Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8287801.1

Orthogroup ID

OG0011565

Physical Location & Seq

Genomic Coordinates Forward (+)

238 .. 863

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8287801.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 626 bp

atggaggagttgagctctcatcccccgccttcttcacacatcaccactctgccggactcgatcacaccgacggccaagatcatctgcgagatcctcttccgccaatcgccgcagcaaatctgccccgccctcgcctccaccggaatcgtccccaccccggacgtcgtcgtcgaagtcctccgcctctcctacgactaccccttctccgccgtcaagttcttccaatgggccggcctcgcccacaagcactcccccaaggcctggaacctcatcgtcgacctcctcggccgcaaccgcctcttcgactccatgtgggacgccatccgctccatgcgcgacgaagccactctctccgtcaccaccttcgccttcgccttcgccaactactccgccgccgggaggttcgacgacgccgtcatgacgtttcaggtcatggacaagtacggaatttcgcaacgcgtcgcggccgcgaactcgctcctcagcgctatgtgcggccaaaacggcggcgtttcgaaggctctagggtttctggagacgatgaaggggagcgaggagttcggccccgacggggactcgttcgccattttgctggaaggtttggacaaggaagggaacttggcgac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

209

Amino Acids

22.74

Weight (kDa)

5.02

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011565)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g24890
malus_domestica	MD06G1011600.v1.1
prunus_persica	Prupe.5G014300_v2.0.a1 Prupe.5G014300_v2.0.a1 Prupe.5G014300_v2.0.a1 Prupe.5G014300_v2.0.a1
pyrus_communis	pycom06g00980
rosa_chinensis	RchiOBHm_Chr7g0215211
rosa_laevigata	RLG00000002683
rosa_multiflora	Rmu_co8287801.1_g000001 Rmu_sc0006273.1_g000013 Rmu_sc0029270.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244470 Rroxscaffold_3G00244480
rosa_rugosa	Rorug07G0150700
rosa_samantha	Rh7AG287700 Rh7BG279400 Rh7CG307500 Rh7DG291000
rosa_wichuraiana	Rw7G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	167, 413
AatII	GACGTC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	261
AccBSI	CCGCTC	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	4 cut(s)	336, 459, 464, 470
AclWI	GGATC	1 cut(s)	85
AcoI	YGGCCR	4 cut(s)	72, 286, 465, 496
AcsI	RAATTY	1 cut(s)	447
AcyI	GRCGYC	3 cut(s)	162, 318, 411
AfaI	GTAC	1 cut(s)	443
AfeI	AGCGCT	1 cut(s)	487
AfiI	CCNNNNNNNGG	5 cut(s)	157, 261, 396, 399, 571
AflIII	ACRYGT	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	85
Aor51HI	AGCGCT	1 cut(s)	487
AoxI	GGCC	8 cut(s)	72, 228, 232, 258, 286, 465, 496, 562
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	447
AspLEI	GCGC	2 cut(s)	336, 488
AspS9I	GGNCC	2 cut(s)	228, 563
AsuC2I	CCSGG	2 cut(s)	158, 397
AsuHPI	GGTGA	2 cut(s)	34, 349
AsuII	TTCGAA	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	4 cut(s)	87, 194, 398, 520
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	2 cut(s)	158, 397
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	524
BfoI	RGCGCY	1 cut(s)	489
BglI	GCCNNNNNGGC	1 cut(s)	504
BisI	GCNGC	8 cut(s)	110, 113, 289, 393, 465, 468, 496, 508
BlsI	GCNGC	8 cut(s)	111, 114, 290, 394, 466, 469, 497, 509
Bme1390I	CCNGG	3 cut(s)	158, 262, 397
BmgT120I	GGNCC	2 cut(s)	228, 563
BmiI	GGNNCC	2 cut(s)	266, 565
BmrFI	CCNGG	3 cut(s)	158, 262, 397
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	482
Bpu14I	TTCGAA	1 cut(s)	515
BpuMI	CCSGG	2 cut(s)	158, 397
BsaHI	GRCGYC	3 cut(s)	162, 318, 411
BsaJI	CCNNGG	3 cut(s)	156, 255, 283
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 233, 263
Bsc4I	CCNNNNNNNGG	5 cut(s)	157, 261, 396, 399, 571
Bse118I	RCCGGY	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	156, 255, 283
BseGI	GGATG	2 cut(s)	19, 321
BseLI	CCNNNNNNNGG	5 cut(s)	157, 261, 396, 399, 571
BseMII	CTCAG	1 cut(s)	496
BseRI	GAGGAG	4 cut(s)	20, 272, 470, 569
BseX3I	CGGCCG	2 cut(s)	286, 465
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	4 cut(s)	336, 459, 464, 470
Bsh1285I	CGRYCG	2 cut(s)	289, 468
BshFI	GGCC	8 cut(s)	74, 230, 234, 260, 288, 467, 498, 564
BsiEI	CGRYCG	2 cut(s)	289, 468
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	5 cut(s)	53, 141, 158, 231, 396
BslFI	GGGAC	3 cut(s)	134, 329, 587
BslI	CCNNNNNNNGG	5 cut(s)	157, 261, 396, 399, 571
BsmAI	GTCTC	1 cut(s)	530
BsmBI	CGTCTC	1 cut(s)	530
BsmFI	GGGAC	3 cut(s)	134, 329, 587
BsnI	GGCC	8 cut(s)	74, 230, 234, 260, 288, 467, 498, 564
Bsp119I	TTCGAA	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	60, 78, 90
BspANI	GGCC	8 cut(s)	74, 230, 234, 260, 288, 467, 498, 564
BspCNI	CTCAG	1 cut(s)	495
BspFNI	CGCG	4 cut(s)	336, 459, 464, 470
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	266, 565
BspPI	GGATC	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	3 cut(s)	156, 255, 283
BssMI	GATC	3 cut(s)	60, 78, 90
BssNI	GRCGYC	3 cut(s)	162, 318, 411
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	101, 305
BstACI	GRCGYC	3 cut(s)	162, 318, 411
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	482
BstF5I	GGATG	2 cut(s)	19, 321
BstFNI	CGCG	4 cut(s)	336, 459, 464, 470
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	2 cut(s)	336, 488
BstKTI	GATC	3 cut(s)	63, 81, 93
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	3 cut(s)	60, 78, 90
BstMCI	CGRYCG	2 cut(s)	289, 468
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 294, 333, 492, 504
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	156, 260, 395
BstUI	CGCG	4 cut(s)	336, 459, 464, 470
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	90
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	90
BstZI	CGGCCG	2 cut(s)	286, 465
BsuRI	GGCC	8 cut(s)	74, 230, 234, 260, 288, 467, 498, 564
BtsCI	GGATG	2 cut(s)	19, 321
Cac8I	GCNNGC	1 cut(s)	232
CciI	TCATGA	1 cut(s)	417
CciNI	GCGGCCGC	1 cut(s)	465
CfoI	GCGC	2 cut(s)	336, 488
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	228, 563
CseI	GACGC	3 cut(s)	326, 419, 448
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	4 cut(s)	310, 331, 418, 433
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	3 cut(s)	62, 80, 92
DpnII	GATC	3 cut(s)	60, 78, 90
DrdI	GACNNNNNNGTC	2 cut(s)	167, 413
DseDI	GACNNNNNNGTC	2 cut(s)	167, 413
EaeI	YGGCCR	4 cut(s)	72, 286, 465, 496
EagI	CGGCCG	2 cut(s)	286, 465
Eam1104I	CTCTTC	2 cut(s)	101, 305
EarI	CTCTTC	2 cut(s)	101, 305
EciI	GGCGGA	4 cut(s)	89, 170, 196, 379
Ecl136II	GAGCTC	1 cut(s)	15
EclXI	CGGCCG	2 cut(s)	286, 465
Eco130I	CCWWGG	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	17
Eco47III	AGCGCT	1 cut(s)	487
Eco52I	CGGCCG	2 cut(s)	286, 465
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	4 cut(s)	313, 334, 421, 436
FaiI	YATR	5 cut(s)	311, 332, 419, 434, 491
FaqI	GGGAC	3 cut(s)	134, 329, 587
FatI	CATG	4 cut(s)	309, 330, 417, 432
FauI	CCCGC	2 cut(s)	33, 133
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	8 cut(s)	110, 113, 289, 393, 465, 468, 496, 508
FokI	GGATG	2 cut(s)	6, 308
FriOI	GRGCYC	1 cut(s)	17
FseI	GGCCGGCC	1 cut(s)	234
Fsp4HI	GCNGC	8 cut(s)	110, 113, 289, 393, 465, 468, 496, 508
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	2 cut(s)	335, 487
GluI	GCNGC	8 cut(s)	110, 113, 289, 393, 465, 468, 496, 508
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	8 cut(s)	74, 230, 234, 260, 288, 467, 498, 564
HapII	CCGG	5 cut(s)	53, 141, 158, 231, 396
HgaI	GACGC	3 cut(s)	326, 419, 448
HhaI	GCGC	2 cut(s)	336, 488
Hin1I	GRCGYC	3 cut(s)	162, 318, 411
Hin1II	CATG	4 cut(s)	313, 334, 421, 436
Hin6I	GCGC	2 cut(s)	334, 486
HinP1I	GCGC	2 cut(s)	334, 486
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	4 cut(s)	56, 144, 305, 575
HpaII	CCGG	5 cut(s)	53, 141, 158, 231, 396
HphI	GGTGA	2 cut(s)	34, 349
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	418, 533
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	9 cut(s)	39, 211, 373, 379, 385, 511, 538, 590, 605
HpyCH4IV	ACGT	2 cut(s)	162, 422
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 294, 333, 492, 504
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	2 cut(s)	162, 422
Hsp92I	GRCGYC	3 cut(s)	162, 318, 411
Hsp92II	CATG	4 cut(s)	313, 334, 421, 436
HspAI	GCGC	2 cut(s)	334, 486
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	60, 78, 90
LmnI	GCTCC	3 cut(s)	332, 483, 549
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	2 cut(s)	162, 422
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	62, 80, 92
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	3 cut(s)	60, 78, 90
MboII	GAAGA	4 cut(s)	24, 88, 211, 292
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	1 cut(s)	447
MluI	ACGCGT	1 cut(s)	457
MlyI	GAGTC	3 cut(s)	50, 299, 569
MroNI	GCCGGC	1 cut(s)	230
MspI	CCGG	5 cut(s)	53, 141, 158, 231, 396
MspR9I	CCNGG	3 cut(s)	158, 262, 397
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	4 cut(s)	336, 459, 464, 470
MwoI	GCNNNNNNNGC	5 cut(s)	236, 294, 333, 492, 504
NaeI	GCCGGC	1 cut(s)	232
NciI	CCSGG	2 cut(s)	158, 397
NdeII	GATC	3 cut(s)	60, 78, 90
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	4 cut(s)	313, 334, 421, 436
NlaIV	GGNNCC	2 cut(s)	266, 565
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	355
NotI	GCGGCCGC	1 cut(s)	465
NspV	TTCGAA	1 cut(s)	515
PagI	TCATGA	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	3 cut(s)	65, 168, 411
PdiI	GCCGGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	144
PflFI	GACNNNGTC	2 cut(s)	164, 413
PflMI	CCANNNNNTGG	1 cut(s)	261
PkrI	GCNGC	8 cut(s)	111, 114, 290, 394, 466, 469, 497, 509
PleI	GAGTC	3 cut(s)	50, 299, 569
PpsI	GAGTC	3 cut(s)	50, 299, 569
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	266, 565
PspPI	GGNCC	2 cut(s)	228, 563
PsuI	RGATCY	1 cut(s)	90
PsyI	GACNNNGTC	2 cut(s)	164, 413
RigI	GGCCGGCC	1 cut(s)	234
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SacI	GAGCTC	1 cut(s)	17
SalI	GTCGAC	1 cut(s)	275
SatI	GCNGC	8 cut(s)	110, 113, 289, 393, 465, 468, 496, 508
Sau3AI	GATC	3 cut(s)	60, 78, 90
Sau96I	GGNCC	2 cut(s)	228, 563
SchI	GAGTC	3 cut(s)	50, 299, 569
ScrFI	CCNGG	3 cut(s)	158, 262, 397
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	9 cut(s)	17, 165, 270, 282, 365, 404, 425, 432, 601
SfuI	TTCGAA	1 cut(s)	515
Sse9I	AATT	1 cut(s)	447
SseBI	AGGCCT	1 cut(s)	260
SspMI	CTAG	1 cut(s)	524
SstI	GAGCTC	1 cut(s)	17
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	3 cut(s)	156, 260, 395
StyI	CCWWGG	1 cut(s)	255
TaiI	ACGT	2 cut(s)	165, 425
TaqI	TCGA	6 cut(s)	59, 171, 276, 303, 405, 515
TasI	AATT	1 cut(s)	447
TauI	GCSGC	7 cut(s)	112, 291, 395, 467, 470, 498, 510
TfiI	GAWTC	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	557
TspGWI	ACGGA	2 cut(s)	343, 459
Tth111I	GACNNNGTC	2 cut(s)	164, 413
Van91I	CCANNNNNTGG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	447
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	1 cut(s)	524
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.