Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g24890 |
| malus_domestica | MD06G1011600.v1.1 |
| prunus_persica | Prupe.5G014300_v2.0.a1 Prupe.5G014300_v2.0.a1 Prupe.5G014300_v2.0.a1 Prupe.5G014300_v2.0.a1 |
| pyrus_communis | pycom06g00980 |
| rosa_chinensis | RchiOBHm_Chr7g0215211 |
| rosa_laevigata | RLG00000002683 |
| rosa_multiflora | Rmu_co8287801.1_g000001 Rmu_sc0006273.1_g000013 Rmu_sc0029270.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00244470 Rroxscaffold_3G00244480 |
| rosa_rugosa | Rorug07G0150700 |
| rosa_samantha | Rh7AG287700 Rh7BG279400 Rh7CG307500 Rh7DG291000 |
| rosa_wichuraiana | Rw7G024560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 783 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 188, 515 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 36 |
| AccBSI | CCGCTC | 1 cut(s) | 102 |
| AccI | GTMKAC | 2 cut(s) | 51, 482 |
| AccII | CGCG | 2 cut(s) | 234, 825 |
| AclWI | GGATC | 2 cut(s) | 726, 1082 |
| AcoI | YGGCCR | 3 cut(s) | 61, 271, 894 |
| AcsI | RAATTY | 5 cut(s) | 222, 391, 521, 566, 942 |
| AcyI | GRCGYC | 2 cut(s) | 93, 186 |
| AfaI | GTAC | 1 cut(s) | 218 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 36, 171, 174, 346, 931, 932 |
| AflIII | ACRYGT | 2 cut(s) | 232, 456 |
| AgsI | TTSAA | 5 cut(s) | 565, 754, 796, 883, 1108 |
| AjnI | CCWGG | 3 cut(s) | 10, 35, 556 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 608, 640, 1166 |
| AluBI | AGCT | 1 cut(s) | 1104 |
| AluI | AGCT | 1 cut(s) | 1104 |
| Alw26I | GTCTC | 2 cut(s) | 105, 305 |
| AlwI | GGATC | 2 cut(s) | 726, 1082 |
| AoxI | GGCC | 8 cut(s) | 4, 8, 13, 33, 61, 271, 337, 894 |
| ApeKI | GCWGC | 3 cut(s) | 733, 890, 989 |
| ApoI | RAATTY | 5 cut(s) | 222, 391, 521, 566, 942 |
| AspLEI | GCGC | 3 cut(s) | 263, 406, 1115 |
| AspS9I | GGNCC | 3 cut(s) | 4, 14, 338 |
| AsuC2I | CCSGG | 3 cut(s) | 172, 449, 926 |
| AsuHPI | GGTGA | 5 cut(s) | 124, 442, 502, 865, 892 |
| AsuII | TTCGAA | 1 cut(s) | 290 |
| BanII | GRGCYC | 1 cut(s) | 449 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1100, 1132 |
| BbsI | GAAGAC | 1 cut(s) | 1181 |
| BbvCI | CCTCAGC | 1 cut(s) | 257 |
| BbvI | GCAGC | 3 cut(s) | 720, 877, 976 |
| BccI | CCATC | 8 cut(s) | 104, 418, 739, 844, 905, 908, 1121, 1148 |
| BceAI | ACGGC | 2 cut(s) | 173, 295 |
| BciT130I | CCWGG | 3 cut(s) | 12, 37, 558 |
| BcnI | CCSGG | 3 cut(s) | 172, 449, 926 |
| BcoDI | GTCTC | 2 cut(s) | 105, 305 |
| BfaI | CTAG | 1 cut(s) | 1192 |
| BfoI | RGCGCY | 2 cut(s) | 264, 1116 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 12, 279 |
| BisI | GCNGC | 9 cut(s) | 64, 168, 243, 271, 283, 734, 891, 894, 990 |
| BlsI | GCNGC | 9 cut(s) | 65, 169, 244, 272, 284, 735, 892, 895, 991 |
| Bme1390I | CCNGG | 6 cut(s) | 12, 37, 172, 449, 558, 926 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 14, 338 |
| BmiI | GGNNCC | 4 cut(s) | 41, 340, 446, 975 |
| BmrFI | CCNGG | 6 cut(s) | 12, 37, 172, 449, 558, 926 |
| BmsI | GCATC | 2 cut(s) | 460, 539 |
| BpiI | GAAGAC | 1 cut(s) | 1181 |
| BpmI | CTGGAG | 1 cut(s) | 329 |
| Bpu10I | CCTNAGC | 2 cut(s) | 257, 1140 |
| Bpu14I | TTCGAA | 1 cut(s) | 290 |
| BpuMI | CCSGG | 3 cut(s) | 172, 449, 926 |
| BsaHI | GRCGYC | 2 cut(s) | 93, 186 |
| BsaJI | CCNNGG | 2 cut(s) | 30, 58 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 9, 39 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 36, 171, 174, 346, 931, 932 |
| Bse118I | RCCGGY | 1 cut(s) | 6 |
| BseBI | CCWGG | 3 cut(s) | 12, 37, 558 |
| BseDI | CCNNGG | 2 cut(s) | 30, 58 |
| BseGI | GGATG | 4 cut(s) | 96, 554, 925, 1132 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 36, 171, 174, 346, 931, 932 |
| BseMII | CTCAG | 1 cut(s) | 271 |
| BseRI | GAGGAG | 5 cut(s) | 47, 245, 344, 1057, 1060 |
| BseX3I | CGGCCG | 1 cut(s) | 61 |
| BseXI | GCAGC | 3 cut(s) | 720, 877, 976 |
| Bsh1236I | CGCG | 2 cut(s) | 234, 825 |
| Bsh1285I | CGRYCG | 1 cut(s) | 64 |
| BshFI | GGCC | 8 cut(s) | 6, 10, 15, 35, 63, 273, 339, 896 |
| BsiEI | CGRYCG | 1 cut(s) | 64 |
| BsiSI | CCGG | 4 cut(s) | 7, 171, 449, 926 |
| BslFI | GGGAC | 2 cut(s) | 104, 362 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 36, 171, 174, 346, 931, 932 |
| BsmAI | GTCTC | 2 cut(s) | 105, 305 |
| BsmBI | CGTCTC | 2 cut(s) | 105, 305 |
| BsmFI | GGGAC | 2 cut(s) | 104, 362 |
| BsmI | GAATGC | 1 cut(s) | 622 |
| BsnI | GGCC | 8 cut(s) | 6, 10, 15, 35, 63, 273, 339, 896 |
| Bsp119I | TTCGAA | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 1 cut(s) | 449 |
| Bsp143I | GATC | 3 cut(s) | 687, 718, 1074 |
| Bsp68I | TCGCGA | 1 cut(s) | 825 |
| BspANI | GGCC | 8 cut(s) | 6, 10, 15, 35, 63, 273, 339, 896 |
| BspCNI | CTCAG | 1 cut(s) | 270 |
| BspFNI | CGCG | 2 cut(s) | 234, 825 |
| BspHI | TCATGA | 1 cut(s) | 192 |
| BspLI | GGNNCC | 4 cut(s) | 41, 340, 446, 975 |
| BspPI | GGATC | 2 cut(s) | 726, 1082 |
| BspQI | GCTCTTC | 1 cut(s) | 1103 |
| BspT104I | TTCGAA | 1 cut(s) | 290 |
| BsrBI | CCGCTC | 1 cut(s) | 102 |
| BsrFI | RCCGGY | 1 cut(s) | 6 |
| BssAI | RCCGGY | 1 cut(s) | 6 |
| BssECI | CCNNGG | 2 cut(s) | 30, 58 |
| BssMI | GATC | 3 cut(s) | 687, 718, 1074 |
| BssNI | GRCGYC | 2 cut(s) | 93, 186 |
| BssT1I | CCWWGG | 1 cut(s) | 30 |
| Bst2UI | CCWGG | 3 cut(s) | 12, 37, 558 |
| Bst4CI | ACNGT | 2 cut(s) | 412, 968 |
| Bst6I | CTCTTC | 2 cut(s) | 80, 1103 |
| BstACI | GRCGYC | 2 cut(s) | 93, 186 |
| BstBI | TTCGAA | 1 cut(s) | 290 |
| BstC8I | GCNNGC | 6 cut(s) | 8, 554, 656, 869, 1102, 1189 |
| BstDEI | CTNAG | 2 cut(s) | 257, 1140 |
| BstF5I | GGATG | 4 cut(s) | 96, 554, 925, 1132 |
| BstFNI | CGCG | 2 cut(s) | 234, 825 |
| BstH2I | RGCGCY | 2 cut(s) | 264, 1116 |
| BstHHI | GCGC | 3 cut(s) | 263, 406, 1115 |
| BstKTI | GATC | 3 cut(s) | 690, 721, 1077 |
| BstMAI | GTCTC | 2 cut(s) | 105, 305 |
| BstMBI | GATC | 3 cut(s) | 687, 718, 1074 |
| BstMCI | CGRYCG | 1 cut(s) | 64 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 12, 69, 267, 279, 470, 617, 995, 1110 |
| BstNI | CCWGG | 3 cut(s) | 12, 37, 558 |
| BstNSI | RCATGY | 1 cut(s) | 460 |
| BstSCI | CCNGG | 6 cut(s) | 10, 35, 170, 447, 556, 924 |
| BstUI | CGCG | 2 cut(s) | 234, 825 |
| BstV1I | GCAGC | 3 cut(s) | 720, 877, 976 |
| BstV2I | GAAGAC | 1 cut(s) | 1181 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 367 |
| BstZI | CGGCCG | 1 cut(s) | 61 |
| BsuRI | GGCC | 8 cut(s) | 6, 10, 15, 35, 63, 273, 339, 896 |
| BtgZI | GCGATG | 1 cut(s) | 698 |
| BtsCI | GGATG | 4 cut(s) | 96, 554, 925, 1132 |
| BtuMI | TCGCGA | 1 cut(s) | 825 |
| Cac8I | GCNNGC | 6 cut(s) | 8, 554, 656, 869, 1102, 1189 |
| CciI | TCATGA | 1 cut(s) | 192 |
| CfoI | GCGC | 3 cut(s) | 263, 406, 1115 |
| Cfr10I | RCCGGY | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 14, 338 |
| CseI | GACGC | 4 cut(s) | 101, 194, 223, 493 |
| Csp6I | GTAC | 1 cut(s) | 217 |
| CviAII | CATG | 8 cut(s) | 85, 106, 193, 208, 265, 457, 722, 904 |
| CviQI | GTAC | 1 cut(s) | 217 |
| DdeI | CTNAG | 2 cut(s) | 257, 1140 |
| DpnI | GATC | 3 cut(s) | 689, 720, 1076 |
| DpnII | GATC | 3 cut(s) | 687, 718, 1074 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 188, 515 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 188, 515 |
| EaeI | YGGCCR | 3 cut(s) | 61, 271, 894 |
| EagI | CGGCCG | 1 cut(s) | 61 |
| Eam1104I | CTCTTC | 2 cut(s) | 80, 1103 |
| EarI | CTCTTC | 2 cut(s) | 80, 1103 |
| EciI | GGCGGA | 1 cut(s) | 154 |
| EclXI | CGGCCG | 1 cut(s) | 61 |
| Eco130I | CCWWGG | 1 cut(s) | 30 |
| Eco147I | AGGCCT | 1 cut(s) | 35 |
| Eco24I | GRGCYC | 1 cut(s) | 449 |
| Eco52I | CGGCCG | 1 cut(s) | 61 |
| EcoRII | CCWGG | 3 cut(s) | 10, 35, 556 |
| EcoT14I | CCWWGG | 1 cut(s) | 30 |
| EcoT38I | GRGCYC | 1 cut(s) | 449 |
| ErhI | CCWWGG | 1 cut(s) | 30 |
| Esp3I | CGTCTC | 2 cut(s) | 105, 305 |
| FaeI | CATG | 8 cut(s) | 88, 109, 196, 211, 268, 460, 725, 907 |
| FaqI | GGGAC | 2 cut(s) | 104, 362 |
| FatI | CATG | 8 cut(s) | 84, 105, 192, 207, 264, 456, 721, 903 |
| FauI | CCCGC | 2 cut(s) | 491, 823 |
| FblI | GTMKAC | 2 cut(s) | 51, 482 |
| Fnu4HI | GCNGC | 9 cut(s) | 64, 168, 243, 271, 283, 734, 891, 894, 990 |
| FokI | GGATG | 4 cut(s) | 83, 561, 932, 1139 |
| FriOI | GRGCYC | 1 cut(s) | 449 |
| FseI | GGCCGGCC | 1 cut(s) | 10 |
| Fsp4HI | GCNGC | 9 cut(s) | 64, 168, 243, 271, 283, 734, 891, 894, 990 |
| FspBI | CTAG | 1 cut(s) | 1192 |
| GlaI | GCGC | 3 cut(s) | 262, 405, 1114 |
| GluI | GCNGC | 9 cut(s) | 64, 168, 243, 271, 283, 734, 891, 894, 990 |
| GsuI | CTGGAG | 1 cut(s) | 329 |
| HaeII | RGCGCY | 2 cut(s) | 264, 1116 |
| HaeIII | GGCC | 8 cut(s) | 6, 10, 15, 35, 63, 273, 339, 896 |
| HapII | CCGG | 4 cut(s) | 7, 171, 449, 926 |
| HgaI | GACGC | 4 cut(s) | 101, 194, 223, 493 |
| HhaI | GCGC | 3 cut(s) | 263, 406, 1115 |
| Hin1I | GRCGYC | 2 cut(s) | 93, 186 |
| Hin1II | CATG | 8 cut(s) | 88, 109, 196, 211, 268, 460, 725, 907 |
| Hin6I | GCGC | 3 cut(s) | 261, 404, 1113 |
| HinP1I | GCGC | 3 cut(s) | 261, 404, 1113 |
| HincII | GTYRAC | 2 cut(s) | 52, 483 |
| HindII | GTYRAC | 2 cut(s) | 52, 483 |
| HinfI | GANTC | 4 cut(s) | 80, 350, 704, 1088 |
| HpaII | CCGG | 4 cut(s) | 7, 171, 449, 926 |
| HphI | GGTGA | 5 cut(s) | 124, 442, 502, 865, 892 |
| Hpy166II | GTNNAC | 2 cut(s) | 52, 483 |
| Hpy188I | TCNGA | 2 cut(s) | 692, 1036 |
| Hpy188III | TCNNGA | 4 cut(s) | 193, 308, 824, 980 |
| Hpy8I | GTNNAC | 2 cut(s) | 52, 483 |
| Hpy99I | CGWCG | 7 cut(s) | 53, 185, 188, 239, 347, 487, 512 |
| HpyCH4III | ACNGT | 2 cut(s) | 412, 968 |
| HpyCH4IV | ACGT | 1 cut(s) | 197 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 12, 69, 267, 279, 470, 617, 995, 1110 |
| HpyF3I | CTNAG | 2 cut(s) | 257, 1140 |
| HpySE526I | ACGT | 1 cut(s) | 197 |
| Hsp92I | GRCGYC | 2 cut(s) | 93, 186 |
| Hsp92II | CATG | 8 cut(s) | 88, 109, 196, 211, 268, 460, 725, 907 |
| HspAI | GCGC | 3 cut(s) | 261, 404, 1113 |
| KroI | GCCGGC | 1 cut(s) | 6 |
| KroNI | GCCGGC | 1 cut(s) | 8 |
| Kzo9I | GATC | 3 cut(s) | 687, 718, 1074 |
| LguI | GCTCTTC | 1 cut(s) | 1103 |
| LmnI | GCTCC | 5 cut(s) | 107, 258, 324, 444, 973 |
| Lsp1109I | GCAGC | 3 cut(s) | 720, 877, 976 |
| LweI | GCATC | 2 cut(s) | 460, 539 |
| MaeI | CTAG | 1 cut(s) | 1192 |
| MaeII | ACGT | 1 cut(s) | 197 |
| MaeIII | GTNAC | 1 cut(s) | 130 |
| MalI | GATC | 3 cut(s) | 689, 720, 1076 |
| MbiI | CCGCTC | 1 cut(s) | 102 |
| MboI | GATC | 3 cut(s) | 687, 718, 1074 |
| MboII | GAAGA | 4 cut(s) | 67, 868, 1120, 1186 |
| MhlI | GDGCHC | 1 cut(s) | 449 |
| MluCI | AATT | 6 cut(s) | 222, 391, 521, 566, 665, 942 |
| MluI | ACGCGT | 1 cut(s) | 232 |
| MlyI | GAGTC | 2 cut(s) | 74, 344 |
| MmeI | TCCRAC | 2 cut(s) | 1002, 1014 |
| MroNI | GCCGGC | 1 cut(s) | 6 |
| MseI | TTAA | 2 cut(s) | 597, 807 |
| MslI | CAYNNNNRTG | 1 cut(s) | 902 |
| MspI | CCGG | 4 cut(s) | 7, 171, 449, 926 |
| MspR9I | CCNGG | 6 cut(s) | 12, 37, 172, 449, 558, 926 |
| Mva1269I | GAATGC | 1 cut(s) | 622 |
| MvaI | CCWGG | 3 cut(s) | 12, 37, 558 |
| MvnI | CGCG | 2 cut(s) | 234, 825 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 12, 69, 267, 279, 470, 617, 995, 1110 |
| NaeI | GCCGGC | 1 cut(s) | 8 |
| NciI | CCSGG | 3 cut(s) | 172, 449, 926 |
| NdeII | GATC | 3 cut(s) | 687, 718, 1074 |
| NgoMIV | GCCGGC | 1 cut(s) | 6 |
| NlaIII | CATG | 8 cut(s) | 88, 109, 196, 211, 268, 460, 725, 907 |
| NlaIV | GGNNCC | 4 cut(s) | 41, 340, 446, 975 |
| NmeAIII | GCCGAG | 2 cut(s) | 39, 637 |
| NmuCI | GTSAC | 1 cut(s) | 130 |
| NruI | TCGCGA | 1 cut(s) | 825 |
| NspI | RCATGY | 1 cut(s) | 460 |
| NspV | TTCGAA | 1 cut(s) | 290 |
| PagI | TCATGA | 1 cut(s) | 192 |
| PceI | AGGCCT | 1 cut(s) | 35 |
| PciI | ACATGT | 1 cut(s) | 456 |
| PciSI | GCTCTTC | 1 cut(s) | 1103 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 186 |
| PctI | GAATGC | 1 cut(s) | 622 |
| PdiI | GCCGGC | 1 cut(s) | 8 |
| PfeI | GAWTC | 2 cut(s) | 704, 1088 |
| PflFI | GACNNNGTC | 1 cut(s) | 188 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 36 |
| PkrI | GCNGC | 9 cut(s) | 65, 169, 244, 272, 284, 735, 892, 895, 991 |
| PleI | GAGTC | 2 cut(s) | 74, 344 |
| PpsI | GAGTC | 2 cut(s) | 74, 344 |
| PscI | ACATGT | 1 cut(s) | 456 |
| PsiI | TTATAA | 1 cut(s) | 783 |
| Psp6I | CCWGG | 3 cut(s) | 10, 35, 556 |
| PspGI | CCWGG | 3 cut(s) | 10, 35, 556 |
| PspN4I | GGNNCC | 4 cut(s) | 41, 340, 446, 975 |
| PspPI | GGNCC | 3 cut(s) | 4, 14, 338 |
| PsyI | GACNNNGTC | 1 cut(s) | 188 |
| RigI | GGCCGGCC | 1 cut(s) | 10 |
| RruI | TCGCGA | 1 cut(s) | 825 |
| RsaI | GTAC | 1 cut(s) | 218 |
| RsaNI | GTAC | 1 cut(s) | 217 |
| RseI | CAYNNNNRTG | 1 cut(s) | 902 |
| SalI | GTCGAC | 2 cut(s) | 50, 481 |
| SapI | GCTCTTC | 1 cut(s) | 1103 |
| SaqAI | TTAA | 2 cut(s) | 597, 807 |
| SatI | GCNGC | 9 cut(s) | 64, 168, 243, 271, 283, 734, 891, 894, 990 |
| Sau3AI | GATC | 3 cut(s) | 687, 718, 1074 |
| Sau96I | GGNCC | 3 cut(s) | 4, 14, 338 |
| SchI | GAGTC | 2 cut(s) | 74, 344 |
| ScrFI | CCNGG | 6 cut(s) | 12, 37, 172, 449, 558, 926 |
| SduI | GDGCHC | 1 cut(s) | 449 |
| SfaNI | GCATC | 2 cut(s) | 460, 539 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 12 |
| SfuI | TTCGAA | 1 cut(s) | 290 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 902 |
| Sse9I | AATT | 6 cut(s) | 222, 391, 521, 566, 665, 942 |
| SseBI | AGGCCT | 1 cut(s) | 35 |
| SspMI | CTAG | 1 cut(s) | 1192 |
| StuI | AGGCCT | 1 cut(s) | 35 |
| StyD4I | CCNGG | 6 cut(s) | 10, 35, 170, 447, 556, 924 |
| StyI | CCWWGG | 1 cut(s) | 30 |
| TaaI | ACNGT | 2 cut(s) | 412, 968 |
| TaiI | ACGT | 1 cut(s) | 200 |
| TaqI | TCGA | 8 cut(s) | 51, 78, 180, 290, 482, 671, 912, 939 |
| TasI | AATT | 6 cut(s) | 222, 391, 521, 566, 665, 942 |
| TauI | GCSGC | 6 cut(s) | 66, 170, 245, 273, 285, 896 |
| TfiI | GAWTC | 2 cut(s) | 704, 1088 |
| Tru1I | TTAA | 2 cut(s) | 597, 807 |
| Tru9I | TTAA | 2 cut(s) | 597, 807 |
| TseFI | GTSAC | 1 cut(s) | 130 |
| TseI | GCWGC | 3 cut(s) | 733, 890, 989 |
| Tsp45I | GTSAC | 1 cut(s) | 130 |
| TspDTI | ATGAA | 3 cut(s) | 332, 551, 1101 |
| TspGWI | ACGGA | 2 cut(s) | 118, 234 |
| Tth111I | GACNNNGTC | 1 cut(s) | 188 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 36 |
| XapI | RAATTY | 5 cut(s) | 222, 391, 521, 566, 942 |
| XceI | RCATGY | 1 cut(s) | 460 |
| XmiI | GTMKAC | 2 cut(s) | 51, 482 |
| XspI | CTAG | 1 cut(s) | 1192 |