435, 491
BstSLI	GKGCMC	1 cut(s)	369
BstV2I	GAAGAC	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	468, 530
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	44
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	2 cut(s)	516, 583
Cfr13I	GGNCC	2 cut(s)	467, 529
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	4 cut(s)	160, 379, 520, 547
CviJI	RGCY	7 cut(s)	5, 23, 91, 338, 400, 468, 530
CviKI_1	RGCY	7 cut(s)	5, 23, 91, 338, 400, 468, 530
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	3 cut(s)	6, 477, 622
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	3 cut(s)	91, 338, 400
Eco24I	GRGCYC	3 cut(s)	93, 340, 402
Eco31I	GGTCTC	1 cut(s)	179
Eco53kI	GAGCTC	3 cut(s)	91, 338, 400
EcoICRI	GAGCTC	3 cut(s)	91, 338, 400
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	4 cut(s)	18, 53, 435, 491
EcoT38I	GRGCYC	3 cut(s)	93, 340, 402
FaeI	CATG	4 cut(s)	163, 382, 523, 550
FaiI	YATR	6 cut(s)	155, 161, 380, 521, 548, 631
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	4 cut(s)	159, 378, 519, 546
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	3 cut(s)	93, 340, 402
GlaI	GCGC	2 cut(s)	515, 582
GsuI	CTGGAG	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	468, 530
HapII	CCGG	1 cut(s)	617
HhaI	GCGC	2 cut(s)	516, 583
Hin1II	CATG	4 cut(s)	163, 382, 523, 550
Hin6I	GCGC	2 cut(s)	514, 581
HinP1I	GCGC	2 cut(s)	514, 581
HinfI	GANTC	5 cut(s)	68, 108, 357, 385, 440
HpaII	CCGG	1 cut(s)	617
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	120, 384, 590
Hpy188I	TCNGA	2 cut(s)	113, 150
Hpy188III	TCNNGA	5 cut(s)	160, 193, 303, 587, 617
Hpy8I	GTNNAC	3 cut(s)	120, 384, 590
HpyAV	CCTTC	3 cut(s)	196, 275, 291
HpyCH4III	ACNGT	2 cut(s)	166, 181
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	3 cut(s)	218, 251, 259
HpyF3I	CTNAG	3 cut(s)	6, 477, 622
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	4 cut(s)	163, 382, 523, 550
HspAI	GCGC	2 cut(s)	514, 581
Kpn2I	TCCGGA	1 cut(s)	616
Kzo9I	GATC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	405
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	3 cut(s)	47, 59, 599
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	4 cut(s)	115, 435, 438, 535
MhlI	GDGCHC	4 cut(s)	93, 340, 369, 402
MluCI	AATT	5 cut(s)	312, 372, 408, 487, 610
MlyI	GAGTC	2 cut(s)	379, 449
MnlI	CCTC	5 cut(s)	201, 480, 542, 547, 594
MroI	TCCGGA	1 cut(s)	616
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	3 cut(s)	158, 182, 524
MspI	CCGG	1 cut(s)	617
MspR9I	CCNGG	4 cut(s)	20, 55, 437, 493
MvaI	CCWGG	4 cut(s)	20, 55, 437, 493
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	4 cut(s)	163, 382, 523, 550
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	59
PagI	TCATGA	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	68, 108, 357
PflMI	CCANNNNNTGG	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	435
PleI	GAGTC	2 cut(s)	379, 448
PpsI	GAGTC	2 cut(s)	379, 448
Psp124BI	GAGCTC	3 cut(s)	93, 340, 402
Psp1406I	AACGTT	1 cut(s)	592
Psp6I	CCWGG	4 cut(s)	18, 53, 435, 491
PspGI	CCWGG	4 cut(s)	18, 53, 435, 491
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	467, 529
PstNI	CAGNNNCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
RseI	CAYNNNNRTG	3 cut(s)	158, 182, 524
SacI	GAGCTC	3 cut(s)	93, 340, 402
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	2 cut(s)	467, 529
SchI	GAGTC	2 cut(s)	379, 449
ScrFI	CCNGG	4 cut(s)	20, 55, 437, 493
SduI	GDGCHC	4 cut(s)	93, 340, 369, 402
SmiMI	CAYNNNNRTG	3 cut(s)	158, 182, 524
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
Sse9I	AATT	5 cut(s)	312, 372, 408, 487, 610
SstI	GAGCTC	3 cut(s)	93, 340, 402
StyD4I	CCNGG	4 cut(s)	18, 53, 435, 491
TaaI	ACNGT	2 cut(s)	166, 181
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	1 cut(s)	340
TasI	AATT	5 cut(s)	312, 372, 408, 487, 610
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	3 cut(s)	68, 108, 357
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	7 cut(s)	127, 200, 257, 367, 524, 536, 563
TspRI	CASTG	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.