Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0018046

Physical Location & Seq

Genomic Coordinates Reverse (-)

6755699 .. 6756704

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCTATTAAGGCTTGTGACATGGAACTTCTTGACAAGACCAGGAAATATGAAGAACTAATGCTGGAGAAGCACAAAAAAATTATGCAAATTCAACAGCTAGAGAAGATTGTGAGGCTCAAATTTGCAGAAGCTGACATGTTCCAGCTCAAGGCCAATGAGGCGAAACCAGAGGTGCTGAGGCTCCAGAGGGTTGTTATTGTGTCGGAAGAAGAATATGCTAACAGTTACCTAAGACAGCAATTGAGGGAGACCGAGGCAGAGAAACAGTATCTAATCGAAAAGATTAGACTCGAAGATCATTCAAAGGCATCCAACAACTGTGATGTATTGATCGATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0007275 GO:0008150 GO:0009536 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010015 GO:0010071 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010468 GO:0010492 GO:0016032 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031347 GO:0032501 GO:0032502 GO:0040011 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046740 GO:0046794 GO:0046982 GO:0046983 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080134 GO:0090421 GO:0098727 GO:0099402 GO:1902579 GO:1902586 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

115

Amino Acids

13.57

Weight (kDa)

5.78

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oberon_cc	PF16312	2 - 105	4.7e-29	Coiled-coil region of Oberon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25480 FvH4_7g06700
rosa_chinensis	RchiOBHm_Chr7g0215721
rosa_laevigata	RLG00000002631
rosa_multiflora	Rmu_co8284905.1_g000001 Rmu_sc0000898.1_g000017
rosa_roxburghii	Rroxscaffold_3G00243900
rosa_samantha	Rh7AG293300 Rh7BG285600 Rh7CG313400 Rh7DG296600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	90, 122
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	95, 306
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	3 cut(s)	100, 134, 148
AluI	AGCT	3 cut(s)	100, 134, 148
Alw26I	GTCTC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	90, 122
BbvCI	CCTCAGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	101
BglI	GCCNNNNNGGC	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	320
BpmI	CTGGAG	2 cut(s)	86, 170
Bpu10I	CCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	43
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	298, 333
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	171
BspDI	ATCGAT	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	298, 333
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	3 cut(s)	227, 270, 323
BstDEI	CTNAG	2 cut(s)	179, 233
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	2 cut(s)	301, 336
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	298, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 70, 161
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	155
BsuTUI	ATCGAT	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	311
CaiI	CAGNNNCTG	1 cut(s)	134
ClaI	ATCGAT	1 cut(s)	336
CviAII	CATG	2 cut(s)	22, 139
CviJI	RGCY	8 cut(s)	5, 14, 100, 118, 134, 148, 155, 184
CviKI_1	RGCY	8 cut(s)	5, 14, 100, 118, 134, 148, 155, 184
DdeI	CTNAG	2 cut(s)	179, 233
DpnI	GATC	2 cut(s)	300, 335
DpnII	GATC	2 cut(s)	298, 333
Eco31I	GGTCTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	2 cut(s)	25, 142
FaiI	YATR	6 cut(s)	23, 51, 86, 140, 219, 343
FatI	CATG	2 cut(s)	21, 138
FokI	GGATG	1 cut(s)	298
FspBI	CTAG	1 cut(s)	101
GsuI	CTGGAG	2 cut(s)	86, 170
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	25, 142
HinfI	GANTC	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	32, 187
HpyCH4III	ACNGT	3 cut(s)	227, 270, 323
HpyCH4V	TGCA	2 cut(s)	88, 128
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 70, 161
HpyF3I	CTNAG	2 cut(s)	179, 233
Hsp92II	CATG	2 cut(s)	25, 142
Kzo9I	GATC	2 cut(s)	298, 333
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	28, 50, 55, 158, 183, 200
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	17, 227
MalI	GATC	2 cut(s)	300, 335
MboI	GATC	2 cut(s)	298, 333
MboII	GAAGA	5 cut(s)	65, 118, 221, 224, 308
MfeI	CAATTG	1 cut(s)	242
MluCI	AATT	4 cut(s)	81, 90, 122, 242
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	2 cut(s)	186, 339
MnlI	CCTC	7 cut(s)	108, 154, 166, 174, 183, 240, 250
MseI	TTAA	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	11, 70, 161
NdeII	GATC	2 cut(s)	298, 333
NlaIII	CATG	2 cut(s)	25, 142
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	142
PciI	ACATGT	1 cut(s)	138
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PscI	ACATGT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	185
PstNI	CAGNNNCTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	298, 333
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	5 cut(s)	102, 136, 150, 177, 234
SfaNI	GCATC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	4 cut(s)	81, 90, 122, 242
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	3 cut(s)	227, 270, 323
TaqI	TCGA	3 cut(s)	279, 294, 336
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	4 cut(s)	81, 90, 122, 242
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	66
XapI	RAATTY	2 cut(s)	90, 122
XceI	RCATGY	1 cut(s)	142
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.