Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8024338.1

Orthogroup ID

OG0018446

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 534

Gene Structure 533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8024338.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 386 bp

atggctgagaaaacccaccaggcttatcctttggcaccagaaactggttacaccaggagtgacggggaatctttggtttccaaagatgagctcaaacgcaggaagagaatcagattgtttacctacattggtgttttcattgtctttcagatcatagtcatgaccgtttttggtctcacagtgatgaaagtcaagaccccgaaggtgaggttgggtgcaatcaatgtccaagactttaactctgtccctgcaagggctgctattgggcaactgactgttcctaagagcaaggctggaatgcgttccaccaagaagacgaatgtcgaagtcagtcagaatgctagtggattgccaagcagttcgaatcttggcagtgaattgaacat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

128

Amino Acids

14.01

Weight (kDa)

10.24

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018446)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22021
rosa_chinensis	RchiOBHm_Chr2g0172031
rosa_multiflora	Rmu_co8024338.1_g000001 Rmu_sc0000546.1_g000071 Rmu_sc0002934.1_g000036 Rmu_sc0004223.1_g000013 Rmu_sc0005506.1_g000015 Rmu_sc0008884.1_g000005 Rmu_sc0016354.1_g000003
rosa_roxburghii	Rroxscaffold_5G00347380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	44, 253
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	18, 53
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	244
BciT130I	CCWGG	2 cut(s)	20, 55
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	342
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	20, 55
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	20, 55
BoxI	GACNNNNGTC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 253
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	20, 55
BseLI	CCNNNNNNNGG	2 cut(s)	44, 253
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	44, 253
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	2 cut(s)	303, 343
Bso31I	GGTCTC	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	20, 55
Bst4CI	ACNGT	3 cut(s)	166, 181, 277
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	6, 282
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	2 cut(s)	20, 55
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSCI	CCNGG	2 cut(s)	18, 53
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	320
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	186, 379
CaiI	CAGNNNCTG	1 cut(s)	44
CciI	TCATGA	1 cut(s)	159
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	5 cut(s)	5, 23, 91, 257, 293
CviKI_1	RGCY	5 cut(s)	5, 23, 91, 257, 293
DdeI	CTNAG	2 cut(s)	6, 282
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	18, 53
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	1 cut(s)	163
FaiI	YATR	2 cut(s)	155, 161
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	258
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	3 cut(s)	68, 108, 364
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	113, 150, 336
Hpy188III	TCNNGA	2 cut(s)	160, 193
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	3 cut(s)	166, 181, 277
HpyCH4V	TGCA	2 cut(s)	218, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	2 cut(s)	6, 282
Hsp92II	CATG	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	9 cut(s)	5, 30, 32, 40, 51, 67, 85, 261, 279
Lsp1109I	GCAGC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	47, 59
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	2 cut(s)	115, 325
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	377
MnlI	CCTC	1 cut(s)	201
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	2 cut(s)	158, 182
MspR9I	CCNGG	2 cut(s)	20, 55
Mva1269I	GAATGC	2 cut(s)	303, 343
MvaI	CCWGG	2 cut(s)	20, 55
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	59
NspV	TTCGAA	1 cut(s)	362
PagI	TCATGA	1 cut(s)	159
PctI	GAATGC	2 cut(s)	303, 343
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	3 cut(s)	68, 108, 364
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	259
PshAI	GACNNNNGTC	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	18, 53
PspGI	CCWGG	2 cut(s)	18, 53
PspN4I	GGNNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	44
RseI	CAYNNNNRTG	2 cut(s)	158, 182
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	20, 55
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	4 cut(s)	93, 125, 207, 212
SfuI	TTCGAA	1 cut(s)	362
SmiMI	CAYNNNNRTG	2 cut(s)	158, 182
Sse9I	AATT	1 cut(s)	377
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	18, 53
TaaI	ACNGT	3 cut(s)	166, 181, 277
TaqI	TCGA	2 cut(s)	324, 362
TasI	AATT	1 cut(s)	377
TfiI	GAWTC	3 cut(s)	68, 108, 364
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	186, 379
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	127, 200
TspRI	CASTG	2 cut(s)	186, 379
Van91I	CCANNNNNTGG	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.