Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0018046

Physical Location & Seq

Genomic Coordinates Reverse (-)

78365 .. 78889

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000898.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgaggtgggtgaaccgtgaacagctgatggccccgcaaaagattgccacagtgaagatggaaatggtagctgatgatgatgagaagatgagaatgtacgagagagcacgaatggctgttgaggcttgtgacagggaaattctggaaaagaccaggaaatatgaagaactaatgctggagaagcacaaaaagaagatgcaagtccaacagctggagaagattgtgaggcttaaacttgcagaggctgatatgttccaactcaaggccaatgaggcaaaacaagaggtgctgaggctccagaagattgctcttgtgtcggaagaagaatatgctaacagctacctgaaacaacaattgagggaagccgcggtagagaagcagtatctaattgagaagattagacttgaagaacattcacaggcatccaacaactgtggtggtggtggtcctgctcacacattgattcattcgaaaatggatgatctgctttatggtgacactcctaagacggagtttaattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0007275 GO:0008150 GO:0009536 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010015 GO:0010071 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010468 GO:0010492 GO:0016032 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031347 GO:0032501 GO:0032502 GO:0040011 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046740 GO:0046794 GO:0046982 GO:0046983 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080134 GO:0090421 GO:0098727 GO:0099402 GO:1902579 GO:1902586 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

174

Amino Acids

20.5

Weight (kDa)

6.46

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25480 FvH4_7g06700
rosa_chinensis	RchiOBHm_Chr7g0215721
rosa_laevigata	RLG00000002631
rosa_multiflora	Rmu_co8284905.1_g000001 Rmu_sc0000898.1_g000017
rosa_roxburghii	Rroxscaffold_3G00243900
rosa_samantha	Rh7AG293300 Rh7BG285600 Rh7CG313400 Rh7DG296600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccII	CGCG	1 cut(s)	368
AciI	CCGC	3 cut(s)	35, 366, 368
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	211, 262
AgsI	TTSAA	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	4 cut(s)	25, 71, 211, 339
AluI	AGCT	4 cut(s)	25, 71, 211, 339
Alw21I	GWGCWC	1 cut(s)	109
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	30, 264
ApoI	RAATTY	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	31, 446
AsuHPI	GGTGA	2 cut(s)	22, 506
AsuII	TTCGAA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	290
BccI	CCATC	2 cut(s)	22, 52
BciT130I	CCWGG	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	31, 446
BmiI	GGNNCC	2 cut(s)	33, 296
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	2 cut(s)	186, 431
BpmI	CTGGAG	3 cut(s)	197, 233, 281
Bpu10I	CCTNAGC	1 cut(s)	290
Bpu14I	TTCGAA	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 262
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	422, 484
BseLI	CCNNNNNNNGG	2 cut(s)	211, 262
BseMII	CTCAG	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	368
BshFI	GGCC	2 cut(s)	32, 266
BsiHKAI	GWGCWC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	211, 262
BsnI	GGCC	2 cut(s)	32, 266
Bsp119I	TTCGAA	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	3 cut(s)	35, 366, 368
BspANI	GGCC	2 cut(s)	32, 266
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	368
BspLI	GGNNCC	2 cut(s)	33, 296
BspT104I	TTCGAA	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	3 cut(s)	17, 52, 434
BstBI	TTCGAA	1 cut(s)	470
BstDEI	CTNAG	2 cut(s)	290, 504
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	422, 484
BstFNI	CGCG	1 cut(s)	368
BstKTI	GATC	1 cut(s)	484
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 122, 181, 272
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstUI	CGCG	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	32, 266
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	422, 484
BtsIMutI	CAGTG	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	31, 446
Cfr42I	CCGCGG	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	97
CspCI	CAANNNNNGTGG	4 cut(s)	415, 418, 450, 453
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	290, 504
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	152
FaiI	YATR	4 cut(s)	162, 251, 330, 492
FauI	CCCGC	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	2 cut(s)	409, 491
Fsp4HI	GCNGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	366
GsuI	CTGGAG	3 cut(s)	197, 233, 281
HaeIII	GGCC	2 cut(s)	32, 266
HinfI	GANTC	1 cut(s)	463
HphI	GGTGA	2 cut(s)	22, 506
Hpy166II	GTNNAC	2 cut(s)	13, 20
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	2 cut(s)	143, 298
Hpy8I	GTNNAC	2 cut(s)	13, 20
HpyCH4III	ACNGT	3 cut(s)	17, 52, 434
HpyCH4V	TGCA	2 cut(s)	199, 239
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 122, 181, 272
HpyF3I	CTNAG	2 cut(s)	290, 504
KspI	CCGCGG	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	1 cut(s)	300
LweI	GCATC	2 cut(s)	186, 431
MaeIII	GTNAC	2 cut(s)	128, 494
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MfeI	CAATTG	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	4 cut(s)	138, 353, 387, 517
MmeI	TCCRAC	4 cut(s)	229, 280, 297, 450
MnlI	CCTC	7 cut(s)	115, 219, 235, 265, 277, 285, 351
MseI	TTAA	2 cut(s)	231, 516
MspA1I	CMGCKG	3 cut(s)	25, 211, 368
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	4 cut(s)	113, 122, 181, 272
NdeII	GATC	1 cut(s)	481
NlaIV	GGNNCC	2 cut(s)	33, 296
NmuCI	GTSAC	2 cut(s)	128, 494
NspV	TTCGAA	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	463
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	33, 296
PspPI	GGNCC	2 cut(s)	31, 446
PstNI	CAGNNNCTG	1 cut(s)	245
PvuII	CAGCTG	2 cut(s)	25, 211
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacII	CCGCGG	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	231, 516
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	2 cut(s)	31, 446
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	7 cut(s)	8, 27, 73, 213, 288, 341, 345
SfaNI	GCATC	2 cut(s)	186, 431
Sfr303I	CCGCGG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	470
SgrBI	CCGCGG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	4 cut(s)	138, 353, 387, 517
SsiI	CCGC	3 cut(s)	35, 366, 368
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	17, 52, 434
TaqI	TCGA	1 cut(s)	470
TasI	AATT	4 cut(s)	138, 353, 387, 517
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	231, 516
Tru9I	TTAA	2 cut(s)	231, 516
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	2 cut(s)	128, 494
Tsp45I	GTSAC	2 cut(s)	128, 494
TspDTI	ATGAA	2 cut(s)	177, 455
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	1 cut(s)	57
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.