RLG00000002683

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
38116772 .. 38118190
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002683

Sequence Viewer

Length: 1419 bp
ATGGAGGAGTTGAGCTCTCATCCCCCGCCTTCTTCACACCTCACCACTCTGCCGGACTCGATCACACCGACGGCCAAGATCATCTGCGAGATCCTCTTCCGCCAATCGCCGCAGCAAATCTGCCCCGCCCTCGCCTCCACCGGAATCGTCCCCACCCCGGACGTCGTCATCGAAGTCCTCCGCCTCTCCTACGACTACCCCTTCTCCGCCGTCAAGTTCTTCCAATGGGCCGGCCTCGCCCACAAGCACTCCCCCAAGGCCTGGAACCTCATCGTCGACCTCCTCGGCCGCAACCGCCTCTTCGACTCCATGTGGGACGCCATCCGCTCCATGCGAGACGAAGCCACTCTCACCGTCACCACCTTCGCCTTCGCCTTCGCCAACTACTCCGCCGCCGGGAGGTTCGACGACGCCGTCATGACGTTTCAGGTCATGGACAAGTACGGAATTTCGCAACACGTCGTGGCCGCGAACTCGCTCCTCTGCGCCATGTGCGGCCAAAACGGCGGCGTTTCGAAGGCTCTAGGGTTTCTGGAGACGATGAAGGGGAGCGAGGAGTTCGGCCCCGACGGGGACTCGTTCGCCATTTTGCTGGAAGGTTTGGAGAAGGAAGGGAATTTAGCGAGAGCGAAGACGGTGTTTGGGGAGCTGGTGGTGAGGGTCGGGTGGAGCCCGGCGAACATGTCGGCTTACGATGCCTTCTTGACGACGCTGGTGAGGGGCGGGGAAACCGAGGAGGCTGTGAAATTCTTGGGAGTGATGAACAAGAATGGATGCTTGCCAGGTTTGAAATTCTTTTCCAATGCTATTGATATTCTTGTTAAGGAAAAGAGTGCCGAGAATGCTGTATTGGTTTGGGATATTATGGTTGGTAATGGCCTGCTGCCTAATTTGTCTATGTATAACGCGATGATCGGATTGATGTGCGATTGTAATGAGGTGGATCATGCGTTTCGGCTGCTTGATGAGATGGTGTTCAATGGTGCTTTCCCTGATTGTTTTACTTATAATGCTATATTCAAGTGTTTGATTAAGAATAACAAGGTTCGCGAGGCGGGGAAGTTCTTTGTGGAGATGGTGAAGAATGAGTGCCTGCCGACGCATTTCAACTTTGCTGCGGCCATCACCATGTTTTTCGATGGGGATGACCCGGAAATGGGGGTCGAAATTTGGAACTTTATGGTTGAGAACCGTGTGGAGCCTCTTGATGTTGCTGCCAATGCGTTGCTGTTGGGTCTCTGTAAGTTGGATAGGTTGTCAGAGTTGAGGAGGAGTGCTGATGATATGCTCGATAGAAGGATCAGCATTTATGAATCGACTATGGCGAGCTTGAAGAGCGCCTACTATAAGGATGGCAGAGGTGCAAAGGATAAATATGATGGCTTGGCAAGGAGGTGGAAGACCTCTTTGGCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

52.36

Weight (kDa)

5.29

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 292 - 325 2.6e-08 PPR repeat
PPR_2 PF13041 296 - 345 6.1e-13 PPR repeat family
PPR_2 PF13041 331 - 370 3.1e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1008
AasI GACNNNNNNGTC 1 cut(s) 413
AatII GACGTC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 261
AccBSI CCGCTC 1 cut(s) 327
AccI GTMKAC 1 cut(s) 276
AccII CGCG 3 cut(s) 470, 908, 1050
AclWI GGATC 3 cut(s) 85, 951, 1307
AcoI YGGCCR 5 cut(s) 72, 286, 465, 496, 1119
AcsI RAATTY 5 cut(s) 447, 616, 746, 791, 1167
AcyI GRCGYC 3 cut(s) 162, 318, 411
AdeI CACNNNGTG 1 cut(s) 463
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 7 cut(s) 157, 261, 396, 399, 571, 1156, 1157
AflIII ACRYGT 2 cut(s) 457, 681
AgsI TTSAA 5 cut(s) 790, 979, 1021, 1108, 1333
AjiI CACGTC 1 cut(s) 460
AjnI CCWGG 2 cut(s) 260, 781
AjuI GAANNNNNNNTTGG 3 cut(s) 833, 865, 1391
AluBI AGCT 3 cut(s) 15, 649, 1329
AluI AGCT 3 cut(s) 15, 649, 1329
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 3 cut(s) 330, 530, 1241
AlwI GGATC 3 cut(s) 85, 951, 1307
ApeKI GCWGC 5 cut(s) 112, 883, 958, 1115, 1214
ApoI RAATTY 5 cut(s) 447, 616, 746, 791, 1167
AspLEI GCGC 2 cut(s) 488, 1340
AspS9I GGNCC 2 cut(s) 228, 563
AsuC2I CCSGG 4 cut(s) 158, 397, 674, 1151
AsuHPI GGTGA 7 cut(s) 34, 343, 349, 667, 727, 1090, 1117
AsuII TTCGAA 1 cut(s) 515
BanII GRGCYC 2 cut(s) 17, 674
BarI GAAGNNNNNNTAC 2 cut(s) 1325, 1357
BbsI GAAGAC 2 cut(s) 638, 1406
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 5 cut(s) 124, 870, 945, 1102, 1201
BccI CCATC 7 cut(s) 329, 964, 1069, 1130, 1133, 1346, 1373
BceAI ACGGC 4 cut(s) 87, 194, 398, 520
BciT130I CCWGG 2 cut(s) 262, 783
BcnI CCSGG 4 cut(s) 158, 397, 674, 1151
BcoDI GTCTC 3 cut(s) 330, 530, 1241
BfaI CTAG 2 cut(s) 524, 1417
BfoI RGCGCY 1 cut(s) 1341
BglI GCCNNNNNGGC 1 cut(s) 504
Bme1390I CCNGG 6 cut(s) 158, 262, 397, 674, 783, 1151
BmgBI CACGTC 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 228, 563
BmiI GGNNCC 4 cut(s) 266, 565, 671, 1200
BmrFI CCNGG 6 cut(s) 158, 262, 397, 674, 783, 1151
BmsI GCATC 2 cut(s) 685, 764
BpiI GAAGAC 2 cut(s) 638, 1406
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 554
Bpu14I TTCGAA 1 cut(s) 515
BpuMI CCSGG 4 cut(s) 158, 397, 674, 1151
BsaHI GRCGYC 3 cut(s) 162, 318, 411
BsaI GGTCTC 1 cut(s) 1241
BsaJI CCNNGG 4 cut(s) 156, 255, 283, 732
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 233, 263
Bsc4I CCNNNNNNNGG 7 cut(s) 157, 261, 396, 399, 571, 1156, 1157
Bse118I RCCGGY 1 cut(s) 230
BseBI CCWGG 2 cut(s) 262, 783
BseDI CCNNGG 4 cut(s) 156, 255, 283, 732
BseGI GGATG 5 cut(s) 19, 321, 779, 1150, 1357
BseLI CCNNNNNNNGG 7 cut(s) 157, 261, 396, 399, 571, 1156, 1157
BseRI GAGGAG 7 cut(s) 20, 272, 470, 569, 749, 1282, 1285
BseX3I CGGCCG 1 cut(s) 286
BseXI GCAGC 5 cut(s) 124, 870, 945, 1102, 1201
Bsh1236I CGCG 3 cut(s) 470, 908, 1050
Bsh1285I CGRYCG 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 7 cut(s) 53, 141, 158, 231, 396, 674, 1151
BslFI GGGAC 3 cut(s) 134, 329, 587
BslI CCNNNNNNNGG 7 cut(s) 157, 261, 396, 399, 571, 1156, 1157
BsmAI GTCTC 3 cut(s) 330, 530, 1241
BsmBI CGTCTC 2 cut(s) 330, 530
BsmFI GGGAC 3 cut(s) 134, 329, 587
BsmI GAATGC 1 cut(s) 847
Bso31I GGTCTC 1 cut(s) 1241
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 17, 674
Bsp143I GATC 6 cut(s) 60, 78, 90, 912, 943, 1299
Bsp68I TCGCGA 1 cut(s) 1050
BspFNI CGCG 3 cut(s) 470, 908, 1050
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 4 cut(s) 266, 565, 671, 1200
BspPI GGATC 3 cut(s) 85, 951, 1307
BspQI GCTCTTC 1 cut(s) 1328
BspT104I TTCGAA 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 1241
BsrBI CCGCTC 1 cut(s) 327
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 4 cut(s) 156, 255, 283, 732
BssMI GATC 6 cut(s) 60, 78, 90, 912, 943, 1299
BssNI GRCGYC 3 cut(s) 162, 318, 411
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 262, 783
Bst4CI ACNGT 3 cut(s) 355, 637, 1193
Bst6I CTCTTC 3 cut(s) 101, 305, 1328
BstACI GRCGYC 3 cut(s) 162, 318, 411
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 6 cut(s) 232, 779, 881, 1094, 1327, 1414
BstF5I GGATG 5 cut(s) 19, 321, 779, 1150, 1357
BstFNI CGCG 3 cut(s) 470, 908, 1050
BstH2I RGCGCY 1 cut(s) 1341
BstHHI GCGC 2 cut(s) 488, 1340
BstKTI GATC 6 cut(s) 63, 81, 93, 915, 946, 1302
BstMAI GTCTC 3 cut(s) 330, 530, 1241
BstMBI GATC 6 cut(s) 60, 78, 90, 912, 943, 1299
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 8 cut(s) 236, 294, 492, 504, 695, 842, 1220, 1335
BstNI CCWGG 2 cut(s) 262, 783
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 6 cut(s) 156, 260, 395, 672, 781, 1149
BstUI CGCG 3 cut(s) 470, 908, 1050
BstV1I GCAGC 5 cut(s) 124, 870, 945, 1102, 1201
BstV2I GAAGAC 2 cut(s) 638, 1406
BstX2I RGATCY 1 cut(s) 90
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 1 cut(s) 90
BstZI CGGCCG 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 923
BtrI CACGTC 1 cut(s) 460
BtsCI GGATG 5 cut(s) 19, 321, 779, 1150, 1357
BtuMI TCGCGA 1 cut(s) 1050
Cac8I GCNNGC 6 cut(s) 232, 779, 881, 1094, 1327, 1414
CciI TCATGA 1 cut(s) 417
CfoI GCGC 2 cut(s) 488, 1340
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 228, 563
CseI GACGC 4 cut(s) 326, 419, 718, 1108
Csp6I GTAC 1 cut(s) 442
CviAII CATG 8 cut(s) 310, 331, 418, 433, 490, 682, 947, 1129
CviQI GTAC 1 cut(s) 442
DpnI GATC 6 cut(s) 62, 80, 92, 914, 945, 1301
DpnII GATC 6 cut(s) 60, 78, 90, 912, 943, 1299
DraIII CACNNNGTG 1 cut(s) 463
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
EaeI YGGCCR 5 cut(s) 72, 286, 465, 496, 1119
EagI CGGCCG 1 cut(s) 286
Eam1104I CTCTTC 3 cut(s) 101, 305, 1328
EarI CTCTTC 3 cut(s) 101, 305, 1328
EciI GGCGGA 4 cut(s) 89, 170, 196, 379
Ecl136II GAGCTC 1 cut(s) 15
EclXI CGGCCG 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 260
Eco24I GRGCYC 2 cut(s) 17, 674
Eco31I GGTCTC 1 cut(s) 1241
Eco52I CGGCCG 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 260, 781
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 2 cut(s) 17, 674
ErhI CCWWGG 1 cut(s) 255
Esp3I CGTCTC 2 cut(s) 330, 530
FaeI CATG 8 cut(s) 313, 334, 421, 436, 493, 685, 950, 1132
FaqI GGGAC 3 cut(s) 134, 329, 587
FatI CATG 8 cut(s) 309, 330, 417, 432, 489, 681, 946, 1128
FauI CCCGC 4 cut(s) 33, 133, 716, 1048
FblI GTMKAC 1 cut(s) 276
FokI GGATG 5 cut(s) 6, 308, 786, 1157, 1364
FriOI GRGCYC 2 cut(s) 17, 674
FseI GGCCGGCC 1 cut(s) 234
FspBI CTAG 2 cut(s) 524, 1417
GlaI GCGC 2 cut(s) 487, 1339
GsuI CTGGAG 1 cut(s) 554
HaeII RGCGCY 1 cut(s) 1341
HapII CCGG 7 cut(s) 53, 141, 158, 231, 396, 674, 1151
HgaI GACGC 4 cut(s) 326, 419, 718, 1108
HhaI GCGC 2 cut(s) 488, 1340
Hin1I GRCGYC 3 cut(s) 162, 318, 411
Hin1II CATG 8 cut(s) 313, 334, 421, 436, 493, 685, 950, 1132
Hin6I GCGC 2 cut(s) 486, 1338
HinP1I GCGC 2 cut(s) 486, 1338
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 5 cut(s) 56, 144, 305, 575, 1313
HpaII CCGG 7 cut(s) 53, 141, 158, 231, 396, 674, 1151
HphI GGTGA 7 cut(s) 34, 343, 349, 667, 727, 1090, 1117
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 917, 1261
Hpy188III TCNNGA 5 cut(s) 418, 533, 703, 1049, 1205
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 9 cut(s) 73, 167, 278, 410, 413, 464, 572, 712, 1102
HpyCH4III ACNGT 3 cut(s) 355, 637, 1193
HpyCH4IV ACGT 3 cut(s) 162, 422, 459
HpyCH4V TGCA 1 cut(s) 1364
HpyF10VI GCNNNNNNNGC 8 cut(s) 236, 294, 492, 504, 695, 842, 1220, 1335
HpySE526I ACGT 3 cut(s) 162, 422, 459
Hsp92I GRCGYC 3 cut(s) 162, 318, 411
Hsp92II CATG 8 cut(s) 313, 334, 421, 436, 493, 685, 950, 1132
HspAI GCGC 2 cut(s) 486, 1338
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
Kzo9I GATC 6 cut(s) 60, 78, 90, 912, 943, 1299
LguI GCTCTTC 1 cut(s) 1328
LmnI GCTCC 6 cut(s) 332, 483, 549, 646, 669, 1198
Lsp1109I GCAGC 5 cut(s) 124, 870, 945, 1102, 1201
LweI GCATC 2 cut(s) 685, 764
MaeI CTAG 2 cut(s) 524, 1417
MaeII ACGT 3 cut(s) 162, 422, 459
MaeIII GTNAC 1 cut(s) 355
MalI GATC 6 cut(s) 62, 80, 92, 914, 945, 1301
MbiI CCGCTC 1 cut(s) 327
MboI GATC 6 cut(s) 60, 78, 90, 912, 943, 1299
MboII GAAGA 8 cut(s) 24, 88, 211, 292, 643, 1093, 1345, 1411
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 2 cut(s) 17, 674
MluCI AATT 6 cut(s) 447, 616, 746, 791, 889, 1167
MlyI GAGTC 3 cut(s) 50, 299, 569
MmeI TCCRAC 1 cut(s) 1227
MroNI GCCGGC 1 cut(s) 230
MseI TTAA 2 cut(s) 822, 1032
MslI CAYNNNNRTG 1 cut(s) 1127
MspI CCGG 7 cut(s) 53, 141, 158, 231, 396, 674, 1151
MspR9I CCNGG 6 cut(s) 158, 262, 397, 674, 783, 1151
Mva1269I GAATGC 1 cut(s) 847
MvaI CCWGG 2 cut(s) 262, 783
MvnI CGCG 3 cut(s) 470, 908, 1050
MwoI GCNNNNNNNGC 8 cut(s) 236, 294, 492, 504, 695, 842, 1220, 1335
NaeI GCCGGC 1 cut(s) 232
NciI CCSGG 4 cut(s) 158, 397, 674, 1151
NdeII GATC 6 cut(s) 60, 78, 90, 912, 943, 1299
NgoMIV GCCGGC 1 cut(s) 230
NlaIII CATG 8 cut(s) 313, 334, 421, 436, 493, 685, 950, 1132
NlaIV GGNNCC 4 cut(s) 266, 565, 671, 1200
NmeAIII GCCGAG 2 cut(s) 264, 862
NmuCI GTSAC 1 cut(s) 355
NruI TCGCGA 1 cut(s) 1050
NspI RCATGY 1 cut(s) 685
NspV TTCGAA 1 cut(s) 515
PagI TCATGA 1 cut(s) 417
PceI AGGCCT 1 cut(s) 260
PciI ACATGT 1 cut(s) 681
PciSI GCTCTTC 1 cut(s) 1328
PcsI WCGNNNNNNNCGW 4 cut(s) 65, 168, 411, 1322
PctI GAATGC 1 cut(s) 847
PdiI GCCGGC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 144, 1313
PflFI GACNNNGTC 2 cut(s) 164, 413
PflMI CCANNNNNTGG 1 cut(s) 261
PleI GAGTC 3 cut(s) 50, 299, 569
PpsI GAGTC 3 cut(s) 50, 299, 569
PscI ACATGT 1 cut(s) 681
PsiI TTATAA 1 cut(s) 1008
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 260, 781
PspGI CCWGG 2 cut(s) 260, 781
PspN4I GGNNCC 4 cut(s) 266, 565, 671, 1200
PspPI GGNCC 2 cut(s) 228, 563
PsuI RGATCY 1 cut(s) 90
PsyI GACNNNGTC 2 cut(s) 164, 413
RigI GGCCGGCC 1 cut(s) 234
RruI TCGCGA 1 cut(s) 1050
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 1127
SacI GAGCTC 1 cut(s) 17
SalI GTCGAC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 1328
SaqAI TTAA 2 cut(s) 822, 1032
Sau3AI GATC 6 cut(s) 60, 78, 90, 912, 943, 1299
Sau96I GGNCC 2 cut(s) 228, 563
SchI GAGTC 3 cut(s) 50, 299, 569
ScrFI CCNGG 6 cut(s) 158, 262, 397, 674, 783, 1151
SduI GDGCHC 2 cut(s) 17, 674
SfaNI GCATC 2 cut(s) 685, 764
SfuI TTCGAA 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 1127
Sse9I AATT 6 cut(s) 447, 616, 746, 791, 889, 1167
SseBI AGGCCT 1 cut(s) 260
SspMI CTAG 2 cut(s) 524, 1417
SstI GAGCTC 1 cut(s) 17
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 6 cut(s) 156, 260, 395, 672, 781, 1149
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 3 cut(s) 355, 637, 1193
TaiI ACGT 3 cut(s) 165, 425, 462
TasI AATT 6 cut(s) 447, 616, 746, 791, 889, 1167
TauI GCSGC 7 cut(s) 112, 291, 395, 470, 498, 510, 1121
TfiI GAWTC 2 cut(s) 144, 1313
Tru1I TTAA 2 cut(s) 822, 1032
Tru9I TTAA 2 cut(s) 822, 1032
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 5 cut(s) 112, 883, 958, 1115, 1214
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 3 cut(s) 557, 776, 1326
TspGWI ACGGA 1 cut(s) 459
Tth111I GACNNNGTC 2 cut(s) 164, 413
Van91I CCANNNNNTGG 1 cut(s) 261
XapI RAATTY 5 cut(s) 447, 616, 746, 791, 1167
XceI RCATGY 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 2 cut(s) 524, 1417
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.