Rmu_sc0005506.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005506.1
OG0018446
Physical Location & Seq
Reverse (-)
53419 .. 53772
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005506.1_g000015.1.cds

Sequence Viewer

Length: 354 bp
atgcttgactcaacaggctcggactaccacagttgggtagccgatgttgagaaccatctcacttcaaagggaatattacccataatccaggcgcccaacccggatcttgtgtttgtgcgaacacctacaaagcatgctcaagcagttatcttgatgcgacgccatatggacaaggcactgagattggagtatatgtcgaataagaatgcaagagagctatgggtagcactagaagagcgttttggtaatgtccaagattccctcctccctgatttgaaggttcaatggaataatctgcactttactgatttcaagtctgttgctaaatataattcagaagcgcttcgcatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

117

Amino Acids

13.52

Weight (kDa)

6.97

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 1 cut(s) 111
AcyI GRCGYC 2 cut(s) 92, 160
AfeI AGCGCT 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 4 cut(s) 66, 277, 284, 313
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AlwI GGATC 1 cut(s) 111
Aor51HI AGCGCT 1 cut(s) 342
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 2 cut(s) 94, 343
AsuC2I CCSGG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 91
BccI CCATC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 2 cut(s) 95, 344
Bme1390I CCNGG 2 cut(s) 89, 101
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 89, 101
BmsI GCATC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 2 cut(s) 92, 160
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 34
BsmI GAATGC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 91
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 2 cut(s) 92, 160
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 2 cut(s) 92, 160
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 179
BstH2I RGCGCY 2 cut(s) 95, 344
BstHHI GCGC 2 cut(s) 94, 343
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 87, 99
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 2 cut(s) 94, 343
CseI GACGC 1 cut(s) 168
CviAII CATG 1 cut(s) 134
CviJI RGCY 3 cut(s) 18, 41, 217
CviKI_1 RGCY 3 cut(s) 18, 41, 217
DdeI CTNAG 1 cut(s) 179
DinI GGCGCC 1 cut(s) 93
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco47III AGCGCT 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 87
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
FaeI CATG 1 cut(s) 137
FatI CATG 1 cut(s) 133
FauNDI CATATG 1 cut(s) 165
FspBI CTAG 1 cut(s) 230
GlaI GCGC 2 cut(s) 93, 342
HaeII RGCGCY 2 cut(s) 95, 344
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 168
HhaI GCGC 2 cut(s) 94, 343
Hin1I GRCGYC 2 cut(s) 92, 160
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 2 cut(s) 92, 341
HinP1I GCGC 2 cut(s) 92, 341
HinfI GANTC 2 cut(s) 8, 257
HpaII CCGG 1 cut(s) 101
Hpy188I TCNGA 2 cut(s) 22, 337
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 209, 298
HpyF3I CTNAG 1 cut(s) 179
Hsp92I GRCGYC 2 cut(s) 92, 160
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 2 cut(s) 92, 341
KasI GGCGCC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 74, 101, 114, 282
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 230
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 245
MflI RGATCY 1 cut(s) 103
MluCI AATT 1 cut(s) 331
Mly113I GGCGCC 1 cut(s) 92
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 2 cut(s) 272, 275
MroXI GAANNNNTTC 1 cut(s) 342
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 89, 101
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 89
NarI GGCGCC 1 cut(s) 92
NciI CCSGG 1 cut(s) 101
NdeI CATATG 1 cut(s) 165
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 93
NspI RCATGY 1 cut(s) 137
PaeI GCATGC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 228
PctI GAATGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 257
PleI GAGTC 1 cut(s) 2
PluTI GGCGCC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 228
Sau3AI GATC 1 cut(s) 103
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 2 cut(s) 89, 101
SetI ASST 3 cut(s) 127, 219, 282
SfaNI GCATC 1 cut(s) 144
SfoI GGCGCC 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 137
Sse9I AATT 1 cut(s) 331
SspDI GGCGCC 1 cut(s) 91
SspI AATATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 87, 99
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 197
TasI AATT 1 cut(s) 331
TfiI GAWTC 1 cut(s) 257
TscAI CASTG 1 cut(s) 183
TspRI CASTG 1 cut(s) 183
XceI RCATGY 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.