Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002934.1

Orthogroup ID

OG0018446

Physical Location & Seq

Genomic Coordinates Reverse (-)

131316 .. 131801

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002934.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ctggatacgattcttgagcctatcccgaaagtactaactattgagcatgctcaagctttggaagcaaatagagcagccttggaggcaaataaggtgaaagctatcatcctaatgactcgtcatatggatgattcgctccagttcgagtatatgaatgaagaataccccagaaggctgtgggtctcactcgaagaaagatttggcaacgtccatgactccctgcttcctaacctagaagtaagatggcatagcctccgcttctatgatttcaattcagttcttgactacaactcggaaccacttcgcattaaatctttgatggaattatgtggaaaagatatcacatatgcaatgttgattgagaagactctctctatcttccccgtctctactttgatggttgctaagaactatcaaatcgatgttactgcaggacggatcacagggtttcatgagctcattggagctatgattaatgttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

161

Amino Acids

18.58

Weight (kDa)

5.35

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018446)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22021
rosa_chinensis	RchiOBHm_Chr2g0172031
rosa_multiflora	Rmu_co8024338.1_g000001 Rmu_sc0000546.1_g000071 Rmu_sc0002934.1_g000036 Rmu_sc0004223.1_g000013 Rmu_sc0005506.1_g000015 Rmu_sc0008884.1_g000005 Rmu_sc0016354.1_g000003
rosa_roxburghii	Rroxscaffold_5G00347380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	446
AfaI	GTAC	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	4 cut(s)	56, 101, 457, 467
AluI	AGCT	4 cut(s)	56, 101, 457, 467
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	2 cut(s)	187, 391
AlwI	GGATC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	74
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	3 cut(s)	237, 313, 391
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BcoDI	GTCTC	2 cut(s)	187, 391
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	429
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmcAI	AGTACT	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	35, 36
Bsa29I	ATCGAT	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	105, 133
BseMI	GCAATG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	459
BsmAI	GTCTC	2 cut(s)	187, 391
BsmBI	CGTCTC	1 cut(s)	391
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	438
BspACI	CCGC	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	297
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	2 cut(s)	105, 133
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	2 cut(s)	187, 391
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 71, 83
BstNSI	RCATGY	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	420
BsuTUI	ATCGAT	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	105, 133
Cac8I	GCNNGC	1 cut(s)	48
CciI	TCATGA	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	3 cut(s)	47, 212, 452
CviJI	RGCY	8 cut(s)	19, 56, 77, 101, 175, 252, 457, 467
CviKI_1	RGCY	8 cut(s)	19, 56, 77, 101, 175, 252, 457, 467
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	457
EcoICRI	GAGCTC	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	391
FaeI	CATG	3 cut(s)	50, 215, 455
FatI	CATG	3 cut(s)	46, 211, 451
FauNDI	CATATG	2 cut(s)	123, 346
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	92, 140
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	122
Hin1II	CATG	3 cut(s)	50, 215, 455
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	5 cut(s)	10, 115, 131, 215, 367
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	4 cut(s)	14, 25, 281, 452
HpyAV	CCTTC	1 cut(s)	165
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	350, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 71, 83
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	50, 215, 455
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	141, 464
LpnPI	CCDG	5 cut(s)	152, 181, 233, 417, 429
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	4 cut(s)	170, 203, 370, 376
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	2 cut(s)	271, 323
MlyI	GAGTC	3 cut(s)	109, 209, 361
MnlI	CCTC	2 cut(s)	76, 263
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	3 cut(s)	309, 474, 484
MslI	CAYNNNNRTG	2 cut(s)	110, 126
MwoI	GCNNNNNNNGC	3 cut(s)	62, 71, 83
NdeI	CATATG	2 cut(s)	123, 346
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	3 cut(s)	50, 215, 455
NlaIV	GGNNCC	1 cut(s)	297
NspI	RCATGY	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	50
PagI	TCATGA	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	10, 131
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	3 cut(s)	109, 209, 361
PpsI	GAGTC	3 cut(s)	109, 209, 361
PshBI	ATTAAT	1 cut(s)	474
Psp124BI	GAGCTC	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	433
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	2 cut(s)	110, 126
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	309, 474, 484
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	438
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	3 cut(s)	109, 209, 361
SduI	GDGCHC	1 cut(s)	459
SetI	ASST	7 cut(s)	58, 96, 103, 210, 234, 459, 469
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	2 cut(s)	110, 126
SmlI	CTYRAG	2 cut(s)	14, 51
SmoI	CTYRAG	2 cut(s)	14, 51
SphI	GCATGC	1 cut(s)	50
Sse9I	AATT	2 cut(s)	271, 323
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	144, 189, 420
TasI	AATT	2 cut(s)	271, 323
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	10, 131
Tru1I	TTAA	3 cut(s)	309, 474, 484
Tru9I	TTAA	3 cut(s)	309, 474, 484
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	167, 171, 440
TspGWI	ACGGA	1 cut(s)	451
VspI	ATTAAT	1 cut(s)	474
XceI	RCATGY	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.