Rroxscaffold_3G00244470

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
37244390 .. 37245583
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00244470.1

Sequence Viewer

Length: 1194 bp
ATGGGCCGGCCTGGCCCACAAGCACTCCCCAAGGCCTGGAACCTCATCGTCGACCTCCTCGGCCGCAACCGCCTCTTCGACTCCATGTGGGACGCCATCCGCTCCATGCGAGACGAAGCCACTCTCTCCGTCACCACCTTCGCCTTCGCCTTCGCCAACTACTCCGCCGCCGGGAGGTTCGACGACGCCGTCATGACGTTTCAGGTCATGGACAAGTACGGAATTTCGCAACGCGTCGTGGCGGCGAACTCGCTCCTCAGCGCCATGTGCGGCCAAAACGGCGGCGTTTCGAAGGCTCTTGGGTTTCTGGAGACGATGAAGGGGAGCGAGGAGTTCGGCCCCGACGGGGACTCGTTCGCCATTTTGCTGGAAGGTTTGGAGAAGGAAGGGAATTTAGCGAGAGCGCAGACGGTGTTTGGGGAGATGGTGGTGAGAGTTGGGTGGAGCCCGGCGAACATGTCGGCTTACGATGCCTTCTTGTCGACGCTGGTGAGGGGCGGGGAAACCGACGAGGCTGTCAAATTCTTGGGAGTGATGAACAAGAATGGATGCTTGCCAGGTTTGAAATTCTTTTCCAATGCTATTGATATTCTTGTTAAGGAAAAGAGTGCCGAGAATGCTGTATTGGTTTGGGATATTATGGTTGGTAATGGCTTGCTTCCTAAATTGTCGATGTATAATGCGATGATCGGATTGATGTGCGATTCTAATGAGGTGGATCATGCGTTTCGGCTGCTTGATGAGATGGTGTTCAATGGTGCTTTCCCTGATTGTTTTACTTATAATGCTATATTCAAGTGCTTGATTAAGAACAACAAGGTTCGCGAGGCGGGGAAGTTCTTTGTGGAGATGGTGAAGAATGAGTGCCTGCCGACACATTTCAACTTTGCTGCGGCCATCACCATGTTTTTCGATGGGGATGACCCGGAAATGGGGGTCGAAATTTGGAACTTTATGGTTGAGAACCGTGTGGAGCCTCTTGATGTTGCTGCCAATGCGTTGCTTTTGGGTCTTTGTAAGTTGGATAGGTTGTCGGAGTTGAGGAGGAGTGCTGATGATATGCTTGATAGAAGGATCAGCATTTATGAATCAACTATGGCGAGCTTGAAGAGCGCCTACTATAAGGATGGCAGAGGTGCTAAGGATAAATATGATGGTTTGGCAAGGAGGTGGAAGACCTCTTTGGCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

397

Amino Acids

44.01

Weight (kDa)

5.2

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 217 - 250 1.4e-06 PPR repeat
PPR_2 PF13041 223 - 270 1.3e-12 PPR repeat family
PPR_2 PF13041 256 - 295 2.4e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
AasI GACNNNNNNGTC 2 cut(s) 188, 515
AccB7I CCANNNNNTGG 1 cut(s) 36
AccBSI CCGCTC 1 cut(s) 102
AccI GTMKAC 2 cut(s) 51, 482
AccII CGCG 2 cut(s) 234, 825
AclWI GGATC 2 cut(s) 726, 1082
AcoI YGGCCR 3 cut(s) 61, 271, 894
AcsI RAATTY 5 cut(s) 222, 391, 521, 566, 942
AcyI GRCGYC 2 cut(s) 93, 186
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 6 cut(s) 36, 171, 174, 346, 931, 932
AflIII ACRYGT 2 cut(s) 232, 456
AgsI TTSAA 5 cut(s) 565, 754, 796, 883, 1108
AjnI CCWGG 3 cut(s) 10, 35, 556
AjuI GAANNNNNNNTTGG 3 cut(s) 608, 640, 1166
AluBI AGCT 1 cut(s) 1104
AluI AGCT 1 cut(s) 1104
Alw26I GTCTC 2 cut(s) 105, 305
AlwI GGATC 2 cut(s) 726, 1082
AoxI GGCC 8 cut(s) 4, 8, 13, 33, 61, 271, 337, 894
ApeKI GCWGC 3 cut(s) 733, 890, 989
ApoI RAATTY 5 cut(s) 222, 391, 521, 566, 942
AspLEI GCGC 3 cut(s) 263, 406, 1115
AspS9I GGNCC 3 cut(s) 4, 14, 338
AsuC2I CCSGG 3 cut(s) 172, 449, 926
AsuHPI GGTGA 5 cut(s) 124, 442, 502, 865, 892
AsuII TTCGAA 1 cut(s) 290
BanII GRGCYC 1 cut(s) 449
BarI GAAGNNNNNNTAC 2 cut(s) 1100, 1132
BbsI GAAGAC 1 cut(s) 1181
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 720, 877, 976
BccI CCATC 8 cut(s) 104, 418, 739, 844, 905, 908, 1121, 1148
BceAI ACGGC 2 cut(s) 173, 295
BciT130I CCWGG 3 cut(s) 12, 37, 558
BcnI CCSGG 3 cut(s) 172, 449, 926
BcoDI GTCTC 2 cut(s) 105, 305
BfaI CTAG 1 cut(s) 1192
BfoI RGCGCY 2 cut(s) 264, 1116
BglI GCCNNNNNGGC 2 cut(s) 12, 279
BisI GCNGC 9 cut(s) 64, 168, 243, 271, 283, 734, 891, 894, 990
BlsI GCNGC 9 cut(s) 65, 169, 244, 272, 284, 735, 892, 895, 991
Bme1390I CCNGG 6 cut(s) 12, 37, 172, 449, 558, 926
BmgT120I GGNCC 3 cut(s) 4, 14, 338
BmiI GGNNCC 4 cut(s) 41, 340, 446, 975
BmrFI CCNGG 6 cut(s) 12, 37, 172, 449, 558, 926
BmsI GCATC 2 cut(s) 460, 539
BpiI GAAGAC 1 cut(s) 1181
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 2 cut(s) 257, 1140
Bpu14I TTCGAA 1 cut(s) 290
BpuMI CCSGG 3 cut(s) 172, 449, 926
BsaHI GRCGYC 2 cut(s) 93, 186
BsaJI CCNNGG 2 cut(s) 30, 58
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 6 cut(s) 36, 171, 174, 346, 931, 932
Bse118I RCCGGY 1 cut(s) 6
BseBI CCWGG 3 cut(s) 12, 37, 558
BseDI CCNNGG 2 cut(s) 30, 58
BseGI GGATG 4 cut(s) 96, 554, 925, 1132
BseLI CCNNNNNNNGG 6 cut(s) 36, 171, 174, 346, 931, 932
BseMII CTCAG 1 cut(s) 271
BseRI GAGGAG 5 cut(s) 47, 245, 344, 1057, 1060
BseX3I CGGCCG 1 cut(s) 61
BseXI GCAGC 3 cut(s) 720, 877, 976
Bsh1236I CGCG 2 cut(s) 234, 825
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 8 cut(s) 6, 10, 15, 35, 63, 273, 339, 896
BsiEI CGRYCG 1 cut(s) 64
BsiSI CCGG 4 cut(s) 7, 171, 449, 926
BslFI GGGAC 2 cut(s) 104, 362
BslI CCNNNNNNNGG 6 cut(s) 36, 171, 174, 346, 931, 932
BsmAI GTCTC 2 cut(s) 105, 305
BsmBI CGTCTC 2 cut(s) 105, 305
BsmFI GGGAC 2 cut(s) 104, 362
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 8 cut(s) 6, 10, 15, 35, 63, 273, 339, 896
Bsp119I TTCGAA 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 3 cut(s) 687, 718, 1074
Bsp68I TCGCGA 1 cut(s) 825
BspANI GGCC 8 cut(s) 6, 10, 15, 35, 63, 273, 339, 896
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 2 cut(s) 234, 825
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 4 cut(s) 41, 340, 446, 975
BspPI GGATC 2 cut(s) 726, 1082
BspQI GCTCTTC 1 cut(s) 1103
BspT104I TTCGAA 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 6
BssAI RCCGGY 1 cut(s) 6
BssECI CCNNGG 2 cut(s) 30, 58
BssMI GATC 3 cut(s) 687, 718, 1074
BssNI GRCGYC 2 cut(s) 93, 186
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 3 cut(s) 12, 37, 558
Bst4CI ACNGT 2 cut(s) 412, 968
Bst6I CTCTTC 2 cut(s) 80, 1103
BstACI GRCGYC 2 cut(s) 93, 186
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 6 cut(s) 8, 554, 656, 869, 1102, 1189
BstDEI CTNAG 2 cut(s) 257, 1140
BstF5I GGATG 4 cut(s) 96, 554, 925, 1132
BstFNI CGCG 2 cut(s) 234, 825
BstH2I RGCGCY 2 cut(s) 264, 1116
BstHHI GCGC 3 cut(s) 263, 406, 1115
BstKTI GATC 3 cut(s) 690, 721, 1077
BstMAI GTCTC 2 cut(s) 105, 305
BstMBI GATC 3 cut(s) 687, 718, 1074
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 8 cut(s) 12, 69, 267, 279, 470, 617, 995, 1110
BstNI CCWGG 3 cut(s) 12, 37, 558
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 6 cut(s) 10, 35, 170, 447, 556, 924
BstUI CGCG 2 cut(s) 234, 825
BstV1I GCAGC 3 cut(s) 720, 877, 976
BstV2I GAAGAC 1 cut(s) 1181
BstXI CCANNNNNNTGG 1 cut(s) 367
BstZI CGGCCG 1 cut(s) 61
BsuRI GGCC 8 cut(s) 6, 10, 15, 35, 63, 273, 339, 896
BtgZI GCGATG 1 cut(s) 698
BtsCI GGATG 4 cut(s) 96, 554, 925, 1132
BtuMI TCGCGA 1 cut(s) 825
Cac8I GCNNGC 6 cut(s) 8, 554, 656, 869, 1102, 1189
CciI TCATGA 1 cut(s) 192
CfoI GCGC 3 cut(s) 263, 406, 1115
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 4, 14, 338
CseI GACGC 4 cut(s) 101, 194, 223, 493
Csp6I GTAC 1 cut(s) 217
CviAII CATG 8 cut(s) 85, 106, 193, 208, 265, 457, 722, 904
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 257, 1140
DpnI GATC 3 cut(s) 689, 720, 1076
DpnII GATC 3 cut(s) 687, 718, 1074
DrdI GACNNNNNNGTC 2 cut(s) 188, 515
DseDI GACNNNNNNGTC 2 cut(s) 188, 515
EaeI YGGCCR 3 cut(s) 61, 271, 894
EagI CGGCCG 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 80, 1103
EarI CTCTTC 2 cut(s) 80, 1103
EciI GGCGGA 1 cut(s) 154
EclXI CGGCCG 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 30
Eco147I AGGCCT 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 449
Eco52I CGGCCG 1 cut(s) 61
EcoRII CCWGG 3 cut(s) 10, 35, 556
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 2 cut(s) 105, 305
FaeI CATG 8 cut(s) 88, 109, 196, 211, 268, 460, 725, 907
FaqI GGGAC 2 cut(s) 104, 362
FatI CATG 8 cut(s) 84, 105, 192, 207, 264, 456, 721, 903
FauI CCCGC 2 cut(s) 491, 823
FblI GTMKAC 2 cut(s) 51, 482
Fnu4HI GCNGC 9 cut(s) 64, 168, 243, 271, 283, 734, 891, 894, 990
FokI GGATG 4 cut(s) 83, 561, 932, 1139
FriOI GRGCYC 1 cut(s) 449
FseI GGCCGGCC 1 cut(s) 10
Fsp4HI GCNGC 9 cut(s) 64, 168, 243, 271, 283, 734, 891, 894, 990
FspBI CTAG 1 cut(s) 1192
GlaI GCGC 3 cut(s) 262, 405, 1114
GluI GCNGC 9 cut(s) 64, 168, 243, 271, 283, 734, 891, 894, 990
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 2 cut(s) 264, 1116
HaeIII GGCC 8 cut(s) 6, 10, 15, 35, 63, 273, 339, 896
HapII CCGG 4 cut(s) 7, 171, 449, 926
HgaI GACGC 4 cut(s) 101, 194, 223, 493
HhaI GCGC 3 cut(s) 263, 406, 1115
Hin1I GRCGYC 2 cut(s) 93, 186
Hin1II CATG 8 cut(s) 88, 109, 196, 211, 268, 460, 725, 907
Hin6I GCGC 3 cut(s) 261, 404, 1113
HinP1I GCGC 3 cut(s) 261, 404, 1113
HincII GTYRAC 2 cut(s) 52, 483
HindII GTYRAC 2 cut(s) 52, 483
HinfI GANTC 4 cut(s) 80, 350, 704, 1088
HpaII CCGG 4 cut(s) 7, 171, 449, 926
HphI GGTGA 5 cut(s) 124, 442, 502, 865, 892
Hpy166II GTNNAC 2 cut(s) 52, 483
Hpy188I TCNGA 2 cut(s) 692, 1036
Hpy188III TCNNGA 4 cut(s) 193, 308, 824, 980
Hpy8I GTNNAC 2 cut(s) 52, 483
Hpy99I CGWCG 7 cut(s) 53, 185, 188, 239, 347, 487, 512
HpyCH4III ACNGT 2 cut(s) 412, 968
HpyCH4IV ACGT 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 8 cut(s) 12, 69, 267, 279, 470, 617, 995, 1110
HpyF3I CTNAG 2 cut(s) 257, 1140
HpySE526I ACGT 1 cut(s) 197
Hsp92I GRCGYC 2 cut(s) 93, 186
Hsp92II CATG 8 cut(s) 88, 109, 196, 211, 268, 460, 725, 907
HspAI GCGC 3 cut(s) 261, 404, 1113
KroI GCCGGC 1 cut(s) 6
KroNI GCCGGC 1 cut(s) 8
Kzo9I GATC 3 cut(s) 687, 718, 1074
LguI GCTCTTC 1 cut(s) 1103
LmnI GCTCC 5 cut(s) 107, 258, 324, 444, 973
Lsp1109I GCAGC 3 cut(s) 720, 877, 976
LweI GCATC 2 cut(s) 460, 539
MaeI CTAG 1 cut(s) 1192
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 130
MalI GATC 3 cut(s) 689, 720, 1076
MbiI CCGCTC 1 cut(s) 102
MboI GATC 3 cut(s) 687, 718, 1074
MboII GAAGA 4 cut(s) 67, 868, 1120, 1186
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 6 cut(s) 222, 391, 521, 566, 665, 942
MluI ACGCGT 1 cut(s) 232
MlyI GAGTC 2 cut(s) 74, 344
MmeI TCCRAC 2 cut(s) 1002, 1014
MroNI GCCGGC 1 cut(s) 6
MseI TTAA 2 cut(s) 597, 807
MslI CAYNNNNRTG 1 cut(s) 902
MspI CCGG 4 cut(s) 7, 171, 449, 926
MspR9I CCNGG 6 cut(s) 12, 37, 172, 449, 558, 926
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 3 cut(s) 12, 37, 558
MvnI CGCG 2 cut(s) 234, 825
MwoI GCNNNNNNNGC 8 cut(s) 12, 69, 267, 279, 470, 617, 995, 1110
NaeI GCCGGC 1 cut(s) 8
NciI CCSGG 3 cut(s) 172, 449, 926
NdeII GATC 3 cut(s) 687, 718, 1074
NgoMIV GCCGGC 1 cut(s) 6
NlaIII CATG 8 cut(s) 88, 109, 196, 211, 268, 460, 725, 907
NlaIV GGNNCC 4 cut(s) 41, 340, 446, 975
NmeAIII GCCGAG 2 cut(s) 39, 637
NmuCI GTSAC 1 cut(s) 130
NruI TCGCGA 1 cut(s) 825
NspI RCATGY 1 cut(s) 460
NspV TTCGAA 1 cut(s) 290
PagI TCATGA 1 cut(s) 192
PceI AGGCCT 1 cut(s) 35
PciI ACATGT 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PctI GAATGC 1 cut(s) 622
PdiI GCCGGC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 704, 1088
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 9 cut(s) 65, 169, 244, 272, 284, 735, 892, 895, 991
PleI GAGTC 2 cut(s) 74, 344
PpsI GAGTC 2 cut(s) 74, 344
PscI ACATGT 1 cut(s) 456
PsiI TTATAA 1 cut(s) 783
Psp6I CCWGG 3 cut(s) 10, 35, 556
PspGI CCWGG 3 cut(s) 10, 35, 556
PspN4I GGNNCC 4 cut(s) 41, 340, 446, 975
PspPI GGNCC 3 cut(s) 4, 14, 338
PsyI GACNNNGTC 1 cut(s) 188
RigI GGCCGGCC 1 cut(s) 10
RruI TCGCGA 1 cut(s) 825
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 902
SalI GTCGAC 2 cut(s) 50, 481
SapI GCTCTTC 1 cut(s) 1103
SaqAI TTAA 2 cut(s) 597, 807
SatI GCNGC 9 cut(s) 64, 168, 243, 271, 283, 734, 891, 894, 990
Sau3AI GATC 3 cut(s) 687, 718, 1074
Sau96I GGNCC 3 cut(s) 4, 14, 338
SchI GAGTC 2 cut(s) 74, 344
ScrFI CCNGG 6 cut(s) 12, 37, 172, 449, 558, 926
SduI GDGCHC 1 cut(s) 449
SfaNI GCATC 2 cut(s) 460, 539
SfiI GGCCNNNNNGGCC 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 902
Sse9I AATT 6 cut(s) 222, 391, 521, 566, 665, 942
SseBI AGGCCT 1 cut(s) 35
SspMI CTAG 1 cut(s) 1192
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 6 cut(s) 10, 35, 170, 447, 556, 924
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 412, 968
TaiI ACGT 1 cut(s) 200
TaqI TCGA 8 cut(s) 51, 78, 180, 290, 482, 671, 912, 939
TasI AATT 6 cut(s) 222, 391, 521, 566, 665, 942
TauI GCSGC 6 cut(s) 66, 170, 245, 273, 285, 896
TfiI GAWTC 2 cut(s) 704, 1088
Tru1I TTAA 2 cut(s) 597, 807
Tru9I TTAA 2 cut(s) 597, 807
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 3 cut(s) 733, 890, 989
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 332, 551, 1101
TspGWI ACGGA 2 cut(s) 118, 234
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 36
XapI RAATTY 5 cut(s) 222, 391, 521, 566, 942
XceI RCATGY 1 cut(s) 460
XmiI GTMKAC 2 cut(s) 51, 482
XspI CTAG 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.