Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002619

Physical Location & Seq

Genomic Coordinates Reverse (-)

26984422 .. 26986539

Gene Structure 2118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G012050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGTGGGACCCAAAACACAGTTGCTTCCACTGCTCCTCCTCCTCCTCTTCCTCTCCGCCCTCTCCTTCTTCTCCTACCACCACTCCTCCCTCCTAATCTCACTTTCAAGCCCTAACCCTAACCCTAACCTTAATCTCACTCACCACCCCCAAATTCCCAATTTCACCTTCATCATCAAGGTCCTCGCCTACAACCGCCTCGACTCCCTCTCCCGCTGCCTCCCTCCGCTCCTCGCCGCCGCCGACTACCTCTCCGACCGCGTCCACCTCCACCTCCACATTGACCATTTCCCCTCGCCGACGCCGCCGACGCCGATCGCAAGCTGCAGGAGTCGCTGGAAATTCGGGGACAAGGTCGTGCATTACCGGACTCGGAACGCGGGCCTCCAGGCCCAGTGGCTCGAGGCCTGGTGGCCCAGCTCCGATCACGAGTTCGCTTTCGTCGTGGAAGATGACTTGGAGGTGTCGCCGCTCTATTACATGTTTCTCAAGAATCTGATTGTGAATTACTACTACAACGCCTCCAATTCTCGTCCTTACATCTATGGAGCTTCGCTTCAGCGACCAAGGTTTGTTCCAGGTAAACACGGGAACAAACTACAATTGGATGATGGAACACGACTCTTTTTGTACCAACTGGTTGGCACTTGGGGTCAGCTTCTGTTTCCTAAACCTTGGAAAGAGTTCAGGTTGTGGTACGACAAACACAAGGCCAAAGGCATTAAGCCAATCCTCAATGGCATGGTAACAACTGGGTGGTATAAAAAGATGGGAGAGAAGATATGGACACCTTGGTTCATTAAATTCATTCATACTCGTGGCTATTTTAATATCTACACCAACTTTTTACATGAAAGAGCACTTAGTGCCTCTCACAGAGATGCTGGTGTCAATTATGGGAAGACAGCTGGGCCTGATTCACATATATTGGATGAAAGTTCTCTTGATTTGAAGTTTTGGGATATGCAACCGTTGAGTGATCTCAAGTGGTATGATTTTTGTTTCAGAGAAATATTTCCTGAAAGAGTTGTTGTGAGCCTTGATGAACTTGGGTCCACTCTTGATTCTGTGCAGAAACACAACACCGTTATTGTTGTTAGCCTGTTTGGGGCTAAAGAGATGGTAATAAGAAACCTACTCTGCCATTTTGAGACTCTAAATTTGCTGAANTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

45.13

Weight (kDa)

9.04

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12260
fragaria_vesca	FvH4_5g29830 FvH4_5g29830 FvH4_7g06910 FvH4_7g06910 FvH4_7g06910 FvH4_7g06910 FvH4_7g06910
malus_domestica	MD10G1340300.v1.1 MD13G1224500.v1.1 MD13G1224600.v1.1
prunus_persica	Prupe.1G051200_v2.0.a1 Prupe.1G051200_v2.0.a1
pyrus_communis	pycom13g19820 pycom16g19110
rosa_chinensis	RchiOBHm_Chr1g0336841 RchiOBHm_Chr7g0223431
rosa_laevigata	RLG00000001965 RLG00000029331 RLG00000029333
rosa_multiflora	Rmu_co8498753.1_g000002 Rmu_sc0007408.1_g000014
rosa_roxburghii	Rroxscaffold_3G00235810 Rroxscaffold_4G00315310
rosa_rugosa	Rorug01G0128200 Rorug07G0216600 Rorug07G0216600 Rorug07G0216600 Rorug07G0216600
rosa_samantha	Rh1AG149000 Rh1BG117100 Rh1CG140300 Rh1DG156300 Rh7AG360300 Rh7BG350400 Rh7CG378900 Rh7DG355800
rosa_wichuraiana	Rw1G012050 Rw1G012060 Rw7G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	229, 472
AccII	CGCG	2 cut(s)	261, 380
AcsI	RAATTY	4 cut(s)	153, 341, 803, 1159
AcuI	CTGAAG	1 cut(s)	542
AcyI	GRCGYC	2 cut(s)	302, 311
AdeI	CACNNNGTG	1 cut(s)	866
AfaI	GTAC	2 cut(s)	632, 698
AfiI	CCNNNNNNNGG	1 cut(s)	1108
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	108, 952
AjnI	CCWGG	3 cut(s)	387, 407, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	5 cut(s)	324, 420, 551, 658, 908
AluI	AGCT	5 cut(s)	324, 420, 551, 658, 908
Alw21I	GWGCWC	1 cut(s)	862
Alw26I	GTCTC	1 cut(s)	1145
AlwNI	CAGNNNCTG	1 cut(s)	661
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	6 cut(s)	382, 390, 405, 413, 711, 911
ApeKI	GCWGC	2 cut(s)	216, 324
ApoI	RAATTY	4 cut(s)	153, 341, 803, 1159
ArsI	GACNNNNNNTTYG	1 cut(s)	1144
Asp700I	GAANNNNTTC	2 cut(s)	683, 1014
AspS9I	GGNCC	7 cut(s)	8, 181, 382, 391, 414, 911, 1053
AsuHPI	GGTGA	2 cut(s)	134, 157
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	3 cut(s)	8, 181, 1053
BauI	CACGAG	2 cut(s)	428, 816
BbsI	GAAGAC	1 cut(s)	908
Bbv12I	GWGCWC	1 cut(s)	862
BbvI	GCAGC	2 cut(s)	203, 311
BccI	CCATC	3 cut(s)	605, 763, 1114
BciT130I	CCWGG	3 cut(s)	389, 409, 579
BcoDI	GTCTC	1 cut(s)	1145
BfmI	CTRYAG	1 cut(s)	325
BisI	GCNGC	6 cut(s)	217, 237, 240, 305, 325, 470
BlsI	GCNGC	6 cut(s)	218, 238, 241, 306, 326, 471
Bme1390I	CCNGG	3 cut(s)	389, 409, 579
Bme18I	GGWCC	3 cut(s)	8, 181, 1053
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	7 cut(s)	8, 181, 382, 391, 414, 911, 1053
BmiI	GGNNCC	3 cut(s)	9, 10, 1054
BmrFI	CCNGG	3 cut(s)	389, 409, 579
BmrI	ACTGGG	2 cut(s)	388, 762
BmsI	GCATC	1 cut(s)	871
BmuI	ACTGGG	2 cut(s)	388, 762
BpiI	GAAGAC	1 cut(s)	908
BpmI	CTGGAG	1 cut(s)	371
BpuEI	CTTGAG	2 cut(s)	473, 968
BsaHI	GRCGYC	2 cut(s)	302, 311
BsaJI	CCNNGG	3 cut(s)	566, 674, 791
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	1108
Bse1I	ACTGG	3 cut(s)	394, 642, 757
BseBI	CCWGG	3 cut(s)	389, 409, 579
BseDI	CCNNGG	3 cut(s)	566, 674, 791
BseGI	GGATG	2 cut(s)	613, 937
BseLI	CCNNNNNNNGG	1 cut(s)	1108
BseNI	ACTGG	3 cut(s)	394, 642, 757
BseRI	GAGGAG	6 cut(s)	26, 29, 32, 35, 76, 221
BseXI	GCAGC	2 cut(s)	203, 311
BseYI	CCCAGC	2 cut(s)	416, 908
BsgI	GTGCAG	1 cut(s)	1091
Bsh1236I	CGCG	2 cut(s)	261, 380
Bsh1285I	CGRYCG	2 cut(s)	259, 318
BshFI	GGCC	6 cut(s)	384, 392, 407, 415, 713, 913
BsiEI	CGRYCG	2 cut(s)	259, 318
BsiHKAI	GWGCWC	1 cut(s)	862
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	367
BslFI	GGGAC	2 cut(s)	21, 362
BslI	CCNNNNNNNGG	1 cut(s)	1108
BsmAI	GTCTC	1 cut(s)	1145
BsmFI	GGGAC	2 cut(s)	21, 362
BsnI	GGCC	6 cut(s)	384, 392, 407, 415, 713, 913
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	862
Bsp143I	GATC	3 cut(s)	315, 424, 979
BspANI	GGCC	6 cut(s)	384, 392, 407, 415, 713, 913
BspFNI	CGCG	2 cut(s)	261, 380
BspLI	GGNNCC	3 cut(s)	9, 10, 1054
BspMAI	CTGCAG	1 cut(s)	329
BsrBI	CCGCTC	2 cut(s)	229, 472
BsrI	ACTGG	3 cut(s)	394, 642, 757
BssECI	CCNNGG	3 cut(s)	566, 674, 791
BssMI	GATC	3 cut(s)	315, 424, 979
BssNI	GRCGYC	2 cut(s)	302, 311
BssSI	CACGAG	2 cut(s)	428, 816
BssT1I	CCWWGG	3 cut(s)	566, 674, 791
Bst2BI	CACGAG	2 cut(s)	428, 816
Bst2UI	CCWGG	3 cut(s)	389, 409, 579
Bst4CI	ACNGT	3 cut(s)	21, 972, 1087
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	2 cut(s)	302, 311
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstC8I	GCNNGC	2 cut(s)	322, 382
BstDEI	CTNAG	1 cut(s)	863
BstF5I	GGATG	2 cut(s)	613, 937
BstFNI	CGCG	2 cut(s)	261, 380
BstKTI	GATC	3 cut(s)	318, 427, 982
BstMAI	GTCTC	1 cut(s)	1145
BstMBI	GATC	3 cut(s)	315, 424, 979
BstMCI	CGRYCG	2 cut(s)	259, 318
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 304, 310, 333, 866
BstNI	CCWGG	3 cut(s)	389, 409, 579
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	3 cut(s)	387, 407, 577
BstSFI	CTRYAG	1 cut(s)	325
BstUI	CGCG	2 cut(s)	261, 380
BstV1I	GCAGC	2 cut(s)	203, 311
BstV2I	GAAGAC	1 cut(s)	908
BstXI	CCANNNNNNTGG	1 cut(s)	641
BsuRI	GGCC	6 cut(s)	384, 392, 407, 415, 713, 913
BtsCI	GGATG	2 cut(s)	613, 937
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 401
Cac8I	GCNNGC	2 cut(s)	322, 382
CaiI	CAGNNNCTG	1 cut(s)	661
Cfr13I	GGNCC	7 cut(s)	8, 181, 382, 391, 414, 911, 1053
CseI	GACGC	3 cut(s)	250, 310, 319
Csp6I	GTAC	2 cut(s)	631, 697
CviAII	CATG	3 cut(s)	481, 742, 851
CviQI	GTAC	2 cut(s)	631, 697
DdeI	CTNAG	1 cut(s)	863
DpnI	GATC	3 cut(s)	317, 426, 981
DpnII	GATC	3 cut(s)	315, 424, 979
DraIII	CACNNNGTG	1 cut(s)	866
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	3 cut(s)	566, 674, 791
Eco147I	AGGCCT	1 cut(s)	407
Eco47I	GGWCC	3 cut(s)	8, 181, 1053
Eco57I	CTGAAG	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	401
EcoO109I	RGGNCCY	2 cut(s)	8, 181
EcoRII	CCWGG	3 cut(s)	387, 407, 577
EcoT14I	CCWWGG	3 cut(s)	566, 674, 791
ErhI	CCWWGG	3 cut(s)	566, 674, 791
FaeI	CATG	3 cut(s)	484, 745, 854
FaqI	GGGAC	2 cut(s)	21, 362
FatI	CATG	3 cut(s)	480, 741, 850
FauI	CCCGC	2 cut(s)	221, 373
Fnu4HI	GCNGC	6 cut(s)	217, 237, 240, 305, 325, 470
FokI	GGATG	2 cut(s)	620, 944
Fsp4HI	GCNGC	6 cut(s)	217, 237, 240, 305, 325, 470
GluI	GCNGC	6 cut(s)	217, 237, 240, 305, 325, 470
GsaI	CCCAGC	2 cut(s)	420, 912
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	6 cut(s)	384, 392, 407, 415, 713, 913
HapII	CCGG	1 cut(s)	367
HgaI	GACGC	3 cut(s)	250, 310, 319
Hin1I	GRCGYC	2 cut(s)	302, 311
Hin1II	CATG	3 cut(s)	484, 745, 854
HinfI	GANTC	8 cut(s)	203, 331, 370, 493, 621, 917, 1064, 1153
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	2 cut(s)	134, 157
Hpy166II	GTNNAC	3 cut(s)	265, 584, 1056
Hpy188I	TCNGA	5 cut(s)	256, 375, 424, 498, 1007
Hpy188III	TCNNGA	5 cut(s)	428, 490, 944, 1019, 1061
Hpy8I	GTNNAC	3 cut(s)	265, 584, 1056
Hpy99I	CGWCG	3 cut(s)	304, 313, 446
HpyAV	CCTTC	2 cut(s)	76, 178
HpyCH4III	ACNGT	3 cut(s)	21, 972, 1087
HpyCH4V	TGCA	4 cut(s)	327, 361, 967, 1072
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 304, 310, 333, 866
HpyF3I	CTNAG	1 cut(s)	863
Hsp92I	GRCGYC	2 cut(s)	302, 311
Hsp92II	CATG	3 cut(s)	484, 745, 854
KflI	GGGWCCC	1 cut(s)	8
Kzo9I	GATC	3 cut(s)	315, 424, 979
LmnI	GCTCC	4 cut(s)	39, 234, 425, 548
Lsp1109I	GCAGC	2 cut(s)	203, 311
LweI	GCATC	1 cut(s)	871
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	3 cut(s)	317, 426, 981
MbiI	CCGCTC	2 cut(s)	229, 472
MboI	GATC	3 cut(s)	315, 424, 979
MboII	GAAGA	5 cut(s)	40, 61, 461, 790, 913
MfeI	CAATTG	1 cut(s)	602
MhlI	GDGCHC	1 cut(s)	862
MluCI	AATT	9 cut(s)	153, 160, 341, 505, 526, 602, 803, 892, 1159
MlyI	GAGTC	5 cut(s)	197, 340, 364, 615, 1147
MmeI	TCCRAC	1 cut(s)	279
MroXI	GAANNNNTTC	2 cut(s)	683, 1014
MseI	TTAA	4 cut(s)	132, 723, 801, 828
MslI	CAYNNNNRTG	2 cut(s)	816, 879
MspA1I	CMGCKG	2 cut(s)	216, 908
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	3 cut(s)	389, 409, 579
MunI	CAATTG	1 cut(s)	602
MvaI	CCWGG	3 cut(s)	389, 409, 579
MvnI	CGCG	2 cut(s)	261, 380
MwoI	GCNNNNNNNGC	5 cut(s)	31, 304, 310, 333, 866
NdeII	GATC	3 cut(s)	315, 424, 979
NlaIII	CATG	3 cut(s)	484, 745, 854
NlaIV	GGNNCC	3 cut(s)	9, 10, 1054
NspI	RCATGY	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	407
PciI	ACATGT	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 441
PdmI	GAANNNNTTC	2 cut(s)	683, 1014
PfeI	GAWTC	3 cut(s)	493, 917, 1064
PflFI	GACNNNGTC	2 cut(s)	260, 353
PkrI	GCNGC	6 cut(s)	218, 238, 241, 306, 326, 471
Ple19I	CGATCG	1 cut(s)	318
PleI	GAGTC	5 cut(s)	197, 339, 364, 615, 1147
PpsI	GAGTC	5 cut(s)	197, 339, 364, 615, 1147
PpuMI	RGGWCCY	2 cut(s)	8, 181
PscI	ACATGT	1 cut(s)	480
Psp5II	RGGWCCY	2 cut(s)	8, 181
Psp6I	CCWGG	3 cut(s)	387, 407, 577
PspFI	CCCAGC	2 cut(s)	416, 908
PspGI	CCWGG	3 cut(s)	387, 407, 577
PspN4I	GGNNCC	3 cut(s)	9, 10, 1054
PspPI	GGNCC	7 cut(s)	8, 181, 382, 391, 414, 911, 1053
PspPPI	RGGWCCY	2 cut(s)	8, 181
PspXI	VCTCGAGB	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	329
PstNI	CAGNNNCTG	1 cut(s)	661
PsyI	GACNNNGTC	2 cut(s)	260, 353
PvuI	CGATCG	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	2 cut(s)	632, 698
RsaNI	GTAC	2 cut(s)	631, 697
RseI	CAYNNNNRTG	2 cut(s)	816, 879
SaqAI	TTAA	4 cut(s)	132, 723, 801, 828
SatI	GCNGC	6 cut(s)	217, 237, 240, 305, 325, 470
Sau3AI	GATC	3 cut(s)	315, 424, 979
Sau96I	GGNCC	7 cut(s)	8, 181, 382, 391, 414, 911, 1053
SchI	GAGTC	5 cut(s)	197, 340, 364, 615, 1147
ScrFI	CCNGG	3 cut(s)	389, 409, 579
SduI	GDGCHC	1 cut(s)	862
SfaNI	GCATC	1 cut(s)	871
SfcI	CTRYAG	1 cut(s)	325
Sfr274I	CTCGAG	1 cut(s)	401
SinI	GGWCC	3 cut(s)	8, 181, 1053
SlaI	CTCGAG	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	816, 879
SmlI	CTYRAG	3 cut(s)	401, 488, 983
SmoI	CTYRAG	3 cut(s)	401, 488, 983
Sse9I	AATT	9 cut(s)	153, 160, 341, 505, 526, 602, 803, 892, 1159
SseBI	AGGCCT	1 cut(s)	407
SspI	AATATT	1 cut(s)	1014
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	3 cut(s)	387, 407, 577
StyI	CCWWGG	3 cut(s)	566, 674, 791
TaaI	ACNGT	3 cut(s)	21, 972, 1087
TaqI	TCGA	2 cut(s)	201, 402
TasI	AATT	9 cut(s)	153, 160, 341, 505, 526, 602, 803, 892, 1159
TauI	GCSGC	4 cut(s)	239, 242, 307, 472
TfiI	GAWTC	3 cut(s)	493, 917, 1064
Tru1I	TTAA	4 cut(s)	132, 723, 801, 828
Tru9I	TTAA	4 cut(s)	132, 723, 801, 828
TscAI	CASTG	2 cut(s)	36, 401
TseI	GCWGC	2 cut(s)	216, 324
TspDTI	ATGAA	7 cut(s)	160, 787, 796, 800, 867, 948, 1059
TspRI	CASTG	2 cut(s)	36, 401
Tth111I	GACNNNGTC	2 cut(s)	260, 353
VpaK11BI	GGWCC	3 cut(s)	8, 181, 1053
XapI	RAATTY	4 cut(s)	153, 341, 803, 1159
XceI	RCATGY	1 cut(s)	484
XhoI	CTCGAG	1 cut(s)	401
XmnI	GAANNNNTTC	2 cut(s)	683, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.