Rorug07G0150700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011565
Physical Location & Seq
Reverse (-)
11967458 .. 11968414
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0150700.1

Sequence Viewer

Length: 957 bp
ATGGCTCCATATTGTTCCGGCTGTTTCGGTTCTTGGTTGATAATTGCAGAACACAGCCGTCAGTCAAAGACGGTCAAGAGCTACTTCTTCAACCCAGTATCGGGTGCTCGCATTGCTCTGCCACCCCATACGAACCGTTCTTTCTTTGTCAGAGACGACGAAACTGGTTGGAATGAGAAAGTTGTTGTCAAGACAGTGGCCTCTTCCGATCCAACAGATCCCAACTGCATTGTAGCGGCACTTACATTACATGCACATAAGTTGGCCTTTTGCAGGCCAAATGATGCATCATGGACTTTGCAATATCGACCCGATAGTCCCGAAGAAGGTGGCTTTGGCTTGACTGACCTTCACTTCCATGAGGGAGAGTTGTATGCAACGGTGGGAAGAATGATCGACGCTGTGCTTATGTTTGATCCCATAGAGGTTCTTTCTCAATCTCAATGTGGAAGTGACGAGGCTGCTTTCAAGGGCAAGTTGTTATTGGTCAGCCCTCTTCAGTTTCACACGAGGTCCATGCATAATCCATCTTTTTCTTTGATCACCTCCTTCAGTGGTGAGATGGCACTAGTTCTGAAGAATGAGAGAATACTCAGAAAACGGAACTATAAAGAAGTATCATTTTTGGTGTTGAAGGGTAAGGTAGATAAAACTCTTCATATAGGTGGTTCTGCCGGTTACTGTGATTGGGAAGAGATGAATAACCTTGGAGAGCAAGCAATCTTTATAGGCGATATAGGAGCCAAAACCTTGATTGCTATGTCAAAACCAACCAACTCGATGCCGGTGATAGACAAGCTTGGTGGACTTGGAAGTGGAAACTGCATCTATTTTACCGATGAAGAGGATGACAACATTGGTGTTTATAACTCGGCTGACGGGACACTCAAATATCAGCTCACTGGAGGTCTTCAACAAGCACATAGTAAGGTCTGGTTCACACCAAAGCTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

318

Amino Acids

35.07

Weight (kDa)

6.06

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 4 - 290 4.8e-35 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 867
AasI GACNNNNNNGTC 1 cut(s) 315
AciI CCGC 1 cut(s) 236
AclWI GGATC 3 cut(s) 203, 212, 410
AcuI CTGAAG 3 cut(s) 482, 535, 596
AfiI CCNNNNNNNGG 4 cut(s) 100, 101, 273, 326
AgsI TTSAA 4 cut(s) 91, 469, 634, 914
AhlI ACTAGT 1 cut(s) 568
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 4 cut(s) 81, 799, 898, 949
AluI AGCT 4 cut(s) 81, 799, 898, 949
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 3 cut(s) 203, 212, 410
AoxI GGCC 3 cut(s) 198, 264, 275
ApeKI GCWGC 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 3 cut(s) 535, 569, 799
AvaII GGWCC 1 cut(s) 513
BauI CACGAG 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 902
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 448
BccI CCATC 2 cut(s) 535, 556
BceAI ACGGC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 499, 533
BclI TGATCA 1 cut(s) 540
BcoDI GTCTC 1 cut(s) 147
BcuI ACTAGT 1 cut(s) 568
BfaI CTAG 1 cut(s) 569
BisI GCNGC 2 cut(s) 237, 462
BlsI GCNGC 2 cut(s) 238, 463
Bme18I GGWCC 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 513
BmiI GGNNCC 2 cut(s) 6, 742
BmrI ACTGGG 1 cut(s) 89
BmsI GCATC 4 cut(s) 274, 296, 771, 834
BmuI ACTGGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 902
BpmI CTGGAG 1 cut(s) 924
BsaJI CCNNGG 1 cut(s) 706
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 101, 273, 326
Bse118I RCCGGY 2 cut(s) 674, 784
Bse1I ACTGG 3 cut(s) 95, 169, 907
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 706
BseGI GGATG 1 cut(s) 853
BseLI CCNNNNNNNGG 4 cut(s) 100, 101, 273, 326
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 607
BseNI ACTGG 3 cut(s) 95, 169, 907
BseXI GCAGC 1 cut(s) 448
BshFI GGCC 3 cut(s) 200, 266, 277
BsiHKAI GWGCWC 1 cut(s) 109
BsiSI CCGG 3 cut(s) 18, 675, 785
BslFI GGGAC 2 cut(s) 303, 895
BslI CCNNNNNNNGG 4 cut(s) 100, 101, 273, 326
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 2 cut(s) 303, 895
BsnI GGCC 3 cut(s) 200, 266, 277
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 5 cut(s) 208, 217, 393, 415, 540
BspACI CCGC 1 cut(s) 236
BspANI GGCC 3 cut(s) 200, 266, 277
BspCNI CTCAG 1 cut(s) 606
BspHI TCATGA 1 cut(s) 953
BspLI GGNNCC 2 cut(s) 6, 742
BspPI GGATC 3 cut(s) 203, 212, 410
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 674, 784
BsrI ACTGG 3 cut(s) 95, 169, 907
BssAI RCCGGY 2 cut(s) 674, 784
BssECI CCNNGG 1 cut(s) 706
BssMI GATC 5 cut(s) 208, 217, 393, 415, 540
BssSI CACGAG 1 cut(s) 508
BssT1I CCWWGG 1 cut(s) 706
Bst2BI CACGAG 1 cut(s) 508
Bst4CI ACNGT 5 cut(s) 73, 137, 196, 382, 683
Bst6I CTCTTC 5 cut(s) 208, 501, 660, 687, 837
BstC8I GCNNGC 3 cut(s) 109, 275, 717
BstDEI CTNAG 1 cut(s) 593
BstENI CCTNNNNNAGG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 853
BstKTI GATC 5 cut(s) 211, 220, 396, 418, 543
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 5 cut(s) 208, 217, 393, 415, 540
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 1 cut(s) 902
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 3 cut(s) 200, 266, 277
BtsCI GGATG 1 cut(s) 853
BtsIMutI CAGTG 3 cut(s) 201, 559, 900
Cac8I GCNNGC 3 cut(s) 109, 275, 717
CciI TCATGA 1 cut(s) 953
Cfr10I RCCGGY 2 cut(s) 674, 784
Cfr13I GGNCC 1 cut(s) 513
CseI GACGC 1 cut(s) 407
CspCI CAANNNNNGTGG 2 cut(s) 784, 819
CviAII CATG 5 cut(s) 251, 291, 359, 517, 954
DdeI CTNAG 1 cut(s) 593
DpnI GATC 5 cut(s) 210, 219, 395, 417, 542
DpnII GATC 5 cut(s) 208, 217, 393, 415, 540
DrdI GACNNNNNNGTC 1 cut(s) 315
DseDI GACNNNNNNGTC 1 cut(s) 315
Eam1104I CTCTTC 5 cut(s) 208, 501, 660, 687, 837
EarI CTCTTC 5 cut(s) 208, 501, 660, 687, 837
Eco130I CCWWGG 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 513
Eco57I CTGAAG 3 cut(s) 482, 535, 596
EcoNI CCTNNNNNAGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 706
EcoT22I ATGCAT 2 cut(s) 289, 522
ErhI CCWWGG 1 cut(s) 706
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 5 cut(s) 254, 294, 362, 520, 957
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 251, 283
FaqI GGGAC 2 cut(s) 303, 895
FatI CATG 5 cut(s) 250, 290, 358, 516, 953
FbaI TGATCA 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 237, 462
FokI GGATG 1 cut(s) 860
Fsp4HI GCNGC 2 cut(s) 237, 462
FspBI CTAG 1 cut(s) 569
GluI GCNGC 2 cut(s) 237, 462
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 3 cut(s) 200, 266, 277
HapII CCGG 3 cut(s) 18, 675, 785
HgaI GACGC 1 cut(s) 407
Hin1II CATG 5 cut(s) 254, 294, 362, 520, 957
HindIII AAGCTT 2 cut(s) 797, 947
HpaII CCGG 3 cut(s) 18, 675, 785
HphI GGTGA 3 cut(s) 535, 569, 799
Hpy166II GTNNAC 2 cut(s) 806, 939
Hpy188I TCNGA 4 cut(s) 152, 208, 576, 596
Hpy188III TCNNGA 4 cut(s) 76, 190, 320, 954
Hpy8I GTNNAC 2 cut(s) 806, 939
Hpy99I CGWCG 2 cut(s) 161, 401
HpyAV CCTTC 4 cut(s) 320, 359, 559, 628
HpyCH4III ACNGT 5 cut(s) 73, 137, 196, 382, 683
HpyCH4V TGCA 9 cut(s) 47, 228, 254, 273, 287, 301, 377, 520, 825
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 593
Hsp92II CATG 5 cut(s) 254, 294, 362, 520, 957
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 5 cut(s) 208, 217, 393, 415, 540
LmnI GCTCC 2 cut(s) 10, 740
LpnPI CCDG 8 cut(s) 31, 108, 150, 259, 688, 798, 888, 919
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 4 cut(s) 274, 296, 771, 834
MaeI CTAG 1 cut(s) 569
MaeIII GTNAC 2 cut(s) 452, 677
MalI GATC 5 cut(s) 210, 219, 395, 417, 542
MboI GATC 5 cut(s) 208, 217, 393, 415, 540
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 2 cut(s) 149, 236
MnlI CCTC 9 cut(s) 211, 355, 418, 451, 504, 504, 556, 838, 899
Mph1103I ATGCAT 2 cut(s) 289, 522
MslI CAYNNNNRTG 2 cut(s) 357, 663
MspI CCGG 3 cut(s) 18, 675, 785
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 5 cut(s) 208, 217, 393, 415, 540
NlaIII CATG 5 cut(s) 254, 294, 362, 520, 957
NlaIV GGNNCC 2 cut(s) 6, 742
NmeAIII GCCGAG 1 cut(s) 851
NmuCI GTSAC 1 cut(s) 452
NsiI ATGCAT 2 cut(s) 289, 522
NspI RCATGY 1 cut(s) 254
PagI TCATGA 1 cut(s) 953
PkrI GCNGC 2 cut(s) 238, 463
PsiI TTATAA 1 cut(s) 867
PspN4I GGNNCC 2 cut(s) 6, 742
PspPI GGNCC 1 cut(s) 513
PsuI RGATCY 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 357, 663
SatI GCNGC 2 cut(s) 237, 462
Sau3AI GATC 5 cut(s) 208, 217, 393, 415, 540
Sau96I GGNCC 1 cut(s) 513
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 4 cut(s) 274, 296, 771, 834
SinI GGWCC 1 cut(s) 513
SmiMI CAYNNNNRTG 2 cut(s) 357, 663
SpeI ACTAGT 1 cut(s) 568
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 236
SspMI CTAG 1 cut(s) 569
StyI CCWWGG 1 cut(s) 706
TaaI ACNGT 5 cut(s) 73, 137, 196, 382, 683
TaqI TCGA 3 cut(s) 307, 396, 779
TasI AATT 1 cut(s) 42
TauI GCSGC 1 cut(s) 239
TscAI CASTG 3 cut(s) 201, 559, 907
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 4 cut(s) 647, 713, 855, 942
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 3 cut(s) 201, 559, 907
VpaK11BI GGWCC 1 cut(s) 513
XagI CCTNNNNNAGG 1 cut(s) 271
XceI RCATGY 1 cut(s) 254
XspI CTAG 1 cut(s) 569
Zsp2I ATGCAT 2 cut(s) 289, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.