Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018046

Physical Location & Seq

Genomic Coordinates Reverse (-)

37298064 .. 37301247

Gene Structure 3184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002631

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAAAATGGAGAAGCTGAAGACTCAGAACCCAGATGGGTTTTGCAGGAAGGTCATGACGGACGACCAAGTCGAGCAACTCCGGAAACAGATCGCCGTCTACGCCGTCATCTGTGAGCAGCTTGTTGATATGCACAAGGCCTTCACTGCCCAACAGGATCTTTCTGGAACGAAGATGGGAAGTGTGTATGGCGATTTGATGGCATCTGGTGGCAGCAAGAACAGAAGAGCTCGTTCAAAGAGAAAGCAATCGGTGCCAGCACGGAACATTACAGAATCAGATCTAGAGCCCGAAGTTATTTCTCCCAAGGATAAGAAGACAAAACCGGAAGACATGTACTTTCAAAGTCCTGATTCAGGATATGAGAATCTCAAATGGAGTAGGCATACATTAGGAAATACATTTGTAATCCTCGATTTTTCAATGCATTATGGAGGAATAAATTCCTACCATACTTTCAAGGATCACATTTTTAAGGAGTTTGATTATGCTTCCATGATCAACCGTTCAATGTTTCCTCAAGAGCTTGAGCCTCATGTAGAGTCTCCAAAGATCCTTGAAAATGAGGTGGGTGAACAGCTGATGGCCCCGGAAAATATTGCCACAGTGAAGATGGAAATGGTAGCTGATGATGATGAGAAGATGAGAATGTACGAGAGAGCACGAATGGCTGTTGAGGCTTGTGACAGGGAACTTCTGGAAAAGACCAGGAAATATGAAGAACTAATGCTGGAGAAGCACAAAAAGAAGATGCAAGTCCAACAGCTGGAGAAGATTGTGAGGCTCAAACTTGCAGAGGCTGATATGTTCCAACTCAAGGCCAATGAGGCAAAACAAGAGGTGCTGAGGCTCCAGAAGATTGCTCTTGTGTCGGAAGAAGAATATGCTAACAGTTACCTGAAACAACAATTGAGGGATACCACGGCAGAAAAGCAGTATCTAATTGATCATGAGAAGATTAGACTCGAAGAACATTCACAGGCATCCAACAACTGTGGTGGTGGTGGTCCTGCTCAGACATCGATTCATTCGAAAATGGATGATCTGCTTTACGGTGACACTCCTAAGACGGAGTTTAATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0007275 GO:0008150 GO:0009536 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010015 GO:0010071 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010468 GO:0010492 GO:0016032 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031347 GO:0032501 GO:0032502 GO:0040011 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046740 GO:0046794 GO:0046982 GO:0046983 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080134 GO:0090421 GO:0098727 GO:0099402 GO:1902579 GO:1902586 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

362

Amino Acids

41.81

Weight (kDa)

6.01

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oberon_cc	PF16312	219 - 350	2.5e-30	Coiled-coil region of Oberon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25480 FvH4_7g06700
rosa_chinensis	RchiOBHm_Chr7g0215721
rosa_laevigata	RLG00000002631
rosa_multiflora	Rmu_co8284905.1_g000001 Rmu_sc0000898.1_g000017
rosa_roxburghii	Rroxscaffold_3G00243900
rosa_samantha	Rh7AG293300 Rh7BG285600 Rh7CG313400 Rh7DG296600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	766
AccI	GTMKAC	1 cut(s)	99
AccIII	TCCGGA	1 cut(s)	81
AclWI	GGATC	3 cut(s)	165, 471, 547
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	338, 653
AfiI	CCNNNNNNNGG	3 cut(s)	356, 766, 817
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	6 cut(s)	237, 344, 423, 460, 510, 560
AjnI	CCWGG	1 cut(s)	707
AluBI	AGCT	7 cut(s)	16, 121, 230, 526, 580, 626, 766
AluI	AGCT	7 cut(s)	16, 121, 230, 526, 580, 626, 766
Alw21I	GWGCWC	2 cut(s)	232, 664
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	3 cut(s)	165, 471, 547
AlwNI	CAGNNNCTG	1 cut(s)	800
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	3 cut(s)	138, 585, 819
ApeKI	GCWGC	2 cut(s)	118, 213
ApoI	RAATTY	1 cut(s)	442
Asp700I	GAANNNNTTC	1 cut(s)	442
AspS9I	GGNCC	2 cut(s)	586, 1007
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	584, 1067
AsuII	TTCGAA	1 cut(s)	1031
AvaII	GGWCC	1 cut(s)	1007
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	2 cut(s)	232, 291
BbsI	GAAGAC	3 cut(s)	26, 323, 336
Bbv12I	GWGCWC	2 cut(s)	232, 664
BbvCI	CCTCAGC	1 cut(s)	845
BbvI	GCAGC	2 cut(s)	130, 225
BccI	CCATC	5 cut(s)	29, 169, 193, 577, 607
BceAI	ACGGC	3 cut(s)	80, 89, 939
BciT130I	CCWGG	1 cut(s)	709
BciVI	GTATCC	1 cut(s)	910
BclI	TGATCA	2 cut(s)	498, 946
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	910
BglI	GCCNNNNNGGC	1 cut(s)	827
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	2 cut(s)	119, 214
BlsI	GCNGC	2 cut(s)	120, 215
Bme1390I	CCNGG	2 cut(s)	590, 709
Bme18I	GGWCC	1 cut(s)	1007
BmgT120I	GGNCC	2 cut(s)	586, 1007
BmiI	GGNNCC	3 cut(s)	255, 588, 851
BmrFI	CCNGG	2 cut(s)	590, 709
BmsI	GCATC	3 cut(s)	212, 741, 992
BpiI	GAAGAC	3 cut(s)	26, 323, 336
BpmI	CTGGAG	3 cut(s)	752, 788, 836
Bpu10I	CCTNAGC	1 cut(s)	845
Bpu14I	TTCGAA	1 cut(s)	1031
BpuEI	CTTGAG	3 cut(s)	504, 548, 800
BpuMI	CCSGG	1 cut(s)	590
Bsa29I	ATCGAT	1 cut(s)	1022
BsaJI	CCNNGG	3 cut(s)	306, 588, 921
BsaWI	WCCGGW	2 cut(s)	81, 325
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 766, 817
BseAI	TCCGGA	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	709
BseCI	ATCGAT	1 cut(s)	1022
BseDI	CCNNGG	3 cut(s)	306, 588, 921
BseGI	GGATG	2 cut(s)	983, 1045
BseLI	CCNNNNNNNGG	3 cut(s)	356, 766, 817
BseMII	CTCAG	3 cut(s)	38, 836, 1028
BseXI	GCAGC	2 cut(s)	130, 225
BshFI	GGCC	3 cut(s)	140, 587, 821
BshNI	GGYRCC	1 cut(s)	253
BshVI	ATCGAT	1 cut(s)	1022
BsiHKAI	GWGCWC	2 cut(s)	232, 664
BsiSI	CCGG	3 cut(s)	82, 326, 590
BslI	CCNNNNNNNGG	3 cut(s)	356, 766, 817
BsmAI	GTCTC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	140, 587, 821
Bsp119I	TTCGAA	1 cut(s)	1031
Bsp1286I	GDGCHC	3 cut(s)	232, 291, 664
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	8 cut(s)	90, 157, 280, 463, 498, 552, 946, 1042
BspANI	GGCC	3 cut(s)	140, 587, 821
BspCNI	CTCAG	3 cut(s)	37, 837, 1027
BspDI	ATCGAT	1 cut(s)	1022
BspEI	TCCGGA	1 cut(s)	81
BspHI	TCATGA	2 cut(s)	54, 949
BspLI	GGNNCC	3 cut(s)	255, 588, 851
BspPI	GGATC	3 cut(s)	165, 471, 547
BspQI	GCTCTTC	1 cut(s)	220
BspT104I	TTCGAA	1 cut(s)	1031
BspT107I	GGYRCC	1 cut(s)	253
BssECI	CCNNGG	3 cut(s)	306, 588, 921
BssMI	GATC	8 cut(s)	90, 157, 280, 463, 498, 552, 946, 1042
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	709
Bst4CI	ACNGT	5 cut(s)	506, 607, 893, 995, 1055
Bst6I	CTCTTC	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstBI	TTCGAA	1 cut(s)	1031
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	4 cut(s)	24, 845, 1014, 1065
BstDSI	CCRYGG	1 cut(s)	921
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	983, 1045
BstKTI	GATC	8 cut(s)	93, 160, 283, 466, 501, 555, 949, 1045
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	8 cut(s)	90, 157, 280, 463, 498, 552, 946, 1042
BstMWI	GCNNNNNNNGC	7 cut(s)	101, 146, 253, 668, 677, 736, 827
BstNI	CCWGG	1 cut(s)	709
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	588, 707
BstV1I	GCAGC	2 cut(s)	130, 225
BstV2I	GAAGAC	3 cut(s)	26, 323, 336
BstX2I	RGATCY	3 cut(s)	157, 280, 552
BstYI	RGATCY	3 cut(s)	157, 280, 552
Bsu15I	ATCGAT	1 cut(s)	1022
BsuI	GTATCC	1 cut(s)	910
BsuRI	GGCC	3 cut(s)	140, 587, 821
BsuTUI	ATCGAT	1 cut(s)	1022
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	983, 1045
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 612
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	800
CciI	TCATGA	2 cut(s)	54, 949
Cfr13I	GGNCC	2 cut(s)	586, 1007
ClaI	ATCGAT	1 cut(s)	1022
Csp6I	GTAC	2 cut(s)	337, 652
CspCI	CAANNNNNGTGG	4 cut(s)	976, 979, 1011, 1014
CviAII	CATG	5 cut(s)	55, 334, 496, 536, 950
CviQI	GTAC	2 cut(s)	337, 652
DdeI	CTNAG	4 cut(s)	24, 845, 1014, 1065
DpnI	GATC	8 cut(s)	92, 159, 282, 465, 500, 554, 948, 1044
DpnII	GATC	8 cut(s)	90, 157, 280, 463, 498, 552, 946, 1042
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	232, 291
Eco47I	GGWCC	1 cut(s)	1007
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	707
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	232, 291
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	5 cut(s)	58, 337, 499, 539, 953
FatI	CATG	5 cut(s)	54, 333, 495, 535, 949
FbaI	TGATCA	2 cut(s)	498, 946
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	119, 214
FokI	GGATG	2 cut(s)	970, 1052
FriOI	GRGCYC	2 cut(s)	232, 291
Fsp4HI	GCNGC	2 cut(s)	119, 214
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	2 cut(s)	119, 214
GsuI	CTGGAG	3 cut(s)	752, 788, 836
HaeIII	GGCC	3 cut(s)	140, 587, 821
HapII	CCGG	3 cut(s)	82, 326, 590
Hin1II	CATG	5 cut(s)	58, 337, 499, 539, 953
HinfI	GANTC	7 cut(s)	22, 275, 353, 367, 542, 963, 1024
HpaII	CCGG	3 cut(s)	82, 326, 590
HphI	GGTGA	2 cut(s)	584, 1067
Hpy166II	GTNNAC	2 cut(s)	100, 575
Hpy188I	TCNGA	4 cut(s)	27, 280, 874, 1017
Hpy8I	GTNNAC	2 cut(s)	100, 575
HpyAV	CCTTC	2 cut(s)	43, 151
HpyCH4III	ACNGT	5 cut(s)	506, 607, 893, 995, 1055
HpyCH4V	TGCA	5 cut(s)	45, 133, 427, 754, 794
HpyF10VI	GCNNNNNNNGC	7 cut(s)	101, 146, 253, 668, 677, 736, 827
HpyF3I	CTNAG	4 cut(s)	24, 845, 1014, 1065
Hsp92II	CATG	5 cut(s)	58, 337, 499, 539, 953
Kpn2I	TCCGGA	1 cut(s)	81
Ksp22I	TGATCA	2 cut(s)	498, 946
Kzo9I	GATC	8 cut(s)	90, 157, 280, 463, 498, 552, 946, 1042
LguI	GCTCTTC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	855
Lsp1109I	GCAGC	2 cut(s)	130, 225
LweI	GCATC	3 cut(s)	212, 741, 992
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	3 cut(s)	683, 893, 1055
MalI	GATC	8 cut(s)	92, 159, 282, 465, 500, 554, 948, 1044
MboI	GATC	8 cut(s)	90, 157, 280, 463, 498, 552, 946, 1042
MfeI	CAATTG	1 cut(s)	908
MflI	RGATCY	3 cut(s)	157, 280, 552
MhlI	GDGCHC	3 cut(s)	232, 291, 664
MluCI	AATT	4 cut(s)	442, 908, 942, 1078
MlyI	GAGTC	3 cut(s)	16, 551, 957
MmeI	TCCRAC	4 cut(s)	784, 835, 852, 1011
Mph1103I	ATGCAT	1 cut(s)	429
MroI	TCCGGA	1 cut(s)	81
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	2 cut(s)	474, 1077
MspA1I	CMGCKG	2 cut(s)	580, 766
MspI	CCGG	3 cut(s)	82, 326, 590
MspR9I	CCNGG	2 cut(s)	590, 709
MunI	CAATTG	1 cut(s)	908
MvaI	CCWGG	1 cut(s)	709
MwoI	GCNNNNNNNGC	7 cut(s)	101, 146, 253, 668, 677, 736, 827
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	8 cut(s)	90, 157, 280, 463, 498, 552, 946, 1042
NlaIII	CATG	5 cut(s)	58, 337, 499, 539, 953
NlaIV	GGNNCC	3 cut(s)	255, 588, 851
NmuCI	GTSAC	2 cut(s)	683, 1055
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	1031
PagI	TCATGA	2 cut(s)	54, 949
PceI	AGGCCT	1 cut(s)	140
PciI	ACATGT	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 1028
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	4 cut(s)	275, 353, 367, 1024
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	766
PkrI	GCNGC	2 cut(s)	120, 215
PleI	GAGTC	3 cut(s)	16, 550, 957
PpsI	GAGTC	3 cut(s)	16, 550, 957
PscI	ACATGT	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	707
PspGI	CCWGG	1 cut(s)	707
PspN4I	GGNNCC	3 cut(s)	255, 588, 851
PspPI	GGNCC	2 cut(s)	586, 1007
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	3 cut(s)	157, 280, 552
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	2 cut(s)	580, 766
RsaI	GTAC	2 cut(s)	338, 653
RsaNI	GTAC	2 cut(s)	337, 652
SacI	GAGCTC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	474, 1077
SatI	GCNGC	2 cut(s)	119, 214
Sau3AI	GATC	8 cut(s)	90, 157, 280, 463, 498, 552, 946, 1042
Sau96I	GGNCC	2 cut(s)	586, 1007
SchI	GAGTC	3 cut(s)	16, 551, 957
ScrFI	CCNGG	2 cut(s)	590, 709
SduI	GDGCHC	3 cut(s)	232, 291, 664
SfaNI	GCATC	3 cut(s)	212, 741, 992
SfuI	TTCGAA	1 cut(s)	1031
SinI	GGWCC	1 cut(s)	1007
SmlI	CTYRAG	3 cut(s)	519, 527, 815
SmoI	CTYRAG	3 cut(s)	519, 527, 815
Sse9I	AATT	4 cut(s)	442, 908, 942, 1078
SseBI	AGGCCT	1 cut(s)	140
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	232
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	588, 707
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	5 cut(s)	506, 607, 893, 995, 1055
TaqI	TCGA	5 cut(s)	72, 414, 966, 1022, 1031
TasI	AATT	4 cut(s)	442, 908, 942, 1078
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	4 cut(s)	275, 353, 367, 1024
Tru1I	TTAA	2 cut(s)	474, 1077
Tru9I	TTAA	2 cut(s)	474, 1077
TscAI	CASTG	2 cut(s)	151, 612
TseFI	GTSAC	2 cut(s)	683, 1055
TseI	GCWGC	2 cut(s)	118, 213
Tsp45I	GTSAC	2 cut(s)	683, 1055
TspDTI	ATGAA	3 cut(s)	17, 732, 1016
TspGWI	ACGGA	3 cut(s)	74, 277, 1085
TspRI	CASTG	2 cut(s)	151, 612
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	766
VpaK11BI	GGWCC	1 cut(s)	1007
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	1 cut(s)	442
XbaI	TCTAGA	1 cut(s)	283
XceI	RCATGY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.