FvH4_5g24890

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
16291942 .. 16294569
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24890.t1

Sequence Viewer

Length: 1395 bp
ATGGCGGAGAATGACCTCACCGCCTCGCCGGAGTCGACCACACCAACGGCCAGGATCATCTGCGAGATCCTCTTCCGTCAATCCCCTCACCAAATCTGCCCCGCCCTCGCCTCCACCGGAATCGTCCCTACTCTCGACCTCATCCTCGAAGTCCTCACCCTCTCCTACGACTACCCCTTCTCCGCCATCAAGTTCTTCCAATGGGCCGGCCCAGCCCAAAACCACTCCCCCGCCGCCTGGAACATCATCGTAGACCTCCTCGGCCGCAACCGCCTCTTCGATTCCATGTGGGACGCCATCCGCTCCATGCGCGACCAATCCACTCTCTCCCTCTCCACCTTTTCCTCCGCCTTCGCCAACTACGCCTCCGCCGCACGCTTCGACGACGCCGTCATGACGTTCCAGGTCATGGACAAGTACGGCGTCCCGCCACGCGTCGCCGCCGCGAACTCGCTCCTCAGGGCCATGTGCACCCAAAACGGCGGCGTTTCGAGGGCGTTGGAGTTTCTGGAGACGATGAAGGGGAGCGAGGAGTTCGGCCCTGATGGGGACTCGTTCGGGATTTTGCTGGAAGGTTTGGAGAAGGAAGGAAACTCGGCAAGGGCGAAGACGGTGTTTGGGGAGATGGTGGTGAGAGTCGGGTGGAGCCCGGCGCACGTTCCGGCTTACGATGCTTTCTTGACGGCGCTCGTGAGGGGCGAGGAAATCGAGGAGGCTGTTAAGTTCTTGGGAGTGATGAACAAGAATGGCTGCTTGCCAGGTTTGAGATTCTTGTCGAATGCTGTTGATATTCTTGTTAAGAAAAAGAGCGGCAAGAATGCTATATTGGTTTGGGATATTATGGTTGGTAATGGGTTGCTGCCTAATTTGGCAATGTATAATGCTATGATTGGGTTGATGTGTGATTGTAATGAGGTGGATCGTGCATTTCAGCTACTTGATGAGATGGTGTTCAATGGTGCTTTCCCTGATTCTGTTACTTATAATGCTATATTCAAGTGCTTGATTAAGAACAGCAGGGTTCGCGAGGCGGGGAAGTTCTTTGTCGAGATGGTGAAGAATGAGTGTCTGCCGACACATTTTAATTTTGCTGCGGCCATCACCATGTTTTTCGATGGGGATGACCCTGAAATGGGGGTTGAGATCTGGAACTTTATGGTTGAGAACTGTGTGGAGCCGCTTGATGTTGCTGCCAATGCCTTGCTTTTGGGTCTTTGTAAGTTAGATAGGTTGTCCGAGTTGAAGAGGTGTGCTGATGATATGCTCGATAGGAGGATCAGCGTTTATGAATCGACTATGGCGAGGTTGAAGAGTGTTTACTATAAAGATGGCAGAGGTGCTAAGGATAAATATGATGGCTTGGCAAGAAGGTGGAAGACGTCACTGGCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

51.46

Weight (kDa)

5.24

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 284 - 317 1.2e-08 PPR repeat
PPR_2 PF13041 288 - 337 1.9e-13 PPR repeat family
PPR_2 PF13041 323 - 362 7.3e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 984
AasI GACNNNNNNGTC 1 cut(s) 389
AatII GACGTC 1 cut(s) 1382
AccB7I CCANNNNNTGG 1 cut(s) 409
AccBSI CCGCTC 2 cut(s) 303, 810
AccI GTMKAC 2 cut(s) 35, 252
AccII CGCG 4 cut(s) 312, 435, 446, 1026
AclWI GGATC 4 cut(s) 61, 62, 927, 1283
AcoI YGGCCR 3 cut(s) 48, 262, 1095
AcyI GRCGYC 4 cut(s) 294, 387, 423, 1379
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 5 cut(s) 237, 409, 547, 1132, 1133
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 4 cut(s) 955, 997, 1243, 1309
AjnI CCWGG 4 cut(s) 50, 236, 402, 757
AjuI GAANNNNNNNTTGG 2 cut(s) 809, 841
AluBI AGCT 1 cut(s) 934
AluI AGCT 1 cut(s) 934
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 1 cut(s) 506
Alw44I GTGCAC 1 cut(s) 469
AlwI GGATC 4 cut(s) 61, 62, 927, 1283
AoxI GGCC 7 cut(s) 48, 204, 208, 262, 462, 538, 1095
ApaLI GTGCAC 1 cut(s) 469
ApeKI GCWGC 4 cut(s) 750, 859, 1091, 1190
AspLEI GCGC 3 cut(s) 312, 655, 688
AspS9I GGNCC 4 cut(s) 204, 209, 462, 539
AsuC2I CCSGG 1 cut(s) 650
AsuHPI GGTGA 6 cut(s) 10, 80, 148, 643, 1066, 1093
AxyI CCTNAGG 1 cut(s) 458
BaeGI GKGCMC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 650
BarI GAAGNNNNNNTAC 2 cut(s) 1301, 1333
BauI CACGAG 1 cut(s) 689
BbsI GAAGAC 2 cut(s) 614, 1382
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 4 cut(s) 737, 846, 1078, 1177
BceAI ACGGC 5 cut(s) 63, 374, 436, 496, 699
BciT130I CCWGG 4 cut(s) 52, 238, 404, 759
BcnI CCSGG 1 cut(s) 650
BcoDI GTCTC 1 cut(s) 506
BfoI RGCGCY 1 cut(s) 689
BglII AGATCT 1 cut(s) 1143
Bme1390I CCNGG 5 cut(s) 52, 238, 404, 650, 759
BmgT120I GGNCC 4 cut(s) 204, 209, 462, 539
BmiI GGNNCC 2 cut(s) 647, 1176
BmrFI CCNGG 5 cut(s) 52, 238, 404, 650, 759
BmsI GCATC 1 cut(s) 661
BpiI GAAGAC 2 cut(s) 614, 1382
BpmI CTGGAG 1 cut(s) 530
Bpu10I CCTNAGC 1 cut(s) 1341
BpuMI CCSGG 1 cut(s) 650
BsaHI GRCGYC 4 cut(s) 294, 387, 423, 1379
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 350, 380
Bsc4I CCNNNNNNNGG 5 cut(s) 237, 409, 547, 1132, 1133
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 1389
Bse21I CCTNAGG 1 cut(s) 458
Bse3DI GCAATG 1 cut(s) 879
BseBI CCWGG 4 cut(s) 52, 238, 404, 759
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 3 cut(s) 141, 297, 1126
BseLI CCNNNNNNNGG 5 cut(s) 237, 409, 547, 1132, 1133
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 1 cut(s) 472
BseNI ACTGG 1 cut(s) 1389
BseRI GAGGAG 4 cut(s) 248, 446, 545, 725
BseSI GKGCMC 1 cut(s) 473
BseX3I CGGCCG 1 cut(s) 262
BseXI GCAGC 4 cut(s) 737, 846, 1078, 1177
BseYI CCCAGC 1 cut(s) 211
Bsh1236I CGCG 4 cut(s) 312, 435, 446, 1026
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 7 cut(s) 50, 206, 210, 264, 464, 540, 1097
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 5 cut(s) 29, 117, 207, 650, 662
BslFI GGGAC 4 cut(s) 110, 305, 410, 563
BslI CCNNNNNNNGG 5 cut(s) 237, 409, 547, 1132, 1133
BsmAI GTCTC 1 cut(s) 506
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 4 cut(s) 110, 305, 410, 563
BsmI GAATGC 2 cut(s) 784, 823
BsnI GGCC 7 cut(s) 50, 206, 210, 264, 464, 540, 1097
Bsp1286I GDGCHC 2 cut(s) 473, 650
Bsp143I GATC 5 cut(s) 54, 66, 919, 1143, 1275
Bsp68I TCGCGA 1 cut(s) 1026
BspANI GGCC 7 cut(s) 50, 206, 210, 264, 464, 540, 1097
BspCNI CTCAG 1 cut(s) 471
BspFNI CGCG 4 cut(s) 312, 435, 446, 1026
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 2 cut(s) 647, 1176
BspPI GGATC 4 cut(s) 61, 62, 927, 1283
BsrBI CCGCTC 2 cut(s) 303, 810
BsrDI GCAATG 1 cut(s) 879
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 1389
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 5 cut(s) 54, 66, 919, 1143, 1275
BssNI GRCGYC 4 cut(s) 294, 387, 423, 1379
BssSI CACGAG 1 cut(s) 689
Bst2BI CACGAG 1 cut(s) 689
Bst2UI CCWGG 4 cut(s) 52, 238, 404, 759
Bst4CI ACNGT 2 cut(s) 613, 1169
Bst6I CTCTTC 4 cut(s) 77, 281, 1238, 1304
BstACI GRCGYC 4 cut(s) 294, 387, 423, 1379
BstC8I GCNNGC 3 cut(s) 208, 376, 755
BstDEI CTNAG 2 cut(s) 458, 1341
BstF5I GGATG 3 cut(s) 141, 297, 1126
BstFNI CGCG 4 cut(s) 312, 435, 446, 1026
BstH2I RGCGCY 1 cut(s) 689
BstHHI GCGC 3 cut(s) 312, 655, 688
BstKTI GATC 5 cut(s) 57, 69, 922, 1146, 1278
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 5 cut(s) 54, 66, 919, 1143, 1275
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 8 cut(s) 212, 270, 309, 362, 371, 671, 1023, 1196
BstNI CCWGG 4 cut(s) 52, 238, 404, 759
BstSCI CCNGG 5 cut(s) 50, 236, 402, 648, 757
BstSLI GKGCMC 1 cut(s) 473
BstUI CGCG 4 cut(s) 312, 435, 446, 1026
BstV1I GCAGC 4 cut(s) 737, 846, 1078, 1177
BstV2I GAAGAC 2 cut(s) 614, 1382
BstX2I RGATCY 2 cut(s) 66, 1143
BstYI RGATCY 2 cut(s) 66, 1143
BstZI CGGCCG 1 cut(s) 262
Bsu36I CCTNAGG 1 cut(s) 458
BsuRI GGCC 7 cut(s) 50, 206, 210, 264, 464, 540, 1097
BtsCI GGATG 3 cut(s) 141, 297, 1126
BtsIMutI CAGTG 1 cut(s) 1382
BtuMI TCGCGA 1 cut(s) 1026
Cac8I GCNNGC 3 cut(s) 208, 376, 755
CciI TCATGA 1 cut(s) 393
CfoI GCGC 3 cut(s) 312, 655, 688
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 4 cut(s) 204, 209, 462, 539
CseI GACGC 4 cut(s) 302, 395, 412, 424
Csp6I GTAC 1 cut(s) 418
CviAII CATG 6 cut(s) 286, 307, 394, 409, 466, 1105
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 458, 1341
DpnI GATC 5 cut(s) 56, 68, 921, 1145, 1277
DpnII GATC 5 cut(s) 54, 66, 919, 1143, 1275
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 3 cut(s) 48, 262, 1095
EagI CGGCCG 1 cut(s) 262
Eam1104I CTCTTC 4 cut(s) 77, 281, 1238, 1304
EarI CTCTTC 4 cut(s) 77, 281, 1238, 1304
EciI GGCGGA 4 cut(s) 20, 172, 337, 358
EclXI CGGCCG 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 650
Eco52I CGGCCG 1 cut(s) 262
Eco81I CCTNAGG 1 cut(s) 458
EcoRII CCWGG 4 cut(s) 50, 236, 402, 757
EcoT38I GRGCYC 1 cut(s) 650
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 6 cut(s) 289, 310, 397, 412, 469, 1108
FaqI GGGAC 4 cut(s) 110, 305, 410, 563
FatI CATG 6 cut(s) 285, 306, 393, 408, 465, 1104
FauI CCCGC 4 cut(s) 109, 238, 435, 1024
FblI GTMKAC 2 cut(s) 35, 252
FokI GGATG 3 cut(s) 128, 284, 1133
FriOI GRGCYC 1 cut(s) 650
FseI GGCCGGCC 1 cut(s) 210
GlaI GCGC 3 cut(s) 311, 654, 687
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 530
HaeII RGCGCY 1 cut(s) 689
HaeIII GGCC 7 cut(s) 50, 206, 210, 264, 464, 540, 1097
HapII CCGG 5 cut(s) 29, 117, 207, 650, 662
HgaI GACGC 4 cut(s) 302, 395, 412, 424
HhaI GCGC 3 cut(s) 312, 655, 688
Hin1I GRCGYC 4 cut(s) 294, 387, 423, 1379
Hin1II CATG 6 cut(s) 289, 310, 397, 412, 469, 1108
Hin6I GCGC 3 cut(s) 310, 653, 686
HinP1I GCGC 3 cut(s) 310, 653, 686
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 8 cut(s) 32, 120, 281, 551, 636, 768, 971, 1289
HpaII CCGG 5 cut(s) 29, 117, 207, 650, 662
HphI GGTGA 6 cut(s) 10, 80, 148, 643, 1066, 1093
Hpy166II GTNNAC 4 cut(s) 36, 253, 471, 1318
Hpy188I TCNGA 1 cut(s) 1237
Hpy188III TCNNGA 9 cut(s) 134, 394, 509, 559, 679, 691, 1025, 1048, 1147
Hpy8I GTNNAC 4 cut(s) 36, 253, 471, 1318
Hpy99I CGWCG 3 cut(s) 386, 389, 440
HpyAV CCTTC 7 cut(s) 187, 361, 514, 566, 577, 581, 1362
HpyCH4III ACNGT 2 cut(s) 613, 1169
HpyCH4IV ACGT 3 cut(s) 398, 657, 1379
HpyCH4V TGCA 2 cut(s) 471, 926
HpyF10VI GCNNNNNNNGC 8 cut(s) 212, 270, 309, 362, 371, 671, 1023, 1196
HpyF3I CTNAG 2 cut(s) 458, 1341
HpySE526I ACGT 3 cut(s) 398, 657, 1379
Hsp92I GRCGYC 4 cut(s) 294, 387, 423, 1379
Hsp92II CATG 6 cut(s) 289, 310, 397, 412, 469, 1108
HspAI GCGC 3 cut(s) 310, 653, 686
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Kzo9I GATC 5 cut(s) 54, 66, 919, 1143, 1275
LmnI GCTCC 5 cut(s) 308, 459, 525, 645, 1174
Lsp1109I GCAGC 4 cut(s) 737, 846, 1078, 1177
LweI GCATC 1 cut(s) 661
MaeII ACGT 3 cut(s) 398, 657, 1379
MaeIII GTNAC 2 cut(s) 976, 1380
MalI GATC 5 cut(s) 56, 68, 921, 1145, 1277
MbiI CCGCTC 2 cut(s) 303, 810
MboI GATC 5 cut(s) 54, 66, 919, 1143, 1275
MboII GAAGA 8 cut(s) 64, 187, 268, 619, 1069, 1255, 1321, 1387
MflI RGATCY 2 cut(s) 66, 1143
MhlI GDGCHC 2 cut(s) 473, 650
MluCI AATT 2 cut(s) 865, 1084
MluI ACGCGT 1 cut(s) 433
MlyI GAGTC 3 cut(s) 41, 545, 645
MmeI TCCRAC 1 cut(s) 480
MroNI GCCGGC 1 cut(s) 206
MseI TTAA 4 cut(s) 720, 798, 1008, 1083
MslI CAYNNNNRTG 1 cut(s) 1103
MspI CCGG 5 cut(s) 29, 117, 207, 650, 662
MspR9I CCNGG 5 cut(s) 52, 238, 404, 650, 759
Mva1269I GAATGC 2 cut(s) 784, 823
MvaI CCWGG 4 cut(s) 52, 238, 404, 759
MvnI CGCG 4 cut(s) 312, 435, 446, 1026
MwoI GCNNNNNNNGC 8 cut(s) 212, 270, 309, 362, 371, 671, 1023, 1196
NaeI GCCGGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 650
NdeII GATC 5 cut(s) 54, 66, 919, 1143, 1275
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 6 cut(s) 289, 310, 397, 412, 469, 1108
NlaIV GGNNCC 2 cut(s) 647, 1176
NmeAIII GCCGAG 2 cut(s) 240, 575
NmuCI GTSAC 1 cut(s) 1380
NruI TCGCGA 1 cut(s) 1026
PagI TCATGA 1 cut(s) 393
PcsI WCGNNNNNNNCGW 5 cut(s) 32, 387, 602, 696, 1298
PctI GAATGC 2 cut(s) 784, 823
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 5 cut(s) 120, 281, 768, 971, 1289
PflFI GACNNNGTC 1 cut(s) 389
PflMI CCANNNNNTGG 1 cut(s) 409
PleI GAGTC 3 cut(s) 40, 545, 644
PpsI GAGTC 3 cut(s) 40, 545, 644
PsiI TTATAA 1 cut(s) 984
Psp6I CCWGG 4 cut(s) 50, 236, 402, 757
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 4 cut(s) 50, 236, 402, 757
PspN4I GGNNCC 2 cut(s) 647, 1176
PspPI GGNCC 4 cut(s) 204, 209, 462, 539
PsuI RGATCY 2 cut(s) 66, 1143
PsyI GACNNNGTC 1 cut(s) 389
RigI GGCCGGCC 1 cut(s) 210
RruI TCGCGA 1 cut(s) 1026
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 1103
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 4 cut(s) 720, 798, 1008, 1083
Sau3AI GATC 5 cut(s) 54, 66, 919, 1143, 1275
Sau96I GGNCC 4 cut(s) 204, 209, 462, 539
SchI GAGTC 3 cut(s) 41, 545, 645
ScrFI CCNGG 5 cut(s) 52, 238, 404, 650, 759
SduI GDGCHC 2 cut(s) 473, 650
SfaNI GCATC 1 cut(s) 661
SmiMI CAYNNNNRTG 1 cut(s) 1103
Sse9I AATT 2 cut(s) 865, 1084
StyD4I CCNGG 5 cut(s) 50, 236, 402, 648, 757
TaaI ACNGT 2 cut(s) 613, 1169
TaiI ACGT 3 cut(s) 401, 660, 1382
TasI AATT 2 cut(s) 865, 1084
TauI GCSGC 9 cut(s) 236, 267, 374, 443, 446, 486, 813, 1097, 1180
TfiI GAWTC 5 cut(s) 120, 281, 768, 971, 1289
Tru1I TTAA 4 cut(s) 720, 798, 1008, 1083
Tru9I TTAA 4 cut(s) 720, 798, 1008, 1083
TscAI CASTG 1 cut(s) 1389
TseFI GTSAC 1 cut(s) 1380
TseI GCWGC 4 cut(s) 750, 859, 1091, 1190
Tsp45I GTSAC 1 cut(s) 1380
TspDTI ATGAA 3 cut(s) 533, 752, 1302
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 1389
Tth111I GACNNNGTC 1 cut(s) 389
Van91I CCANNNNNTGG 1 cut(s) 409
VneI GTGCAC 1 cut(s) 469
XmiI GTMKAC 2 cut(s) 35, 252
ZraI GACGTC 1 cut(s) 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.