Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018046

Physical Location & Seq

Genomic Coordinates Reverse (-)

36367118 .. 36367561

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATCAACCGTTCAATGTTTCCTCAAGAGCTTGAGCCTCATGTAGAGTCTCCAAAGATCCTTGAAAATGAGGTGGGTGAACAGCTGATGGCCCCGCAAAAGATTGCCACAGTGAAGATGCAAATGGTAGCTGATGATGATGAGAAGATGAGAATGTACGAGAGAGCACGAATGGCTGTTAAGGCTTGTGACAGGGAACTTCTGGAAAAGACCAGGAAATATGAAGAACTAATGCTGGAGAAGCACAAAAAGAAGATGCAAGTCCAACAGCTGGAGAAGATTGTGAGGCTTAAACTTGCAGAGGCTGATATGTTCCAACTCAAGGCCAATGAGGCAAAACAAGAGGTGCTGAGGCTCCAGAAGATTGCTCTTGTGTTGGAAGAAGAATATGCTAACAGCTACCTGAAACAACAATTGAGGGAAGCCGCGGCAGAGAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0007275 GO:0008150 GO:0009536 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010015 GO:0010071 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010468 GO:0010492 GO:0016032 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031347 GO:0032501 GO:0032502 GO:0040011 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046740 GO:0046794 GO:0046982 GO:0046983 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080134 GO:0090421 GO:0098727 GO:0099402 GO:1902579 GO:1902586 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

147

Amino Acids

17.39

Weight (kDa)

6.77

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oberon_cc	PF16312	54 - 147	2e-25	Coiled-coil region of Oberon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25480 FvH4_7g06700
rosa_chinensis	RchiOBHm_Chr7g0215721
rosa_laevigata	RLG00000002631
rosa_multiflora	Rmu_co8284905.1_g000001 Rmu_sc0000898.1_g000017
rosa_roxburghii	Rroxscaffold_3G00243900
rosa_samantha	Rh7AG293300 Rh7BG285600 Rh7CG313400 Rh7DG296600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccII	CGCG	1 cut(s)	428
AciI	CCGC	3 cut(s)	95, 426, 428
AclWI	GGATC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	271, 322
AgsI	TTSAA	2 cut(s)	15, 65
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	5 cut(s)	31, 85, 131, 271, 399
AluI	AGCT	5 cut(s)	31, 85, 131, 271, 399
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	2 cut(s)	90, 324
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	169
BbvCI	CCTCAGC	1 cut(s)	350
BccI	CCATC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	214
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	54
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	2 cut(s)	426, 429
BlsI	GCNGC	2 cut(s)	427, 430
Bme1390I	CCNGG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	93, 356
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	108, 246
BpmI	CTGGAG	3 cut(s)	257, 293, 341
Bpu10I	CCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	3 cut(s)	9, 53, 305
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 322
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	271, 322
BseMII	CTCAG	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	92, 326
BsiHKAI	GWGCWC	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	271, 322
BsmAI	GTCTC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	92, 326
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	3, 57
BspACI	CCGC	3 cut(s)	95, 426, 428
BspANI	GGCC	2 cut(s)	92, 326
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	2 cut(s)	93, 356
BspPI	GGATC	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	2 cut(s)	3, 57
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	11, 112
BstDEI	CTNAG	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	426
BstFNI	CGCG	1 cut(s)	428
BstKTI	GATC	2 cut(s)	6, 60
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	2 cut(s)	3, 57
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 182, 241, 332
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstUI	CGCG	1 cut(s)	428
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	92, 326
BtgI	CCRYGG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	91
Cfr42I	CCGCGG	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	41
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	2 cut(s)	5, 59
DpnII	GATC	2 cut(s)	3, 57
EcoRII	CCWGG	1 cut(s)	212
FaeI	CATG	1 cut(s)	44
FaiI	YATR	4 cut(s)	42, 222, 311, 390
FatI	CATG	1 cut(s)	40
FauI	CCCGC	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	426, 429
Fsp4HI	GCNGC	2 cut(s)	426, 429
GluI	GCNGC	2 cut(s)	426, 429
GsuI	CTGGAG	3 cut(s)	257, 293, 341
HaeIII	GGCC	2 cut(s)	92, 326
Hin1II	CATG	1 cut(s)	44
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188III	TCNNGA	3 cut(s)	26, 203, 358
Hpy8I	GTNNAC	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	11, 112
HpyCH4V	TGCA	3 cut(s)	121, 259, 299
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 182, 241, 332
HpyF3I	CTNAG	1 cut(s)	350
Hsp92II	CATG	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	3, 57
LmnI	GCTCC	1 cut(s)	360
LpnPI	CCDG	8 cut(s)	178, 188, 199, 221, 226, 257, 371, 416
LweI	GCATC	2 cut(s)	108, 246
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	5, 59
MboI	GATC	2 cut(s)	3, 57
MboII	GAAGA	8 cut(s)	127, 157, 236, 265, 289, 373, 392, 395
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	3 cut(s)	289, 340, 357
MnlI	CCTC	9 cut(s)	33, 48, 64, 279, 295, 325, 337, 345, 411
MseI	TTAA	2 cut(s)	180, 291
MspA1I	CMGCKG	3 cut(s)	85, 271, 428
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	4 cut(s)	173, 182, 241, 332
NdeII	GATC	2 cut(s)	3, 57
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	2 cut(s)	93, 356
NmuCI	GTSAC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	427, 430
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	93, 356
PspPI	GGNCC	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	57
PvuII	CAGCTG	2 cut(s)	85, 271
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacII	CCGCGG	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	180, 291
SatI	GCNGC	2 cut(s)	426, 429
Sau3AI	GATC	2 cut(s)	3, 57
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	8 cut(s)	33, 75, 87, 133, 273, 348, 401, 405
SfaNI	GCATC	2 cut(s)	108, 246
Sfr303I	CCGCGG	1 cut(s)	429
SgrBI	CCGCGG	1 cut(s)	429
SmlI	CTYRAG	3 cut(s)	24, 32, 320
SmoI	CTYRAG	3 cut(s)	24, 32, 320
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	3 cut(s)	95, 426, 428
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	11, 112
TasI	AATT	1 cut(s)	413
TauI	GCSGC	2 cut(s)	428, 431
Tru1I	TTAA	2 cut(s)	180, 291
Tru9I	TTAA	2 cut(s)	180, 291
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	117
Van91I	CCANNNNNTGG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.