Rroxscaffold_3G00244480

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
37250426 .. 37251694
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00244480.1

Sequence Viewer

Length: 1269 bp
ATGATTATTTACCCGGTCATCGAAGTCCTCCGCCTCTCCTACGACTACCCCTTCTCCGCCGTCAAGTTCTTCCAATGGGCCGGCCTGGCCCACAAGCACTCCCCCAAGGCCTGGAACCTCATCGTCGACCTCCTCGGCCGCAACCGCCTCTTCGACTCCATGTGGGACGCCATCCGCTCCATGCGAGACGAAGCCACTCTCTCCGTCACCACCTTCGCCTTCGCCTTCGCCAACTACTCCGCCGCCGGGAGGTTCGACGACGCCGTCATGACGTTTCAGGTCATGGACAAGTACGGAATTTCGCAACGCGTCGTGGCGGCGAACTCGCTCCTCAGCGCCATGTGCGGCCAAAACGGCGGCGTTTCGAAGGCTCTTGGGTTTCTGGAGACGATGAAGGGGAGCGAGGAGTTCGGCCCCGACGGGGACTCGTTCGCCATTTTGCTGGAAGGTTTGGAGAAGGAAGGGAATTTAGCGAGAGCGCAGACGGTGTTTGGGGAGATGGTGGTGAGAGTTGGGTGGAGCCCGGCGAACATGTCGGCTTACGATGCCTTCTTGTCGACGCTGGTGAGGGGCGGGGAAACCGACGAGGCTGTCAAATTCTTGGGAGTGATGAACAAGAATGGATGCTTGCCAGGTTTGAAATTCTTTTCCAATGCTATTGATATTCTTGTTAAGGAAAAGAGTGCCGAGAATGCTGTATTGGTTTGGGATATTATGGTTGGTAATGGCTTGCTTCCTAAATTGTCGATGTATAATGCGATGATCGGATTGATGTGCGATTCTAATGAGGTGGATCATGCGTTTCGGCTGCTTGATGAGATGGTGTTCAATGGTGCTTTCCCTGATTGTTTTACTTATAATGCTATATTCAAGTGCTTGATTAAGAACAACAAGGTTCGCGAGGCGGGGAAGTTCTTTGTGGAGATGGTGAAGAATGAGTGCCTGCCGACACATTTCAACTTTGCTGCGGCCATCACCATGTTTTTCGATGGGGATGACCCGGAAATGGGGGTCGAAATTTGGAACTTTATGGTTGAGAACCGTGTGGAGCCTCTTGATGTTGCTGCCAATGCGTTGCTTTTGGGTCTTTGTAAGTTGGATAGGTTGTCGGAGTTGAGGAGGAGTGCTGATGATATGCTTGATAGAAGGATCAGCATTTATGAATCAACTATGGCGAGCTTGAAGAGCGCCTACTATAAGGATGGCAGAGGTGCTAAGGATAAATATGATGGTTTGGCAAGGAGGTGGAAGACCTCTTTGGCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

422

Amino Acids

47.11

Weight (kDa)

5.38

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 242 - 275 1.5e-06 PPR repeat
PPR_2 PF13041 248 - 295 1.5e-12 PPR repeat family
PPR_2 PF13041 281 - 320 2.6e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
AasI GACNNNNNNGTC 2 cut(s) 263, 590
AccB7I CCANNNNNTGG 1 cut(s) 111
AccBSI CCGCTC 1 cut(s) 177
AccI GTMKAC 2 cut(s) 126, 557
AccII CGCG 2 cut(s) 309, 900
AclWI GGATC 2 cut(s) 801, 1157
AcoI YGGCCR 3 cut(s) 136, 346, 969
AcsI RAATTY 5 cut(s) 297, 466, 596, 641, 1017
AcyI GRCGYC 2 cut(s) 168, 261
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 6 cut(s) 111, 246, 249, 421, 1006, 1007
AflIII ACRYGT 2 cut(s) 307, 531
AgsI TTSAA 5 cut(s) 640, 829, 871, 958, 1183
AjnI CCWGG 3 cut(s) 84, 110, 631
AjuI GAANNNNNNNTTGG 3 cut(s) 683, 715, 1241
AluBI AGCT 1 cut(s) 1179
AluI AGCT 1 cut(s) 1179
Alw26I GTCTC 2 cut(s) 180, 380
AlwI GGATC 2 cut(s) 801, 1157
AoxI GGCC 8 cut(s) 78, 82, 87, 108, 136, 346, 412, 969
ApeKI GCWGC 3 cut(s) 808, 965, 1064
ApoI RAATTY 5 cut(s) 297, 466, 596, 641, 1017
AspLEI GCGC 3 cut(s) 338, 481, 1190
AspS9I GGNCC 3 cut(s) 78, 88, 413
AsuC2I CCSGG 4 cut(s) 14, 247, 524, 1001
AsuHPI GGTGA 5 cut(s) 199, 517, 577, 940, 967
AsuII TTCGAA 1 cut(s) 365
BanII GRGCYC 1 cut(s) 524
BarI GAAGNNNNNNTAC 2 cut(s) 1175, 1207
BbsI GAAGAC 1 cut(s) 1256
BbvCI CCTCAGC 1 cut(s) 332
BbvI GCAGC 3 cut(s) 795, 952, 1051
BccI CCATC 8 cut(s) 179, 493, 814, 919, 980, 983, 1196, 1223
BceAI ACGGC 3 cut(s) 44, 248, 370
BciT130I CCWGG 3 cut(s) 86, 112, 633
BcnI CCSGG 4 cut(s) 14, 247, 524, 1001
BcoDI GTCTC 2 cut(s) 180, 380
BfaI CTAG 1 cut(s) 1267
BfoI RGCGCY 2 cut(s) 339, 1191
BglI GCCNNNNNGGC 2 cut(s) 86, 354
BisI GCNGC 9 cut(s) 139, 243, 318, 346, 358, 809, 966, 969, 1065
BlsI GCNGC 9 cut(s) 140, 244, 319, 347, 359, 810, 967, 970, 1066
Bme1390I CCNGG 7 cut(s) 14, 86, 112, 247, 524, 633, 1001
BmgT120I GGNCC 3 cut(s) 78, 88, 413
BmiI GGNNCC 4 cut(s) 116, 415, 521, 1050
BmrFI CCNGG 7 cut(s) 14, 86, 112, 247, 524, 633, 1001
BmsI GCATC 2 cut(s) 535, 614
BpiI GAAGAC 1 cut(s) 1256
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 2 cut(s) 332, 1215
Bpu14I TTCGAA 1 cut(s) 365
BpuMI CCSGG 4 cut(s) 14, 247, 524, 1001
BsaHI GRCGYC 2 cut(s) 168, 261
BsaJI CCNNGG 2 cut(s) 105, 133
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 83, 113
Bsc4I CCNNNNNNNGG 6 cut(s) 111, 246, 249, 421, 1006, 1007
Bse118I RCCGGY 1 cut(s) 80
BseBI CCWGG 3 cut(s) 86, 112, 633
BseDI CCNNGG 2 cut(s) 105, 133
BseGI GGATG 4 cut(s) 171, 629, 1000, 1207
BseLI CCNNNNNNNGG 6 cut(s) 111, 246, 249, 421, 1006, 1007
BseMII CTCAG 1 cut(s) 346
BseRI GAGGAG 5 cut(s) 122, 320, 419, 1132, 1135
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 3 cut(s) 795, 952, 1051
Bsh1236I CGCG 2 cut(s) 309, 900
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 8 cut(s) 80, 84, 89, 110, 138, 348, 414, 971
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 5 cut(s) 14, 81, 246, 524, 1001
BslFI GGGAC 2 cut(s) 179, 437
BslI CCNNNNNNNGG 6 cut(s) 111, 246, 249, 421, 1006, 1007
BsmAI GTCTC 2 cut(s) 180, 380
BsmBI CGTCTC 2 cut(s) 180, 380
BsmFI GGGAC 2 cut(s) 179, 437
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 8 cut(s) 80, 84, 89, 110, 138, 348, 414, 971
Bsp119I TTCGAA 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 3 cut(s) 762, 793, 1149
Bsp68I TCGCGA 1 cut(s) 900
BspANI GGCC 8 cut(s) 80, 84, 89, 110, 138, 348, 414, 971
BspCNI CTCAG 1 cut(s) 345
BspFNI CGCG 2 cut(s) 309, 900
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 4 cut(s) 116, 415, 521, 1050
BspPI GGATC 2 cut(s) 801, 1157
BspQI GCTCTTC 1 cut(s) 1178
BspT104I TTCGAA 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 105, 133
BssMI GATC 3 cut(s) 762, 793, 1149
BssNI GRCGYC 2 cut(s) 168, 261
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 3 cut(s) 86, 112, 633
Bst4CI ACNGT 2 cut(s) 487, 1043
Bst6I CTCTTC 2 cut(s) 155, 1178
BstACI GRCGYC 2 cut(s) 168, 261
BstBI TTCGAA 1 cut(s) 365
BstC8I GCNNGC 6 cut(s) 82, 629, 731, 944, 1177, 1264
BstDEI CTNAG 2 cut(s) 332, 1215
BstF5I GGATG 4 cut(s) 171, 629, 1000, 1207
BstFNI CGCG 2 cut(s) 309, 900
BstH2I RGCGCY 2 cut(s) 339, 1191
BstHHI GCGC 3 cut(s) 338, 481, 1190
BstKTI GATC 3 cut(s) 765, 796, 1152
BstMAI GTCTC 2 cut(s) 180, 380
BstMBI GATC 3 cut(s) 762, 793, 1149
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 8 cut(s) 86, 144, 342, 354, 545, 692, 1070, 1185
BstNI CCWGG 3 cut(s) 86, 112, 633
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 7 cut(s) 12, 84, 110, 245, 522, 631, 999
BstUI CGCG 2 cut(s) 309, 900
BstV1I GCAGC 3 cut(s) 795, 952, 1051
BstV2I GAAGAC 1 cut(s) 1256
BstXI CCANNNNNNTGG 1 cut(s) 442
BstZI CGGCCG 1 cut(s) 136
BsuRI GGCC 8 cut(s) 80, 84, 89, 110, 138, 348, 414, 971
BtgZI GCGATG 1 cut(s) 773
BtsCI GGATG 4 cut(s) 171, 629, 1000, 1207
BtuMI TCGCGA 1 cut(s) 900
Cac8I GCNNGC 6 cut(s) 82, 629, 731, 944, 1177, 1264
CciI TCATGA 1 cut(s) 267
CfoI GCGC 3 cut(s) 338, 481, 1190
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 3 cut(s) 78, 88, 413
CseI GACGC 4 cut(s) 176, 269, 298, 568
Csp6I GTAC 1 cut(s) 292
CviAII CATG 8 cut(s) 160, 181, 268, 283, 340, 532, 797, 979
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 332, 1215
DpnI GATC 3 cut(s) 764, 795, 1151
DpnII GATC 3 cut(s) 762, 793, 1149
DrdI GACNNNNNNGTC 2 cut(s) 263, 590
DseDI GACNNNNNNGTC 2 cut(s) 263, 590
EaeI YGGCCR 3 cut(s) 136, 346, 969
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 155, 1178
EarI CTCTTC 2 cut(s) 155, 1178
EciI GGCGGA 3 cut(s) 20, 46, 229
EclXI CGGCCG 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 105
Eco147I AGGCCT 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 524
Eco52I CGGCCG 1 cut(s) 136
EcoRII CCWGG 3 cut(s) 84, 110, 631
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 2 cut(s) 180, 380
FaeI CATG 8 cut(s) 163, 184, 271, 286, 343, 535, 800, 982
FaqI GGGAC 2 cut(s) 179, 437
FatI CATG 8 cut(s) 159, 180, 267, 282, 339, 531, 796, 978
FauI CCCGC 2 cut(s) 566, 898
FblI GTMKAC 2 cut(s) 126, 557
Fnu4HI GCNGC 9 cut(s) 139, 243, 318, 346, 358, 809, 966, 969, 1065
FokI GGATG 4 cut(s) 158, 636, 1007, 1214
FriOI GRGCYC 1 cut(s) 524
FseI GGCCGGCC 1 cut(s) 84
Fsp4HI GCNGC 9 cut(s) 139, 243, 318, 346, 358, 809, 966, 969, 1065
FspBI CTAG 1 cut(s) 1267
GlaI GCGC 3 cut(s) 337, 480, 1189
GluI GCNGC 9 cut(s) 139, 243, 318, 346, 358, 809, 966, 969, 1065
GsuI CTGGAG 1 cut(s) 404
HaeII RGCGCY 2 cut(s) 339, 1191
HaeIII GGCC 8 cut(s) 80, 84, 89, 110, 138, 348, 414, 971
HapII CCGG 5 cut(s) 14, 81, 246, 524, 1001
HgaI GACGC 4 cut(s) 176, 269, 298, 568
HhaI GCGC 3 cut(s) 338, 481, 1190
Hin1I GRCGYC 2 cut(s) 168, 261
Hin1II CATG 8 cut(s) 163, 184, 271, 286, 343, 535, 800, 982
Hin6I GCGC 3 cut(s) 336, 479, 1188
HinP1I GCGC 3 cut(s) 336, 479, 1188
HincII GTYRAC 2 cut(s) 127, 558
HindII GTYRAC 2 cut(s) 127, 558
HinfI GANTC 4 cut(s) 155, 425, 779, 1163
HpaII CCGG 5 cut(s) 14, 81, 246, 524, 1001
HphI GGTGA 5 cut(s) 199, 517, 577, 940, 967
Hpy166II GTNNAC 2 cut(s) 127, 558
Hpy188I TCNGA 2 cut(s) 767, 1111
Hpy188III TCNNGA 4 cut(s) 268, 383, 899, 1055
Hpy8I GTNNAC 2 cut(s) 127, 558
Hpy99I CGWCG 7 cut(s) 128, 260, 263, 314, 422, 562, 587
HpyCH4III ACNGT 2 cut(s) 487, 1043
HpyCH4IV ACGT 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 144, 342, 354, 545, 692, 1070, 1185
HpyF3I CTNAG 2 cut(s) 332, 1215
HpySE526I ACGT 1 cut(s) 272
Hsp92I GRCGYC 2 cut(s) 168, 261
Hsp92II CATG 8 cut(s) 163, 184, 271, 286, 343, 535, 800, 982
HspAI GCGC 3 cut(s) 336, 479, 1188
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 3 cut(s) 762, 793, 1149
LguI GCTCTTC 1 cut(s) 1178
LmnI GCTCC 5 cut(s) 182, 333, 399, 519, 1048
Lsp1109I GCAGC 3 cut(s) 795, 952, 1051
LweI GCATC 2 cut(s) 535, 614
MaeI CTAG 1 cut(s) 1267
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 205
MalI GATC 3 cut(s) 764, 795, 1151
MbiI CCGCTC 1 cut(s) 177
MboI GATC 3 cut(s) 762, 793, 1149
MboII GAAGA 5 cut(s) 61, 142, 943, 1195, 1261
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 6 cut(s) 297, 466, 596, 641, 740, 1017
MluI ACGCGT 1 cut(s) 307
MlyI GAGTC 2 cut(s) 149, 419
MmeI TCCRAC 2 cut(s) 1077, 1089
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 2 cut(s) 672, 882
MslI CAYNNNNRTG 1 cut(s) 977
MspI CCGG 5 cut(s) 14, 81, 246, 524, 1001
MspR9I CCNGG 7 cut(s) 14, 86, 112, 247, 524, 633, 1001
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 3 cut(s) 86, 112, 633
MvnI CGCG 2 cut(s) 309, 900
MwoI GCNNNNNNNGC 8 cut(s) 86, 144, 342, 354, 545, 692, 1070, 1185
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 4 cut(s) 14, 247, 524, 1001
NdeII GATC 3 cut(s) 762, 793, 1149
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 8 cut(s) 163, 184, 271, 286, 343, 535, 800, 982
NlaIV GGNNCC 4 cut(s) 116, 415, 521, 1050
NmeAIII GCCGAG 2 cut(s) 114, 712
NmuCI GTSAC 1 cut(s) 205
NruI TCGCGA 1 cut(s) 900
NspI RCATGY 1 cut(s) 535
NspV TTCGAA 1 cut(s) 365
PagI TCATGA 1 cut(s) 267
PceI AGGCCT 1 cut(s) 110
PciI ACATGT 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 1178
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 1 cut(s) 697
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 779, 1163
PflFI GACNNNGTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 9 cut(s) 140, 244, 319, 347, 359, 810, 967, 970, 1066
PleI GAGTC 2 cut(s) 149, 419
PpsI GAGTC 2 cut(s) 149, 419
PscI ACATGT 1 cut(s) 531
PsiI TTATAA 1 cut(s) 858
Psp6I CCWGG 3 cut(s) 84, 110, 631
PspGI CCWGG 3 cut(s) 84, 110, 631
PspN4I GGNNCC 4 cut(s) 116, 415, 521, 1050
PspPI GGNCC 3 cut(s) 78, 88, 413
PsyI GACNNNGTC 1 cut(s) 263
RigI GGCCGGCC 1 cut(s) 84
RruI TCGCGA 1 cut(s) 900
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 977
SalI GTCGAC 2 cut(s) 125, 556
SapI GCTCTTC 1 cut(s) 1178
SaqAI TTAA 2 cut(s) 672, 882
SatI GCNGC 9 cut(s) 139, 243, 318, 346, 358, 809, 966, 969, 1065
Sau3AI GATC 3 cut(s) 762, 793, 1149
Sau96I GGNCC 3 cut(s) 78, 88, 413
SchI GAGTC 2 cut(s) 149, 419
ScrFI CCNGG 7 cut(s) 14, 86, 112, 247, 524, 633, 1001
SduI GDGCHC 1 cut(s) 524
SfaNI GCATC 2 cut(s) 535, 614
SfiI GGCCNNNNNGGCC 1 cut(s) 86
SfuI TTCGAA 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 977
Sse9I AATT 6 cut(s) 297, 466, 596, 641, 740, 1017
SseBI AGGCCT 1 cut(s) 110
SspMI CTAG 1 cut(s) 1267
StuI AGGCCT 1 cut(s) 110
StyD4I CCNGG 7 cut(s) 12, 84, 110, 245, 522, 631, 999
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 487, 1043
TaiI ACGT 1 cut(s) 275
TaqI TCGA 9 cut(s) 21, 126, 153, 255, 365, 557, 746, 987, 1014
TasI AATT 6 cut(s) 297, 466, 596, 641, 740, 1017
TauI GCSGC 6 cut(s) 141, 245, 320, 348, 360, 971
TfiI GAWTC 2 cut(s) 779, 1163
Tru1I TTAA 2 cut(s) 672, 882
Tru9I TTAA 2 cut(s) 672, 882
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 3 cut(s) 808, 965, 1064
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 407, 626, 1176
TspGWI ACGGA 2 cut(s) 193, 309
Tth111I GACNNNGTC 1 cut(s) 263
Van91I CCANNNNNTGG 1 cut(s) 111
XapI RAATTY 5 cut(s) 297, 466, 596, 641, 1017
XceI RCATGY 1 cut(s) 535
XmiI GTMKAC 2 cut(s) 126, 557
XspI CTAG 1 cut(s) 1267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.