Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0018046

Physical Location & Seq

Genomic Coordinates Forward (+)

16956606 .. 16957252

Gene Structure 647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGACTCAACAATATAATCAAGAGTCGATTAGGAGAATAAATTGCTACCATACTATCTGTGATCAAGCATTTAGAGTCTCCACTCTCCAGAGAGCCTTGAAAATTGAGGTGGGTGAAAGGCAGATAGCCGTGCACAAGACTGCCACAATGAAGATGGAAATGGGAGCTAATGATGATGAGAAGATGAGAATCTACGAGAGAGCACGAATGGCTGTTGAGGCTGTTGAGGCTTGTGACATGGAACTTCTGGACAAGACTAGGAAATATGAAGAACTAATGCTGGAGAAGCACAAAAAGATTATGCAAATTCAACAGCTGGAGAAGATTATGAGGCTCAAACTTGCAGAAGCTGATATGTTCCAGCTCAAGGCCAATGAGGCGAAACAAGAGGTGCTGAGGCTCCAGAGGATTGCTATTGTGTCGGAAGAAGAATATGGTAACAGTTACCTGAGACATCGATTGAGAGAGGCCGAGGCAGAGAAGCAATATCTAATCGAAAAGATTAGACTCAAAGGTCATTCAAAGGCATTCAACAACTGTGATGGTCATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0007275 GO:0008150 GO:0009536 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010015 GO:0010071 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010468 GO:0010492 GO:0016032 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031347 GO:0032501 GO:0032502 GO:0040011 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046740 GO:0046794 GO:0046982 GO:0046983 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080134 GO:0090421 GO:0098727 GO:0099402 GO:1902579 GO:1902586 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

185

Amino Acids

21.8

Weight (kDa)

8.59

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oberon_cc	PF16312	71 - 175	1.7e-27	Coiled-coil region of Oberon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25480 FvH4_7g06700
rosa_chinensis	RchiOBHm_Chr7g0215721
rosa_laevigata	RLG00000002631
rosa_multiflora	Rmu_co8284905.1_g000001 Rmu_sc0000898.1_g000017
rosa_roxburghii	Rroxscaffold_3G00243900
rosa_samantha	Rh7AG293300 Rh7BG285600 Rh7CG313400 Rh7DG296600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	4 cut(s)	100, 311, 522, 532
AluBI	AGCT	4 cut(s)	167, 316, 350, 364
AluI	AGCT	4 cut(s)	167, 316, 350, 364
Alw21I	GWGCWC	2 cut(s)	135, 205
Alw26I	GTCTC	2 cut(s)	82, 445
Alw44I	GTGCAC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	369, 468
ApaLI	GTGCAC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	135, 205
BbvCI	CCTCAGC	1 cut(s)	395
BccI	CCATC	2 cut(s)	148, 536
BceAI	ACGGC	1 cut(s)	113
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	82, 445
BfaI	CTAG	1 cut(s)	258
BglI	GCCNNNNNGGC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	401
BpmI	CTGGAG	4 cut(s)	71, 302, 338, 386
Bpu10I	CCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	471
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	386, 440
BseSI	GKGCMC	1 cut(s)	135
BshFI	GGCC	2 cut(s)	371, 470
BshVI	ATCGAT	1 cut(s)	457
BsiHKAI	GWGCWC	2 cut(s)	135, 205
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	2 cut(s)	82, 445
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	371, 470
Bsp1286I	GDGCHC	2 cut(s)	135, 205
Bsp143I	GATC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	371, 470
BspCNI	CTCAG	2 cut(s)	387, 441
BspDI	ATCGAT	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	443, 539
BstDEI	CTNAG	2 cut(s)	395, 449
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	82, 445
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 218, 227, 286, 377
BstSLI	GKGCMC	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	371, 470
BsuTUI	ATCGAT	1 cut(s)	457
CaiI	CAGNNNCTG	1 cut(s)	350
ClaI	ATCGAT	1 cut(s)	457
CviAII	CATG	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	395, 449
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
DrdI	GACNNNNNNGTC	1 cut(s)	513
DseDI	GACNNNNNNGTC	1 cut(s)	513
FaeI	CATG	1 cut(s)	241
FaiI	YATR	8 cut(s)	15, 51, 239, 267, 302, 329, 356, 435
FatI	CATG	1 cut(s)	237
FbaI	TGATCA	1 cut(s)	61
FspBI	CTAG	1 cut(s)	258
GsuI	CTGGAG	4 cut(s)	71, 302, 338, 386
HaeIII	GGCC	2 cut(s)	371, 470
Hin1II	CATG	1 cut(s)	241
HinfI	GANTC	5 cut(s)	4, 23, 75, 189, 507
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	20, 88, 248, 403
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	443, 539
HpyCH4V	TGCA	3 cut(s)	133, 304, 344
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 218, 227, 286, 377
HpyF3I	CTNAG	2 cut(s)	395, 449
Hsp92II	CATG	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	164, 405
LpnPI	CCDG	7 cut(s)	101, 233, 266, 302, 374, 416, 461
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	3 cut(s)	233, 437, 443
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	6 cut(s)	163, 193, 281, 334, 437, 440
MhlI	GDGCHC	2 cut(s)	135, 205
MluCI	AATT	3 cut(s)	40, 102, 306
MlyI	GAGTC	3 cut(s)	32, 84, 501
MmeI	TCCRAC	1 cut(s)	402
MseI	TTAA	1 cut(s)	553
MspA1I	CMGCKG	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	527
MwoI	GCNNNNNNNGC	5 cut(s)	209, 218, 227, 286, 377
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	401
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	189
PleI	GAGTC	3 cut(s)	31, 83, 501
PpsI	GAGTC	3 cut(s)	31, 83, 501
PspN4I	GGNNCC	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	553
Sau3AI	GATC	1 cut(s)	61
SchI	GAGTC	3 cut(s)	32, 84, 501
SduI	GDGCHC	2 cut(s)	135, 205
SetI	ASST	8 cut(s)	111, 169, 318, 352, 366, 393, 450, 517
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	3 cut(s)	40, 102, 306
SspMI	CTAG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	443, 539
TaqI	TCGA	3 cut(s)	26, 457, 495
TasI	AATT	3 cut(s)	40, 102, 306
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	553
Tru9I	TTAA	1 cut(s)	553
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	164, 282
VneI	GTGCAC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.