Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g24890 |
| malus_domestica | MD06G1011600.v1.1 |
| prunus_persica | Prupe.5G014300_v2.0.a1 Prupe.5G014300_v2.0.a1 Prupe.5G014300_v2.0.a1 Prupe.5G014300_v2.0.a1 |
| pyrus_communis | pycom06g00980 |
| rosa_chinensis | RchiOBHm_Chr7g0215211 |
| rosa_laevigata | RLG00000002683 |
| rosa_multiflora | Rmu_co8287801.1_g000001 Rmu_sc0006273.1_g000013 Rmu_sc0029270.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00244470 Rroxscaffold_3G00244480 |
| rosa_rugosa | Rorug07G0150700 |
| rosa_samantha | Rh7AG287700 Rh7BG279400 Rh7CG307500 Rh7DG291000 |
| rosa_wichuraiana | Rw7G024560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 984 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 389 |
| AatII | GACGTC | 1 cut(s) | 1382 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 409 |
| AccBSI | CCGCTC | 2 cut(s) | 303, 810 |
| AccI | GTMKAC | 2 cut(s) | 35, 252 |
| AccII | CGCG | 4 cut(s) | 312, 435, 446, 1026 |
| AclWI | GGATC | 4 cut(s) | 61, 62, 927, 1283 |
| AcoI | YGGCCR | 3 cut(s) | 48, 262, 1095 |
| AcyI | GRCGYC | 4 cut(s) | 294, 387, 423, 1379 |
| AfaI | GTAC | 1 cut(s) | 419 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 237, 409, 547, 1132, 1133 |
| AflIII | ACRYGT | 1 cut(s) | 433 |
| AgsI | TTSAA | 4 cut(s) | 955, 997, 1243, 1309 |
| AjnI | CCWGG | 4 cut(s) | 50, 236, 402, 757 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 809, 841 |
| AluBI | AGCT | 1 cut(s) | 934 |
| AluI | AGCT | 1 cut(s) | 934 |
| Alw21I | GWGCWC | 1 cut(s) | 473 |
| Alw26I | GTCTC | 1 cut(s) | 506 |
| Alw44I | GTGCAC | 1 cut(s) | 469 |
| AlwI | GGATC | 4 cut(s) | 61, 62, 927, 1283 |
| AoxI | GGCC | 7 cut(s) | 48, 204, 208, 262, 462, 538, 1095 |
| ApaLI | GTGCAC | 1 cut(s) | 469 |
| ApeKI | GCWGC | 4 cut(s) | 750, 859, 1091, 1190 |
| AspLEI | GCGC | 3 cut(s) | 312, 655, 688 |
| AspS9I | GGNCC | 4 cut(s) | 204, 209, 462, 539 |
| AsuC2I | CCSGG | 1 cut(s) | 650 |
| AsuHPI | GGTGA | 6 cut(s) | 10, 80, 148, 643, 1066, 1093 |
| AxyI | CCTNAGG | 1 cut(s) | 458 |
| BaeGI | GKGCMC | 1 cut(s) | 473 |
| BanII | GRGCYC | 1 cut(s) | 650 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1301, 1333 |
| BauI | CACGAG | 1 cut(s) | 689 |
| BbsI | GAAGAC | 2 cut(s) | 614, 1382 |
| Bbv12I | GWGCWC | 1 cut(s) | 473 |
| BbvI | GCAGC | 4 cut(s) | 737, 846, 1078, 1177 |
| BceAI | ACGGC | 5 cut(s) | 63, 374, 436, 496, 699 |
| BciT130I | CCWGG | 4 cut(s) | 52, 238, 404, 759 |
| BcnI | CCSGG | 1 cut(s) | 650 |
| BcoDI | GTCTC | 1 cut(s) | 506 |
| BfoI | RGCGCY | 1 cut(s) | 689 |
| BglII | AGATCT | 1 cut(s) | 1143 |
| Bme1390I | CCNGG | 5 cut(s) | 52, 238, 404, 650, 759 |
| BmgT120I | GGNCC | 4 cut(s) | 204, 209, 462, 539 |
| BmiI | GGNNCC | 2 cut(s) | 647, 1176 |
| BmrFI | CCNGG | 5 cut(s) | 52, 238, 404, 650, 759 |
| BmsI | GCATC | 1 cut(s) | 661 |
| BpiI | GAAGAC | 2 cut(s) | 614, 1382 |
| BpmI | CTGGAG | 1 cut(s) | 530 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1341 |
| BpuMI | CCSGG | 1 cut(s) | 650 |
| BsaHI | GRCGYC | 4 cut(s) | 294, 387, 423, 1379 |
| BsaJI | CCNNGG | 1 cut(s) | 259 |
| BsaWI | WCCGGW | 1 cut(s) | 116 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 164, 194, 350, 380 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 237, 409, 547, 1132, 1133 |
| Bse118I | RCCGGY | 1 cut(s) | 206 |
| Bse1I | ACTGG | 1 cut(s) | 1389 |
| Bse21I | CCTNAGG | 1 cut(s) | 458 |
| Bse3DI | GCAATG | 1 cut(s) | 879 |
| BseBI | CCWGG | 4 cut(s) | 52, 238, 404, 759 |
| BseDI | CCNNGG | 1 cut(s) | 259 |
| BseGI | GGATG | 3 cut(s) | 141, 297, 1126 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 237, 409, 547, 1132, 1133 |
| BseMI | GCAATG | 1 cut(s) | 879 |
| BseMII | CTCAG | 1 cut(s) | 472 |
| BseNI | ACTGG | 1 cut(s) | 1389 |
| BseRI | GAGGAG | 4 cut(s) | 248, 446, 545, 725 |
| BseSI | GKGCMC | 1 cut(s) | 473 |
| BseX3I | CGGCCG | 1 cut(s) | 262 |
| BseXI | GCAGC | 4 cut(s) | 737, 846, 1078, 1177 |
| BseYI | CCCAGC | 1 cut(s) | 211 |
| Bsh1236I | CGCG | 4 cut(s) | 312, 435, 446, 1026 |
| Bsh1285I | CGRYCG | 1 cut(s) | 265 |
| BshFI | GGCC | 7 cut(s) | 50, 206, 210, 264, 464, 540, 1097 |
| BsiEI | CGRYCG | 1 cut(s) | 265 |
| BsiHKAI | GWGCWC | 1 cut(s) | 473 |
| BsiSI | CCGG | 5 cut(s) | 29, 117, 207, 650, 662 |
| BslFI | GGGAC | 4 cut(s) | 110, 305, 410, 563 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 237, 409, 547, 1132, 1133 |
| BsmAI | GTCTC | 1 cut(s) | 506 |
| BsmBI | CGTCTC | 1 cut(s) | 506 |
| BsmFI | GGGAC | 4 cut(s) | 110, 305, 410, 563 |
| BsmI | GAATGC | 2 cut(s) | 784, 823 |
| BsnI | GGCC | 7 cut(s) | 50, 206, 210, 264, 464, 540, 1097 |
| Bsp1286I | GDGCHC | 2 cut(s) | 473, 650 |
| Bsp143I | GATC | 5 cut(s) | 54, 66, 919, 1143, 1275 |
| Bsp68I | TCGCGA | 1 cut(s) | 1026 |
| BspANI | GGCC | 7 cut(s) | 50, 206, 210, 264, 464, 540, 1097 |
| BspCNI | CTCAG | 1 cut(s) | 471 |
| BspFNI | CGCG | 4 cut(s) | 312, 435, 446, 1026 |
| BspHI | TCATGA | 1 cut(s) | 393 |
| BspLI | GGNNCC | 2 cut(s) | 647, 1176 |
| BspPI | GGATC | 4 cut(s) | 61, 62, 927, 1283 |
| BsrBI | CCGCTC | 2 cut(s) | 303, 810 |
| BsrDI | GCAATG | 1 cut(s) | 879 |
| BsrFI | RCCGGY | 1 cut(s) | 206 |
| BsrI | ACTGG | 1 cut(s) | 1389 |
| BssAI | RCCGGY | 1 cut(s) | 206 |
| BssECI | CCNNGG | 1 cut(s) | 259 |
| BssMI | GATC | 5 cut(s) | 54, 66, 919, 1143, 1275 |
| BssNI | GRCGYC | 4 cut(s) | 294, 387, 423, 1379 |
| BssSI | CACGAG | 1 cut(s) | 689 |
| Bst2BI | CACGAG | 1 cut(s) | 689 |
| Bst2UI | CCWGG | 4 cut(s) | 52, 238, 404, 759 |
| Bst4CI | ACNGT | 2 cut(s) | 613, 1169 |
| Bst6I | CTCTTC | 4 cut(s) | 77, 281, 1238, 1304 |
| BstACI | GRCGYC | 4 cut(s) | 294, 387, 423, 1379 |
| BstC8I | GCNNGC | 3 cut(s) | 208, 376, 755 |
| BstDEI | CTNAG | 2 cut(s) | 458, 1341 |
| BstF5I | GGATG | 3 cut(s) | 141, 297, 1126 |
| BstFNI | CGCG | 4 cut(s) | 312, 435, 446, 1026 |
| BstH2I | RGCGCY | 1 cut(s) | 689 |
| BstHHI | GCGC | 3 cut(s) | 312, 655, 688 |
| BstKTI | GATC | 5 cut(s) | 57, 69, 922, 1146, 1278 |
| BstMAI | GTCTC | 1 cut(s) | 506 |
| BstMBI | GATC | 5 cut(s) | 54, 66, 919, 1143, 1275 |
| BstMCI | CGRYCG | 1 cut(s) | 265 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 212, 270, 309, 362, 371, 671, 1023, 1196 |
| BstNI | CCWGG | 4 cut(s) | 52, 238, 404, 759 |
| BstSCI | CCNGG | 5 cut(s) | 50, 236, 402, 648, 757 |
| BstSLI | GKGCMC | 1 cut(s) | 473 |
| BstUI | CGCG | 4 cut(s) | 312, 435, 446, 1026 |
| BstV1I | GCAGC | 4 cut(s) | 737, 846, 1078, 1177 |
| BstV2I | GAAGAC | 2 cut(s) | 614, 1382 |
| BstX2I | RGATCY | 2 cut(s) | 66, 1143 |
| BstYI | RGATCY | 2 cut(s) | 66, 1143 |
| BstZI | CGGCCG | 1 cut(s) | 262 |
| Bsu36I | CCTNAGG | 1 cut(s) | 458 |
| BsuRI | GGCC | 7 cut(s) | 50, 206, 210, 264, 464, 540, 1097 |
| BtsCI | GGATG | 3 cut(s) | 141, 297, 1126 |
| BtsIMutI | CAGTG | 1 cut(s) | 1382 |
| BtuMI | TCGCGA | 1 cut(s) | 1026 |
| Cac8I | GCNNGC | 3 cut(s) | 208, 376, 755 |
| CciI | TCATGA | 1 cut(s) | 393 |
| CfoI | GCGC | 3 cut(s) | 312, 655, 688 |
| Cfr10I | RCCGGY | 1 cut(s) | 206 |
| Cfr13I | GGNCC | 4 cut(s) | 204, 209, 462, 539 |
| CseI | GACGC | 4 cut(s) | 302, 395, 412, 424 |
| Csp6I | GTAC | 1 cut(s) | 418 |
| CviAII | CATG | 6 cut(s) | 286, 307, 394, 409, 466, 1105 |
| CviQI | GTAC | 1 cut(s) | 418 |
| DdeI | CTNAG | 2 cut(s) | 458, 1341 |
| DpnI | GATC | 5 cut(s) | 56, 68, 921, 1145, 1277 |
| DpnII | GATC | 5 cut(s) | 54, 66, 919, 1143, 1275 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 389 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 389 |
| EaeI | YGGCCR | 3 cut(s) | 48, 262, 1095 |
| EagI | CGGCCG | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 4 cut(s) | 77, 281, 1238, 1304 |
| EarI | CTCTTC | 4 cut(s) | 77, 281, 1238, 1304 |
| EciI | GGCGGA | 4 cut(s) | 20, 172, 337, 358 |
| EclXI | CGGCCG | 1 cut(s) | 262 |
| Eco24I | GRGCYC | 1 cut(s) | 650 |
| Eco52I | CGGCCG | 1 cut(s) | 262 |
| Eco81I | CCTNAGG | 1 cut(s) | 458 |
| EcoRII | CCWGG | 4 cut(s) | 50, 236, 402, 757 |
| EcoT38I | GRGCYC | 1 cut(s) | 650 |
| Esp3I | CGTCTC | 1 cut(s) | 506 |
| FaeI | CATG | 6 cut(s) | 289, 310, 397, 412, 469, 1108 |
| FaqI | GGGAC | 4 cut(s) | 110, 305, 410, 563 |
| FatI | CATG | 6 cut(s) | 285, 306, 393, 408, 465, 1104 |
| FauI | CCCGC | 4 cut(s) | 109, 238, 435, 1024 |
| FblI | GTMKAC | 2 cut(s) | 35, 252 |
| FokI | GGATG | 3 cut(s) | 128, 284, 1133 |
| FriOI | GRGCYC | 1 cut(s) | 650 |
| FseI | GGCCGGCC | 1 cut(s) | 210 |
| GlaI | GCGC | 3 cut(s) | 311, 654, 687 |
| GsaI | CCCAGC | 1 cut(s) | 215 |
| GsuI | CTGGAG | 1 cut(s) | 530 |
| HaeII | RGCGCY | 1 cut(s) | 689 |
| HaeIII | GGCC | 7 cut(s) | 50, 206, 210, 264, 464, 540, 1097 |
| HapII | CCGG | 5 cut(s) | 29, 117, 207, 650, 662 |
| HgaI | GACGC | 4 cut(s) | 302, 395, 412, 424 |
| HhaI | GCGC | 3 cut(s) | 312, 655, 688 |
| Hin1I | GRCGYC | 4 cut(s) | 294, 387, 423, 1379 |
| Hin1II | CATG | 6 cut(s) | 289, 310, 397, 412, 469, 1108 |
| Hin6I | GCGC | 3 cut(s) | 310, 653, 686 |
| HinP1I | GCGC | 3 cut(s) | 310, 653, 686 |
| HincII | GTYRAC | 1 cut(s) | 36 |
| HindII | GTYRAC | 1 cut(s) | 36 |
| HinfI | GANTC | 8 cut(s) | 32, 120, 281, 551, 636, 768, 971, 1289 |
| HpaII | CCGG | 5 cut(s) | 29, 117, 207, 650, 662 |
| HphI | GGTGA | 6 cut(s) | 10, 80, 148, 643, 1066, 1093 |
| Hpy166II | GTNNAC | 4 cut(s) | 36, 253, 471, 1318 |
| Hpy188I | TCNGA | 1 cut(s) | 1237 |
| Hpy188III | TCNNGA | 9 cut(s) | 134, 394, 509, 559, 679, 691, 1025, 1048, 1147 |
| Hpy8I | GTNNAC | 4 cut(s) | 36, 253, 471, 1318 |
| Hpy99I | CGWCG | 3 cut(s) | 386, 389, 440 |
| HpyAV | CCTTC | 7 cut(s) | 187, 361, 514, 566, 577, 581, 1362 |
| HpyCH4III | ACNGT | 2 cut(s) | 613, 1169 |
| HpyCH4IV | ACGT | 3 cut(s) | 398, 657, 1379 |
| HpyCH4V | TGCA | 2 cut(s) | 471, 926 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 212, 270, 309, 362, 371, 671, 1023, 1196 |
| HpyF3I | CTNAG | 2 cut(s) | 458, 1341 |
| HpySE526I | ACGT | 3 cut(s) | 398, 657, 1379 |
| Hsp92I | GRCGYC | 4 cut(s) | 294, 387, 423, 1379 |
| Hsp92II | CATG | 6 cut(s) | 289, 310, 397, 412, 469, 1108 |
| HspAI | GCGC | 3 cut(s) | 310, 653, 686 |
| KroI | GCCGGC | 1 cut(s) | 206 |
| KroNI | GCCGGC | 1 cut(s) | 208 |
| Kzo9I | GATC | 5 cut(s) | 54, 66, 919, 1143, 1275 |
| LmnI | GCTCC | 5 cut(s) | 308, 459, 525, 645, 1174 |
| Lsp1109I | GCAGC | 4 cut(s) | 737, 846, 1078, 1177 |
| LweI | GCATC | 1 cut(s) | 661 |
| MaeII | ACGT | 3 cut(s) | 398, 657, 1379 |
| MaeIII | GTNAC | 2 cut(s) | 976, 1380 |
| MalI | GATC | 5 cut(s) | 56, 68, 921, 1145, 1277 |
| MbiI | CCGCTC | 2 cut(s) | 303, 810 |
| MboI | GATC | 5 cut(s) | 54, 66, 919, 1143, 1275 |
| MboII | GAAGA | 8 cut(s) | 64, 187, 268, 619, 1069, 1255, 1321, 1387 |
| MflI | RGATCY | 2 cut(s) | 66, 1143 |
| MhlI | GDGCHC | 2 cut(s) | 473, 650 |
| MluCI | AATT | 2 cut(s) | 865, 1084 |
| MluI | ACGCGT | 1 cut(s) | 433 |
| MlyI | GAGTC | 3 cut(s) | 41, 545, 645 |
| MmeI | TCCRAC | 1 cut(s) | 480 |
| MroNI | GCCGGC | 1 cut(s) | 206 |
| MseI | TTAA | 4 cut(s) | 720, 798, 1008, 1083 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1103 |
| MspI | CCGG | 5 cut(s) | 29, 117, 207, 650, 662 |
| MspR9I | CCNGG | 5 cut(s) | 52, 238, 404, 650, 759 |
| Mva1269I | GAATGC | 2 cut(s) | 784, 823 |
| MvaI | CCWGG | 4 cut(s) | 52, 238, 404, 759 |
| MvnI | CGCG | 4 cut(s) | 312, 435, 446, 1026 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 212, 270, 309, 362, 371, 671, 1023, 1196 |
| NaeI | GCCGGC | 1 cut(s) | 208 |
| NciI | CCSGG | 1 cut(s) | 650 |
| NdeII | GATC | 5 cut(s) | 54, 66, 919, 1143, 1275 |
| NgoMIV | GCCGGC | 1 cut(s) | 206 |
| NlaIII | CATG | 6 cut(s) | 289, 310, 397, 412, 469, 1108 |
| NlaIV | GGNNCC | 2 cut(s) | 647, 1176 |
| NmeAIII | GCCGAG | 2 cut(s) | 240, 575 |
| NmuCI | GTSAC | 1 cut(s) | 1380 |
| NruI | TCGCGA | 1 cut(s) | 1026 |
| PagI | TCATGA | 1 cut(s) | 393 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 32, 387, 602, 696, 1298 |
| PctI | GAATGC | 2 cut(s) | 784, 823 |
| PdiI | GCCGGC | 1 cut(s) | 208 |
| PfeI | GAWTC | 5 cut(s) | 120, 281, 768, 971, 1289 |
| PflFI | GACNNNGTC | 1 cut(s) | 389 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 409 |
| PleI | GAGTC | 3 cut(s) | 40, 545, 644 |
| PpsI | GAGTC | 3 cut(s) | 40, 545, 644 |
| PsiI | TTATAA | 1 cut(s) | 984 |
| Psp6I | CCWGG | 4 cut(s) | 50, 236, 402, 757 |
| PspFI | CCCAGC | 1 cut(s) | 211 |
| PspGI | CCWGG | 4 cut(s) | 50, 236, 402, 757 |
| PspN4I | GGNNCC | 2 cut(s) | 647, 1176 |
| PspPI | GGNCC | 4 cut(s) | 204, 209, 462, 539 |
| PsuI | RGATCY | 2 cut(s) | 66, 1143 |
| PsyI | GACNNNGTC | 1 cut(s) | 389 |
| RigI | GGCCGGCC | 1 cut(s) | 210 |
| RruI | TCGCGA | 1 cut(s) | 1026 |
| RsaI | GTAC | 1 cut(s) | 419 |
| RsaNI | GTAC | 1 cut(s) | 418 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1103 |
| SalI | GTCGAC | 1 cut(s) | 34 |
| SaqAI | TTAA | 4 cut(s) | 720, 798, 1008, 1083 |
| Sau3AI | GATC | 5 cut(s) | 54, 66, 919, 1143, 1275 |
| Sau96I | GGNCC | 4 cut(s) | 204, 209, 462, 539 |
| SchI | GAGTC | 3 cut(s) | 41, 545, 645 |
| ScrFI | CCNGG | 5 cut(s) | 52, 238, 404, 650, 759 |
| SduI | GDGCHC | 2 cut(s) | 473, 650 |
| SfaNI | GCATC | 1 cut(s) | 661 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1103 |
| Sse9I | AATT | 2 cut(s) | 865, 1084 |
| StyD4I | CCNGG | 5 cut(s) | 50, 236, 402, 648, 757 |
| TaaI | ACNGT | 2 cut(s) | 613, 1169 |
| TaiI | ACGT | 3 cut(s) | 401, 660, 1382 |
| TasI | AATT | 2 cut(s) | 865, 1084 |
| TauI | GCSGC | 9 cut(s) | 236, 267, 374, 443, 446, 486, 813, 1097, 1180 |
| TfiI | GAWTC | 5 cut(s) | 120, 281, 768, 971, 1289 |
| Tru1I | TTAA | 4 cut(s) | 720, 798, 1008, 1083 |
| Tru9I | TTAA | 4 cut(s) | 720, 798, 1008, 1083 |
| TscAI | CASTG | 1 cut(s) | 1389 |
| TseFI | GTSAC | 1 cut(s) | 1380 |
| TseI | GCWGC | 4 cut(s) | 750, 859, 1091, 1190 |
| Tsp45I | GTSAC | 1 cut(s) | 1380 |
| TspDTI | ATGAA | 3 cut(s) | 533, 752, 1302 |
| TspGWI | ACGGA | 1 cut(s) | 65 |
| TspRI | CASTG | 1 cut(s) | 1389 |
| Tth111I | GACNNNGTC | 1 cut(s) | 389 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 409 |
| VneI | GTGCAC | 1 cut(s) | 469 |
| XmiI | GTMKAC | 2 cut(s) | 35, 252 |
| ZraI | GACGTC | 1 cut(s) | 1380 |