Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0018046

Physical Location & Seq

Genomic Coordinates Forward (+)

33711746 .. 33712024

Gene Structure 279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG296600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCTGTTGAGGCTTGTGACAGGGAAATTCTGGAAAAGACCAGGAAATATGAAGAACTAATGCTGGAGAAGCACAAAAAGAAGATGCAAGTCCAACAGCTGGAGAAGATTGTGAGGCTTAAACTTGCAGAGGCTGATATGTTCCAACTCAAGGCCAATGAGGCAAAACAAGAGGTGCTGAGGCTCCAGAAGATTGCTCTTGTGTCGGAAGAAGAATATGCTAACAGCTACCTGAAAACAATTGAGGGAAGCCGCGGTAGAGAAGCAGTATCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0007275 GO:0008150 GO:0009536 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010015 GO:0010071 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010468 GO:0010492 GO:0016032 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031347 GO:0032501 GO:0032502 GO:0040011 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046740 GO:0046794 GO:0046982 GO:0046983 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080134 GO:0090421 GO:0098727 GO:0099402 GO:1902579 GO:1902586 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

92

Amino Acids

10.77

Weight (kDa)

7.81

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oberon_cc	PF16312	2 - 80	1.3e-22	Coiled-coil region of Oberon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25480 FvH4_7g06700
rosa_chinensis	RchiOBHm_Chr7g0215721
rosa_laevigata	RLG00000002631
rosa_multiflora	Rmu_co8284905.1_g000001 Rmu_sc0000898.1_g000017
rosa_roxburghii	Rroxscaffold_3G00243900
rosa_samantha	Rh7AG293300 Rh7BG285600 Rh7CG313400 Rh7DG296600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccII	CGCG	1 cut(s)	255
AciI	CCGC	2 cut(s)	253, 255
AcsI	RAATTY	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	100, 151
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	2 cut(s)	100, 228
AluI	AGCT	2 cut(s)	100, 228
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	75
BpmI	CTGGAG	3 cut(s)	86, 122, 170
Bpu10I	CCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 151
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	100, 151
BseMII	CTCAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	100, 151
BsnI	GGCC	1 cut(s)	155
BspACI	CCGC	2 cut(s)	253, 255
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 70, 161
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	253
CaiI	CAGNNNCTG	1 cut(s)	134
Cfr42I	CCGCGG	1 cut(s)	256
CviJI	RGCY	9 cut(s)	5, 14, 100, 118, 134, 155, 184, 228, 252
CviKI_1	RGCY	9 cut(s)	5, 14, 100, 118, 134, 155, 184, 228, 252
DdeI	CTNAG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	41
FaiI	YATR	3 cut(s)	51, 140, 219
Fnu4HI	GCNGC	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	253
GsuI	CTGGAG	3 cut(s)	86, 122, 170
HaeIII	GGCC	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	32, 187
HpyCH4V	TGCA	2 cut(s)	88, 128
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 70, 161
HpyF3I	CTNAG	1 cut(s)	179
KspI	CCGCGG	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	8 cut(s)	7, 17, 28, 50, 55, 86, 200, 245
LweI	GCATC	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	6 cut(s)	65, 94, 118, 202, 221, 224
MfeI	CAATTG	1 cut(s)	240
MluCI	AATT	3 cut(s)	27, 240, 274
MmeI	TCCRAC	3 cut(s)	118, 169, 186
MnlI	CCTC	7 cut(s)	4, 108, 124, 154, 166, 174, 238
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	2 cut(s)	100, 255
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	11, 70, 161
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	185
PstNI	CAGNNNCTG	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	100
SacII	CCGCGG	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	4 cut(s)	102, 177, 230, 234
SfaNI	GCATC	1 cut(s)	75
Sfr303I	CCGCGG	1 cut(s)	256
SgrBI	CCGCGG	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	3 cut(s)	27, 240, 274
SsiI	CCGC	2 cut(s)	253, 255
StyD4I	CCNGG	1 cut(s)	41
TasI	AATT	3 cut(s)	27, 240, 274
TauI	GCSGC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.