Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8284905.1

Orthogroup ID

OG0018046

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 468

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8284905.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggaaatggtagctgatgatgatgagaagatgagaatgtacgagagagcacgaatggctgttgaggcttgtgacagggaaattctggaaaagaccaggaaatatgaagaactaatgctggagaagcacaaaaggaagatgcaagtccatcagctggagaagattgtgaggcttaaacttgcagaggctgatatgttccaactcaaggccaatgaggcaaaacaagaggtgctgaggctccagaagattgctcttgtgtcggaagaagaatatgctaacagctacctgaaacaacaattgagggaagccgcggtagagaagcagtatctaattgagaagattagacttgaagaacattcacaggcatccaacaactgtggtggtggtggtcctgctcacacattgattcattcgaaaatggatgatctgctttatggtgacactcctaagacggagtttaattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0007275 GO:0008150 GO:0009536 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010015 GO:0010071 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010468 GO:0010492 GO:0016032 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031347 GO:0032501 GO:0032502 GO:0040011 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046740 GO:0046794 GO:0046982 GO:0046983 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080134 GO:0090421 GO:0098727 GO:0099402 GO:1902579 GO:1902586 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

155

Amino Acids

18.26

Weight (kDa)

5.81

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25480 FvH4_7g06700
rosa_chinensis	RchiOBHm_Chr7g0215721
rosa_laevigata	RLG00000002631
rosa_multiflora	Rmu_co8284905.1_g000001 Rmu_sc0000898.1_g000017
rosa_roxburghii	Rroxscaffold_3G00243900
rosa_samantha	Rh7AG293300 Rh7BG285600 Rh7CG313400 Rh7DG296600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccII	CGCG	1 cut(s)	311
AciI	CCGC	2 cut(s)	309, 311
AcsI	RAATTY	1 cut(s)	81
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	154, 205
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	3 cut(s)	14, 154, 282
AluI	AGCT	3 cut(s)	14, 154, 282
Alw21I	GWGCWC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	449
AsuII	TTCGAA	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	52
BbvCI	CCTCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	97
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	129, 374
BpmI	CTGGAG	3 cut(s)	140, 176, 224
Bpu10I	CCTNAGC	1 cut(s)	233
Bpu14I	TTCGAA	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 205
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	365, 427
BseLI	CCNNNNNNNGG	2 cut(s)	154, 205
BseMII	CTCAG	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	154, 205
BsnI	GGCC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	2 cut(s)	309, 311
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	377
BstBI	TTCGAA	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	233, 447
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	365, 427
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 65, 124, 215
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstUI	CGCG	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	365, 427
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	389
Cfr42I	CCGCGG	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	40
CspCI	CAANNNNNGTGG	4 cut(s)	358, 361, 393, 396
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	233, 447
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	95
FaiI	YATR	4 cut(s)	105, 194, 273, 435
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	352, 434
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	3 cut(s)	140, 176, 224
HaeIII	GGCC	1 cut(s)	209
HinfI	GANTC	1 cut(s)	406
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	86, 241
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	142, 182
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 65, 124, 215
HpyF3I	CTNAG	2 cut(s)	233, 447
KspI	CCGCGG	1 cut(s)	312
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	243
LweI	GCATC	2 cut(s)	129, 374
MaeIII	GTNAC	2 cut(s)	71, 437
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	9 cut(s)	40, 119, 148, 172, 256, 275, 278, 349, 362
MfeI	CAATTG	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	4 cut(s)	81, 296, 330, 460
MmeI	TCCRAC	3 cut(s)	223, 240, 393
MnlI	CCTC	7 cut(s)	58, 162, 178, 208, 220, 228, 294
MseI	TTAA	2 cut(s)	174, 459
MspA1I	CMGCKG	2 cut(s)	154, 311
MspR9I	CCNGG	1 cut(s)	97
MunI	CAATTG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	4 cut(s)	56, 65, 124, 215
NdeII	GATC	1 cut(s)	424
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	2 cut(s)	71, 437
NspV	TTCGAA	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	406
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SacII	CCGCGG	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	174, 459
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	5 cut(s)	16, 156, 231, 284, 288
SfaNI	GCATC	2 cut(s)	129, 374
Sfr303I	CCGCGG	1 cut(s)	312
SfuI	TTCGAA	1 cut(s)	413
SgrBI	CCGCGG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	4 cut(s)	81, 296, 330, 460
SsiI	CCGC	2 cut(s)	309, 311
StyD4I	CCNGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	1 cut(s)	413
TasI	AATT	4 cut(s)	81, 296, 330, 460
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	2 cut(s)	174, 459
Tru9I	TTAA	2 cut(s)	174, 459
TseFI	GTSAC	2 cut(s)	71, 437
Tsp45I	GTSAC	2 cut(s)	71, 437
TspDTI	ATGAA	2 cut(s)	120, 398
TspGWI	ACGGA	1 cut(s)	467
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.