FvH4_5g29830

BEST Arabidopsis thaliana protein match is glycosyltransferase family protein 2 (TAIR AT5G60700.1)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
20723339 .. 20728186
4848 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29830.t2

Sequence Viewer

Length: 1302 bp
ATGCCTCCAATTCTCGCCCTTACATCTATGGAGCTTCGCTGCAGAGACCAAGGTAAACACGGGAACAAACTAAAAGTGGATGATAGAACACGGCTCTTTTTATACCAACTGGTTGGTACTTGGGGTCAACTTCTCTTTCCAAAACCATGGAAAGAATTCAGGTTGTGGTATGACAAACACAAGGCAAAAGGCATTAAGCCATTTCTCGATGGCATGGTGACAACTGGGTGGTATAAAAAGATCGGAGAGAAGATCTGGACACCTTGGTTTATTAAATTTGTTCATACTCGTGGCTATTTCAATATCTACACTAACTTTTTACATGAGAGAGCGCTTAGCGTCTCGCACAGAGATGCTGGTGTTAATTATGGGAAAACAGCTGGGCCTGATTCACATATATTGGATGAAAGTTCTCTTGAACCTAAGTTTTGGAATACGCTTCCGTTGGGTGATCTCAAGTGGTATGATTTTTGTTTCAGAGAAATATTTCCTGAAAGAGTAATTGGGAGCCTTGATGAACTTGGATCTGTTCTTAATTCTGTGCAGACAAACAACACTGTTATTATTGTCAGCCTGTTTGGGGTTAAAGAGATGGTAGTCAGCAACTTGCTCTGCCAGTTTGAGAGTCTAAATTTGCGGAACTACATACTTACTGGCCCCGAGTCTGAATTCCTGTTTGATCTGGCAAGAAGAGGACATCCAGTGATCATTACGAACCGGTTTCTGGAGAGTGTAGGAGCCTATAAATTGCTTTCTGTGCACAATTCTTATGTGCAATTGATTAGTGAAATATTAGTGAAGGTATATGTATTACAGAAGTGCTTAGAATCTAGGTACAGTTCCTGGGTGGTGGATGGTAACATGCTTCCAGTCAGCGCCGACCCATTTGTCGTCGAGTCTGATCCCTCATATGATTTCTATATTGGTACGAGCCCAGAACTCTTCTTTGCTAGAGCGTCATCTTCTGCTCAGAAAGATGTTGGGGGTACTGATTTCATATCAAACTTTGCAATGCTGGTGAATTCTCTGCTTGTCAGGCAACAGAGTGTAAGTTTTGGGTATGTAATGGCCAAGTTCTTGGAAATGAAGAAGAGTGCAAGAGTGAACACTCTCGATGAGACAAGTTTTGGCCTTCGGGTTGATAACAGTATTGTTAATCAATCTTTAGGGGACGGTAAGAAGATAGTATTTTGGCCGAGTGATATGGCTTCAGAAATTGTTCAGAAACGGCTTCAAGAAATCGATATTTGGGTTATAAATGATGACTCTTCTTGTAAGGCTATTGTTTGCCACCAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

434

Amino Acids

49.46

Weight (kDa)

7.62

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1256
AasI GACNNNNNNGTC 1 cut(s) 887
AciI CCGC 1 cut(s) 637
AclWI GGATC 2 cut(s) 532, 896
AcoI YGGCCR 2 cut(s) 1068, 1193
AcsI RAATTY 5 cut(s) 155, 275, 631, 668, 1021
AcuI CTGAAG 1 cut(s) 1194
AfaI GTAC 4 cut(s) 118, 836, 928, 988
AfeI AGCGCT 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 580, 724
AgeI ACCGGT 1 cut(s) 717
AgsI TTSAA 3 cut(s) 301, 419, 1235
AjnI CCWGG 1 cut(s) 842
AjuI GAANNNNNNNTTGG 2 cut(s) 486, 518
AluBI AGCT 2 cut(s) 34, 380
AluI AGCT 2 cut(s) 34, 380
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 3 cut(s) 39, 346, 1112
Alw44I GTGCAC 1 cut(s) 758
AlwI GGATC 2 cut(s) 532, 896
AlwNI CAGNNNCTG 1 cut(s) 843
Ama87I CYCGRG 1 cut(s) 659
Aor51HI AGCGCT 1 cut(s) 333
AoxI GGCC 5 cut(s) 383, 655, 1068, 1129, 1193
ApaLI GTGCAC 1 cut(s) 758
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 5 cut(s) 155, 275, 631, 668, 1021
AsiGI ACCGGT 1 cut(s) 717
Asp700I GAANNNNTTC 3 cut(s) 155, 486, 1218
AspLEI GCGC 2 cut(s) 334, 878
AspS9I GGNCC 2 cut(s) 383, 656
AsuHPI GGTGA 3 cut(s) 229, 461, 1030
AvaI CYCGRG 1 cut(s) 659
BaeGI GKGCMC 1 cut(s) 762
BalI TGGCCA 1 cut(s) 1070
BanII GRGCYC 1 cut(s) 935
BauI CACGAG 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 1 cut(s) 26
BccI CCATC 3 cut(s) 203, 586, 848
BceAI ACGGC 2 cut(s) 107, 1244
BciT130I CCWGG 1 cut(s) 844
BclI TGATCA 1 cut(s) 705
BcoDI GTCTC 3 cut(s) 39, 346, 1112
BfaI CTAG 2 cut(s) 831, 951
BfmI CTRYAG 1 cut(s) 40
BfoI RGCGCY 2 cut(s) 335, 879
BglII AGATCT 1 cut(s) 252
BisI GCNGC 1 cut(s) 40
BlpI GCTNAGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 844
BmeT110I CYCGRG 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 383, 656
BmiI GGNNCC 3 cut(s) 509, 658, 739
BmrFI CCNGG 1 cut(s) 844
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 343
BmuI ACTGGG 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 746
Bpu1102I GCTNAGC 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 440
Bsa29I ATCGAT 1 cut(s) 1242
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 4 cut(s) 49, 146, 263, 843
BsaWI WCCGGW 1 cut(s) 717
Bsc4I CCNNNNNNNGG 2 cut(s) 580, 724
Bse118I RCCGGY 1 cut(s) 717
Bse1I ACTGG 7 cut(s) 114, 229, 616, 658, 701, 869, 1294
Bse3DI GCAATG 1 cut(s) 1017
BseBI CCWGG 1 cut(s) 844
BseCI ATCGAT 1 cut(s) 1242
BseDI CCNNGG 4 cut(s) 49, 146, 263, 843
BseGI GGATG 4 cut(s) 85, 409, 697, 859
BseLI CCNNNNNNNGG 2 cut(s) 580, 724
BseMI GCAATG 1 cut(s) 1017
BseMII CTCAG 1 cut(s) 983
BseNI ACTGG 7 cut(s) 114, 229, 616, 658, 701, 869, 1294
BseSI GKGCMC 1 cut(s) 762
BseXI GCAGC 1 cut(s) 26
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 563
BshFI GGCC 5 cut(s) 385, 657, 1070, 1131, 1195
BshTI ACCGGT 1 cut(s) 717
BshVI ATCGAT 1 cut(s) 1242
BsiHKAI GWGCWC 1 cut(s) 762
BsiHKCI CYCGRG 1 cut(s) 659
BsiSI CCGG 1 cut(s) 718
BslFI GGGAC 1 cut(s) 1184
BslI CCNNNNNNNGG 2 cut(s) 580, 724
BsmAI GTCTC 3 cut(s) 39, 346, 1112
BsmBI CGTCTC 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 1184
BsnI GGCC 5 cut(s) 385, 657, 1070, 1131, 1195
Bso31I GGTCTC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 659
Bsp1286I GDGCHC 2 cut(s) 762, 935
Bsp143I GATC 7 cut(s) 240, 252, 451, 524, 679, 705, 901
Bsp1720I GCTNAGC 1 cut(s) 335
Bsp19I CCATGG 1 cut(s) 146
BspACI CCGC 1 cut(s) 637
BspANI GGCC 5 cut(s) 385, 657, 1070, 1131, 1195
BspCNI CTCAG 1 cut(s) 982
BspDI ATCGAT 1 cut(s) 1242
BspLI GGNNCC 3 cut(s) 509, 658, 739
BspMAI CTGCAG 1 cut(s) 44
BspPI GGATC 2 cut(s) 532, 896
BspTNI GGTCTC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 1017
BsrFI RCCGGY 1 cut(s) 717
BsrI ACTGG 7 cut(s) 114, 229, 616, 658, 701, 869, 1294
BssAI RCCGGY 1 cut(s) 717
BssECI CCNNGG 4 cut(s) 49, 146, 263, 843
BssMI GATC 7 cut(s) 240, 252, 451, 524, 679, 705, 901
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 3 cut(s) 49, 146, 263
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 844
Bst4CI ACNGT 4 cut(s) 559, 839, 1148, 1175
Bst6I CTCTTC 4 cut(s) 685, 947, 1085, 1273
BstDEI CTNAG 4 cut(s) 335, 423, 823, 969
BstDSI CCRYGG 1 cut(s) 146
BstF5I GGATG 4 cut(s) 85, 409, 697, 859
BstH2I RGCGCY 2 cut(s) 335, 879
BstHHI GCGC 2 cut(s) 334, 878
BstKTI GATC 7 cut(s) 243, 255, 454, 527, 682, 708, 904
BstMAI GTCTC 3 cut(s) 39, 346, 1112
BstMBI GATC 7 cut(s) 240, 252, 451, 524, 679, 705, 901
BstMWI GCNNNNNNNGC 2 cut(s) 757, 1036
BstNI CCWGG 1 cut(s) 844
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 842
BstSFI CTRYAG 1 cut(s) 40
BstSLI GKGCMC 1 cut(s) 762
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 252, 524
BstXI CCANNNNNNTGG 3 cut(s) 113, 147, 1078
BstYI RGATCY 2 cut(s) 252, 524
Bsu15I ATCGAT 1 cut(s) 1242
BsuRI GGCC 5 cut(s) 385, 657, 1070, 1131, 1195
BsuTUI ATCGAT 1 cut(s) 1242
BtgI CCRYGG 1 cut(s) 146
BtsCI GGATG 4 cut(s) 85, 409, 697, 859
BtsIMutI CAGTG 2 cut(s) 555, 708
CaiI CAGNNNCTG 1 cut(s) 843
CfoI GCGC 2 cut(s) 334, 878
Cfr10I RCCGGY 1 cut(s) 717
Cfr13I GGNCC 2 cut(s) 383, 656
ClaI ATCGAT 1 cut(s) 1242
CseI GACGC 2 cut(s) 328, 945
Csp6I GTAC 4 cut(s) 117, 835, 927, 987
CspAI ACCGGT 1 cut(s) 717
CviAII CATG 4 cut(s) 147, 214, 323, 862
CviQI GTAC 4 cut(s) 117, 835, 927, 987
DdeI CTNAG 4 cut(s) 335, 423, 823, 969
DpnI GATC 7 cut(s) 242, 254, 453, 526, 681, 707, 903
DpnII GATC 7 cut(s) 240, 252, 451, 524, 679, 705, 901
DrdI GACNNNNNNGTC 1 cut(s) 887
DseDI GACNNNNNNGTC 1 cut(s) 887
EaeI YGGCCR 2 cut(s) 1068, 1193
Eam1104I CTCTTC 4 cut(s) 685, 947, 1085, 1273
EarI CTCTTC 4 cut(s) 685, 947, 1085, 1273
Eco130I CCWWGG 3 cut(s) 49, 146, 263
Eco24I GRGCYC 1 cut(s) 935
Eco31I GGTCTC 1 cut(s) 39
Eco47III AGCGCT 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 1194
Eco88I CYCGRG 1 cut(s) 659
EcoRI GAATTC 3 cut(s) 155, 668, 1021
EcoRII CCWGG 1 cut(s) 842
EcoT14I CCWWGG 3 cut(s) 49, 146, 263
EcoT38I GRGCYC 1 cut(s) 935
ErhI CCWWGG 3 cut(s) 49, 146, 263
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 4 cut(s) 150, 217, 326, 865
FaqI GGGAC 1 cut(s) 1184
FatI CATG 4 cut(s) 146, 213, 322, 861
FauNDI CATATG 1 cut(s) 910
FbaI TGATCA 1 cut(s) 705
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 4 cut(s) 92, 416, 684, 866
FriOI GRGCYC 1 cut(s) 935
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 2 cut(s) 831, 951
GlaI GCGC 2 cut(s) 333, 877
GluI GCNGC 1 cut(s) 40
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 746
HaeII RGCGCY 2 cut(s) 335, 879
HaeIII GGCC 5 cut(s) 385, 657, 1070, 1131, 1195
HapII CCGG 1 cut(s) 718
HgaI GACGC 2 cut(s) 328, 945
HhaI GCGC 2 cut(s) 334, 878
Hin1II CATG 4 cut(s) 150, 217, 326, 865
Hin6I GCGC 2 cut(s) 332, 876
HinP1I GCGC 2 cut(s) 332, 876
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HinfI GANTC 6 cut(s) 389, 625, 662, 827, 896, 1265
HpaII CCGG 1 cut(s) 718
HphI GGTGA 3 cut(s) 229, 461, 1030
Hpy166II GTNNAC 4 cut(s) 56, 128, 760, 1105
Hpy188I TCNGA 7 cut(s) 245, 479, 667, 901, 972, 1213, 1224
Hpy188III TCNNGA 7 cut(s) 206, 256, 416, 491, 725, 1112, 1235
Hpy8I GTNNAC 4 cut(s) 56, 128, 760, 1105
Hpy99I CGWCG 1 cut(s) 896
HpyAV CCTTC 2 cut(s) 793, 1142
HpyCH4III ACNGT 4 cut(s) 559, 839, 1148, 1175
HpyCH4V TGCA 6 cut(s) 42, 544, 760, 775, 1010, 1097
HpyF10VI GCNNNNNNNGC 2 cut(s) 757, 1036
HpyF3I CTNAG 4 cut(s) 335, 423, 823, 969
Hsp92II CATG 4 cut(s) 150, 217, 326, 865
HspAI GCGC 2 cut(s) 332, 876
Ksp22I TGATCA 1 cut(s) 705
Kzo9I GATC 7 cut(s) 240, 252, 451, 524, 679, 705, 901
LmnI GCTCC 3 cut(s) 31, 507, 737
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 831, 951
MaeIII GTNAC 2 cut(s) 217, 857
MalI GATC 7 cut(s) 242, 254, 453, 526, 681, 707, 903
MboI GATC 7 cut(s) 240, 252, 451, 524, 679, 705, 901
MboII GAAGA 8 cut(s) 262, 702, 934, 954, 1099, 1102, 1192, 1260
MfeI CAATTG 1 cut(s) 776
MflI RGATCY 2 cut(s) 252, 524
MhlI GDGCHC 2 cut(s) 762, 935
MlsI TGGCCA 1 cut(s) 1070
MluNI TGGCCA 1 cut(s) 1070
MlyI GAGTC 4 cut(s) 634, 671, 905, 1259
MnlI CCTC 3 cut(s) 15, 686, 916
Mox20I TGGCCA 1 cut(s) 1070
MroXI GAANNNNTTC 3 cut(s) 155, 486, 1218
MscI TGGCCA 1 cut(s) 1070
MseI TTAA 6 cut(s) 195, 273, 363, 534, 585, 1155
MslI CAYNNNNRTG 2 cut(s) 288, 351
Msp20I TGGCCA 1 cut(s) 1070
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 1 cut(s) 718
MspR9I CCNGG 1 cut(s) 844
MunI CAATTG 1 cut(s) 776
MvaI CCWGG 1 cut(s) 844
MwoI GCNNNNNNNGC 2 cut(s) 757, 1036
NcoI CCATGG 1 cut(s) 146
NdeI CATATG 1 cut(s) 910
NdeII GATC 7 cut(s) 240, 252, 451, 524, 679, 705, 901
NlaIII CATG 4 cut(s) 150, 217, 326, 865
NlaIV GGNNCC 3 cut(s) 509, 658, 739
NmeAIII GCCGAG 1 cut(s) 1221
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 865
PdmI GAANNNNTTC 3 cut(s) 155, 486, 1218
PfeI GAWTC 2 cut(s) 389, 827
PinAI ACCGGT 1 cut(s) 717
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 4 cut(s) 633, 670, 904, 1259
PpsI GAGTC 4 cut(s) 633, 670, 904, 1259
PsiI TTATAA 1 cut(s) 1256
Psp6I CCWGG 1 cut(s) 842
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 1 cut(s) 842
PspN4I GGNNCC 3 cut(s) 509, 658, 739
PspPI GGNCC 2 cut(s) 383, 656
PstI CTGCAG 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 843
PsuI RGATCY 2 cut(s) 252, 524
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 4 cut(s) 118, 836, 928, 988
RsaNI GTAC 4 cut(s) 117, 835, 927, 987
RseI CAYNNNNRTG 2 cut(s) 288, 351
SaqAI TTAA 6 cut(s) 195, 273, 363, 534, 585, 1155
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 7 cut(s) 240, 252, 451, 524, 679, 705, 901
Sau96I GGNCC 2 cut(s) 383, 656
SchI GAGTC 4 cut(s) 634, 671, 905, 1259
ScrFI CCNGG 1 cut(s) 844
SduI GDGCHC 2 cut(s) 762, 935
SetI ASST 8 cut(s) 36, 55, 164, 265, 382, 424, 804, 836
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 40
SmiMI CAYNNNNRTG 2 cut(s) 288, 351
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SsiI CCGC 1 cut(s) 637
SspI AATATT 2 cut(s) 486, 792
SspMI CTAG 2 cut(s) 831, 951
StyD4I CCNGG 1 cut(s) 842
StyI CCWWGG 3 cut(s) 49, 146, 263
TaaI ACNGT 4 cut(s) 559, 839, 1148, 1175
TaqI TCGA 4 cut(s) 207, 894, 1113, 1242
TfiI GAWTC 2 cut(s) 389, 827
Tru1I TTAA 6 cut(s) 195, 273, 363, 534, 585, 1155
Tru9I TTAA 6 cut(s) 195, 273, 363, 534, 585, 1155
TscAI CASTG 2 cut(s) 562, 708
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 5 cut(s) 272, 420, 531, 985, 1100
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 2 cut(s) 562, 708
VneI GTGCAC 1 cut(s) 758
XapI RAATTY 5 cut(s) 155, 275, 631, 668, 1021
XceI RCATGY 1 cut(s) 865
XmnI GAANNNNTTC 3 cut(s) 155, 486, 1218
XspI CTAG 2 cut(s) 831, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.