Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018446

Physical Location & Seq

Genomic Coordinates Forward (+)

18752597 .. 18754419

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGAGATGGGAGATCGAGCAGAGGGATATGGGAGATGGATTCGATCGGATGGGATGGGTTCTGTGATGCTCGATCGGATGGGATGCGTTCTGTGATGTTATTTGAGGGAGAGGAGATCGAGCAGAGGGAGATGGGAGATGGGATCGAGCAGAGGGAGGAGGGAGATGGGAGATGGGAGCGAGCAGAGGGAGATGGGAGCGAGCAGAGGGAGGAGGGAGATGAGAGATGGGATCGAGAGACTGGGTGGCAGATGGCTGATATCAAACTTGAACGAGCTCGATTTTACTCCATTGGTTCTACGGGCACGGGATATTTCATGTGGGCTCATAATGTTGAGATCCACCTAATTGCCCTTGATTTATTGCGTACAATCCAAGAGCCATGTTCGAAGGAACTCGCTCAAGACTCTCAAACCGAGATAGATAATTCTAGGGCACTTACCCCGATGAAACGTCACATAGAGATGGCATTCCAGTTTGAGTACATGAATGAGGATAGCGTTAGACACCTTTGGGTAGCGCTTCGTGAACATTTTAACAACATTCACAATTTTTCGAACTTAGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

22.17

Weight (kDa)

4.6

Isoelectric Point (pI)

66.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018446)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22021
rosa_chinensis	RchiOBHm_Chr2g0172031
rosa_multiflora	Rmu_co8024338.1_g000001 Rmu_sc0000546.1_g000071 Rmu_sc0002934.1_g000036 Rmu_sc0004223.1_g000013 Rmu_sc0005506.1_g000015 Rmu_sc0008884.1_g000005 Rmu_sc0016354.1_g000003
rosa_roxburghii	Rroxscaffold_5G00347380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	152, 240, 334
AfaI	GTAC	2 cut(s)	370, 485
AfeI	AGCGCT	1 cut(s)	522
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	152, 240, 334
Aor51HI	AGCGCT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	523
AsuII	TTCGAA	2 cut(s)	389, 557
BaeGI	GKGCMC	2 cut(s)	308, 439
BanII	GRGCYC	2 cut(s)	280, 328
Bbv12I	GWGCWC	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	524
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	58, 75
BmuI	ACTGGG	1 cut(s)	252
Bpu14I	TTCGAA	2 cut(s)	389, 557
BpuEI	CTTGAG	1 cut(s)	387
Bse1I	ACTGG	2 cut(s)	247, 475
BseGI	GGATG	4 cut(s)	56, 61, 85, 90
BseNI	ACTGG	2 cut(s)	247, 475
BseRI	GAGGAG	3 cut(s)	128, 173, 227
BseSI	GKGCMC	2 cut(s)	308, 439
Bsh1285I	CGRYCG	2 cut(s)	48, 77
BsiEI	CGRYCG	2 cut(s)	48, 77
BsiHKAI	GWGCWC	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	470
Bsp119I	TTCGAA	2 cut(s)	389, 557
Bsp1286I	GDGCHC	4 cut(s)	280, 308, 328, 439
Bsp143I	GATC	7 cut(s)	14, 45, 74, 117, 144, 232, 339
BspPI	GGATC	3 cut(s)	152, 240, 334
BspT104I	TTCGAA	2 cut(s)	389, 557
BsrI	ACTGG	2 cut(s)	247, 475
BssMI	GATC	7 cut(s)	14, 45, 74, 117, 144, 232, 339
BstBI	TTCGAA	2 cut(s)	389, 557
BstC8I	GCNNGC	2 cut(s)	183, 203
BstDEI	CTNAG	1 cut(s)	562
BstF5I	GGATG	4 cut(s)	56, 61, 85, 90
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	7 cut(s)	17, 48, 77, 120, 147, 235, 342
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	7 cut(s)	14, 45, 74, 117, 144, 232, 339
BstMCI	CGRYCG	2 cut(s)	48, 77
BstSLI	GKGCMC	2 cut(s)	308, 439
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BtsCI	GGATG	4 cut(s)	56, 61, 85, 90
Cac8I	GCNNGC	2 cut(s)	183, 203
CfoI	GCGC	1 cut(s)	523
Csp6I	GTAC	2 cut(s)	369, 484
CviAII	CATG	4 cut(s)	319, 384, 487, 570
CviJI	RGCY	4 cut(s)	257, 278, 326, 382
CviKI_1	RGCY	4 cut(s)	257, 278, 326, 382
CviQI	GTAC	2 cut(s)	369, 484
DdeI	CTNAG	1 cut(s)	562
DpnI	GATC	7 cut(s)	16, 47, 76, 119, 146, 234, 341
DpnII	GATC	7 cut(s)	14, 45, 74, 117, 144, 232, 339
Ecl136II	GAGCTC	1 cut(s)	278
Eco24I	GRGCYC	2 cut(s)	280, 328
Eco32I	GATATC	1 cut(s)	262
Eco47III	AGCGCT	1 cut(s)	522
Eco53kI	GAGCTC	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	278
EcoRV	GATATC	1 cut(s)	262
EcoT38I	GRGCYC	2 cut(s)	280, 328
FaeI	CATG	4 cut(s)	322, 387, 490, 573
FaiI	YATR	7 cut(s)	31, 320, 330, 385, 461, 488, 571
FatI	CATG	4 cut(s)	318, 383, 486, 569
FokI	GGATG	4 cut(s)	63, 68, 92, 97
FriOI	GRGCYC	2 cut(s)	280, 328
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	524
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	4 cut(s)	322, 387, 490, 573
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HinfI	GANTC	2 cut(s)	41, 407
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	2 cut(s)	50, 79
Hpy188III	TCNNGA	3 cut(s)	236, 404, 527
Hpy8I	GTNNAC	1 cut(s)	530
HpyAV	CCTTC	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	454
HpyF3I	CTNAG	1 cut(s)	562
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	4 cut(s)	322, 387, 490, 573
HspAI	GCGC	1 cut(s)	521
Kzo9I	GATC	7 cut(s)	14, 45, 74, 117, 144, 232, 339
LmnI	GCTCC	2 cut(s)	178, 198
LpnPI	CCDG	2 cut(s)	228, 488
LweI	GCATC	2 cut(s)	58, 75
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	7 cut(s)	16, 47, 76, 119, 146, 234, 341
MboI	GATC	7 cut(s)	14, 45, 74, 117, 144, 232, 339
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	4 cut(s)	280, 308, 328, 439
MluCI	AATT	3 cut(s)	348, 427, 550
MlyI	GAGTC	1 cut(s)	401
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	470
NdeII	GATC	7 cut(s)	14, 45, 74, 117, 144, 232, 339
NlaIII	CATG	4 cut(s)	322, 387, 490, 573
NmuCI	GTSAC	1 cut(s)	455
NspV	TTCGAA	2 cut(s)	389, 557
PctI	GAATGC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	41
Ple19I	CGATCG	2 cut(s)	48, 77
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	339
PvuI	CGATCG	2 cut(s)	48, 77
RsaI	GTAC	2 cut(s)	370, 485
RsaNI	GTAC	2 cut(s)	369, 484
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	537
Sau3AI	GATC	7 cut(s)	14, 45, 74, 117, 144, 232, 339
SchI	GAGTC	1 cut(s)	401
SduI	GDGCHC	4 cut(s)	280, 308, 328, 439
SetI	ASST	4 cut(s)	280, 348, 457, 513
SfaNI	GCATC	2 cut(s)	58, 75
SfuI	TTCGAA	2 cut(s)	389, 557
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	3 cut(s)	348, 427, 550
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	1 cut(s)	280
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	9 cut(s)	17, 44, 73, 120, 147, 235, 280, 389, 557
TasI	AATT	3 cut(s)	348, 427, 550
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TseFI	GTSAC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	3 cut(s)	307, 464, 503
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.