Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002619

Physical Location & Seq

Genomic Coordinates Forward (+)

16079733 .. 16081049

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g19110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAATGACACAACACGACTCTTCTTGTACCAACTAGTTGGCACTTGGGGTCAGCTTCTCTTTCCTAAACCTTGGAAAGAGTTCAGGGTGTGGTATGACAATCACAAGGCAAAAGGCATTAAGCCATTTCTTGATGGCATGGTGACGACAGGGTGGTATAAAAAGATGGGAGAGAAGATATGGACACCTTGGTTCATTAAATTCATTCATACTCGTGGCTACTTTAATATCTACACCAATTTTTTGCAAGAGAGAGCGCTTAGTGTCTCTCACAGGGATGCTGGTGTTAATTATGGGAAAACAGCTGGGCCTGATTCCCATATACTGTATGAAAGTTCTCTTGATTCGGATTTTTGGGATATGCAACCGTTGAGTGATCTTAAGTGGTATGATTTTTGTTTCAGAGAAATATTTCCCGACACAGTTGTTGAGAGCTTTGATGAACTCGGGTCTGTTCTTAATTCTGTGCAGAAACATGACACTGTTATCATAGTGAGCCTATTTGGGGTATCCGAGCTGGCAATAAGGAACTTGTTCTGCCACTTTGAGAGGCTAAATATATGGCACTATGTACTTGTTGGCCCCGAATCTGATTTCGTGTTTGATCTGGCAAGAAGAGGATATCCGGTGATTGGTACAAACCAGTTTCTGAAGAGTGTAGGAGCTTACAAATTGATGTCTCTCCAAGATTCACATGCGGAAATGATCAAGGCCTATGTATTAAGAAAGTGTTTAGAATCTAGGTACAATGCCTGGGTGGTGGACGGGAACATACTTCCTGTCAGTAGTGACCTTTTTGTTGAGTCTGATCCCTCATACGATTTCTACATAGGGAAGAGCTCGGAACTTTTCTTTGCCAGTAGATCTTTCGCTCAGAAAGTTGATGGTGATGATTTTATATCCAAATTTGCAACGATGGCGAGCTCGTTGCTAGTTAAAAGGCAGAGCACAAGTTTTGGTTTCATAATGACAAAGCTTTTGGAACAGAAGGGTGTGAAGGTCAAGAGTCTCAACGAGACAAGCTTCGGTCTCAAGATCGATTACAGTAATGTTAATCAATCATTGGGGGATGGAAAACAGATGGTATTTTGGTCTAGTGATACGGCTTCAGATTTAGTTCAGAAGCGGCTTCAAGAATTGGGTATTTGGATTGTAAATGATGACTTGTCTTGCAAGGCTGTTGTTTGTCATCAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

45.9

Weight (kDa)

6.32

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12260
fragaria_vesca	FvH4_5g29830 FvH4_5g29830 FvH4_7g06910 FvH4_7g06910 FvH4_7g06910 FvH4_7g06910 FvH4_7g06910
malus_domestica	MD10G1340300.v1.1 MD13G1224500.v1.1 MD13G1224600.v1.1
prunus_persica	Prupe.1G051200_v2.0.a1 Prupe.1G051200_v2.0.a1
pyrus_communis	pycom13g19820 pycom16g19110
rosa_chinensis	RchiOBHm_Chr1g0336841 RchiOBHm_Chr7g0223431
rosa_laevigata	RLG00000001965 RLG00000029331 RLG00000029333
rosa_multiflora	Rmu_co8498753.1_g000002 Rmu_sc0007408.1_g000014
rosa_roxburghii	Rroxscaffold_3G00235810 Rroxscaffold_4G00315310
rosa_rugosa	Rorug01G0128200 Rorug07G0216600 Rorug07G0216600 Rorug07G0216600 Rorug07G0216600
rosa_samantha	Rh1AG149000 Rh1BG117100 Rh1CG140300 Rh1DG156300 Rh7AG360300 Rh7BG350400 Rh7CG378900 Rh7DG355800
rosa_wichuraiana	Rw1G012050 Rw1G012060 Rw7G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	698, 1126
AclWI	GGATC	1 cut(s)	803
AcsI	RAATTY	2 cut(s)	200, 905
AcuI	CTGAAG	2 cut(s)	671, 1092
AfaI	GTAC	4 cut(s)	29, 573, 637, 746
AfeI	AGCGCT	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	505, 632
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	1133
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	752
AluBI	AGCT	9 cut(s)	55, 305, 435, 517, 665, 840, 924, 976, 1023
AluI	AGCT	9 cut(s)	55, 305, 435, 517, 665, 840, 924, 976, 1023
Alw21I	GWGCWC	3 cut(s)	842, 926, 950
Alw26I	GTCTC	5 cut(s)	271, 684, 1010, 1013, 1034
AlwI	GGATC	1 cut(s)	803
AlwNI	CAGNNNCTG	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	446
Aor51HI	AGCGCT	1 cut(s)	258
AoxI	GGCC	3 cut(s)	308, 580, 711
ApoI	RAATTY	2 cut(s)	200, 905
ArsI	GACNNNNNNTTYG	2 cut(s)	961, 993
Asp700I	GAANNNNTTC	3 cut(s)	80, 411, 533
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	308, 581
AsuHPI	GGTGA	3 cut(s)	154, 640, 899
AvaI	CYCGRG	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	842, 926
BauI	CACGAG	1 cut(s)	213
Bbv12I	GWGCWC	3 cut(s)	842, 926, 950
BccI	CCATC	6 cut(s)	128, 160, 878, 910, 1064, 1075
BceAI	ACGGC	1 cut(s)	1119
BcgI	CGANNNNNNTGC	2 cut(s)	910, 944
BciT130I	CCWGG	1 cut(s)	754
BciVI	GTATCC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	705
BcoDI	GTCTC	5 cut(s)	271, 684, 1010, 1013, 1034
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	4 cut(s)	35, 741, 932, 1095
BfoI	RGCGCY	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	863
BisI	GCNGC	1 cut(s)	1127
BlsI	GCNGC	1 cut(s)	1128
Bme1390I	CCNGG	1 cut(s)	754
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	308, 581
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	1 cut(s)	754
BmsI	GCATC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	1016
Bsa29I	ATCGAT	1 cut(s)	1038
BsaI	GGTCTC	1 cut(s)	1034
BsaJI	CCNNGG	3 cut(s)	71, 188, 753
BsaWI	WCCGGW	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 632
Bse1I	ACTGG	2 cut(s)	643, 858
BseBI	CCWGG	1 cut(s)	754
BseCI	ATCGAT	1 cut(s)	1038
BseDI	CCNNGG	3 cut(s)	71, 188, 753
BseGI	GGATG	2 cut(s)	283, 1075
BseLI	CCNNNNNNNGG	2 cut(s)	505, 632
BseMII	CTCAG	1 cut(s)	887
BseNI	ACTGG	2 cut(s)	643, 858
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	488
BshFI	GGCC	3 cut(s)	310, 582, 713
BshVI	ATCGAT	1 cut(s)	1038
BsiHKAI	GWGCWC	3 cut(s)	842, 926, 950
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	505, 632
BsmAI	GTCTC	5 cut(s)	271, 684, 1010, 1013, 1034
BsnI	GGCC	3 cut(s)	310, 582, 713
Bso31I	GGTCTC	1 cut(s)	1034
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	3 cut(s)	842, 926, 950
Bsp143I	GATC	6 cut(s)	376, 604, 705, 808, 863, 1035
BspACI	CCGC	2 cut(s)	698, 1126
BspANI	GGCC	3 cut(s)	310, 582, 713
BspCNI	CTCAG	1 cut(s)	886
BspDI	ATCGAT	1 cut(s)	1038
BspLI	GGNNCC	1 cut(s)	583
BspPI	GGATC	1 cut(s)	803
BspQI	GCTCTTC	1 cut(s)	830
BspTI	CTTAAG	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	1034
BsrI	ACTGG	2 cut(s)	643, 858
BssECI	CCNNGG	3 cut(s)	71, 188, 753
BssMI	GATC	6 cut(s)	376, 604, 705, 808, 863, 1035
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	71, 188
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	5 cut(s)	327, 369, 424, 484, 1046
Bst6I	CTCTTC	4 cut(s)	26, 610, 647, 830
BstAFI	CTTAAG	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	519, 922
BstDEI	CTNAG	2 cut(s)	260, 873
BstF5I	GGATG	2 cut(s)	283, 1075
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	6 cut(s)	379, 607, 708, 811, 866, 1038
BstMAI	GTCTC	5 cut(s)	271, 684, 1010, 1013, 1034
BstMBI	GATC	6 cut(s)	376, 604, 705, 808, 863, 1035
BstMWI	GCNNNNNNNGC	1 cut(s)	917
BstNI	CCWGG	1 cut(s)	754
BstNSI	RCATGY	1 cut(s)	698
BstSCI	CCNGG	1 cut(s)	752
BstX2I	RGATCY	1 cut(s)	863
BstXI	CCANNNNNNTGG	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	863
Bsu15I	ATCGAT	1 cut(s)	1038
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	310, 582, 713
BsuTUI	ATCGAT	1 cut(s)	1038
BtsCI	GGATG	2 cut(s)	283, 1075
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	2 cut(s)	519, 922
CaiI	CAGNNNCTG	1 cut(s)	649
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	308, 581
ClaI	ATCGAT	1 cut(s)	1038
Csp6I	GTAC	4 cut(s)	28, 572, 636, 745
CviAII	CATG	3 cut(s)	139, 476, 695
CviQI	GTAC	4 cut(s)	28, 572, 636, 745
DdeI	CTNAG	2 cut(s)	260, 873
DpnI	GATC	6 cut(s)	378, 606, 707, 810, 865, 1037
DpnII	GATC	6 cut(s)	376, 604, 705, 808, 863, 1035
Eam1104I	CTCTTC	4 cut(s)	26, 610, 647, 830
EarI	CTCTTC	4 cut(s)	26, 610, 647, 830
Ecl136II	GAGCTC	2 cut(s)	840, 924
Eco130I	CCWWGG	2 cut(s)	71, 188
Eco147I	AGGCCT	1 cut(s)	713
Eco24I	GRGCYC	2 cut(s)	842, 926
Eco31I	GGTCTC	1 cut(s)	1034
Eco32I	GATATC	1 cut(s)	623
Eco47III	AGCGCT	1 cut(s)	258
Eco53kI	GAGCTC	2 cut(s)	840, 924
Eco57I	CTGAAG	2 cut(s)	671, 1092
Eco88I	CYCGRG	1 cut(s)	446
EcoICRI	GAGCTC	2 cut(s)	840, 924
EcoRII	CCWGG	1 cut(s)	752
EcoRV	GATATC	1 cut(s)	623
EcoT14I	CCWWGG	2 cut(s)	71, 188
EcoT38I	GRGCYC	2 cut(s)	842, 926
ErhI	CCWWGG	2 cut(s)	71, 188
FaeI	CATG	3 cut(s)	142, 479, 698
FatI	CATG	3 cut(s)	138, 475, 694
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	1 cut(s)	1127
FokI	GGATG	2 cut(s)	290, 1082
FriOI	GRGCYC	2 cut(s)	842, 926
Fsp4HI	GCNGC	1 cut(s)	1127
FspBI	CTAG	4 cut(s)	35, 741, 932, 1095
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	1127
GsaI	CCCAGC	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	310, 582, 713
HapII	CCGG	1 cut(s)	626
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	3 cut(s)	142, 479, 698
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	2 cut(s)	974, 1021
HinfI	GANTC	8 cut(s)	18, 314, 344, 587, 689, 737, 803, 1006
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	3 cut(s)	154, 640, 899
Hpy166II	GTNNAC	1 cut(s)	763
Hpy188III	TCNNGA	6 cut(s)	131, 341, 416, 1003, 1033, 1133
Hpy8I	GTNNAC	1 cut(s)	763
HpyAV	CCTTC	2 cut(s)	982, 991
HpyCH4III	ACNGT	5 cut(s)	327, 369, 424, 484, 1046
HpyCH4V	TGCA	5 cut(s)	247, 364, 469, 911, 1173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	917
HpyF3I	CTNAG	2 cut(s)	260, 873
Hsp92II	CATG	3 cut(s)	142, 479, 698
HspAI	GCGC	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	6 cut(s)	376, 604, 705, 808, 863, 1035
LguI	GCTCTTC	1 cut(s)	830
LmnI	GCTCC	1 cut(s)	662
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	4 cut(s)	35, 741, 932, 1095
MaeIII	GTNAC	2 cut(s)	142, 788
MalI	GATC	6 cut(s)	378, 606, 707, 810, 865, 1037
MboI	GATC	6 cut(s)	376, 604, 705, 808, 863, 1035
MboII	GAAGA	5 cut(s)	13, 187, 627, 664, 847
MflI	RGATCY	1 cut(s)	863
MhlI	GDGCHC	3 cut(s)	842, 926, 950
MluCI	AATT	7 cut(s)	200, 238, 289, 460, 671, 905, 1136
MlyI	GAGTC	3 cut(s)	12, 812, 1015
MnlI	CCTC	3 cut(s)	543, 611, 823
MroXI	GAANNNNTTC	3 cut(s)	80, 411, 533
MseI	TTAA	9 cut(s)	120, 198, 225, 288, 381, 459, 722, 936, 1053
MslI	CAYNNNNRTG	2 cut(s)	213, 276
MspA1I	CMGCKG	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	754
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	1 cut(s)	917
NdeII	GATC	6 cut(s)	376, 604, 705, 808, 863, 1035
NlaIII	CATG	3 cut(s)	142, 479, 698
NlaIV	GGNNCC	1 cut(s)	583
NmuCI	GTSAC	2 cut(s)	142, 788
NspI	RCATGY	1 cut(s)	698
PceI	AGGCCT	1 cut(s)	713
PciSI	GCTCTTC	1 cut(s)	830
PdmI	GAANNNNTTC	3 cut(s)	80, 411, 533
PfeI	GAWTC	5 cut(s)	314, 344, 587, 689, 737
PkrI	GCNGC	1 cut(s)	1128
PleI	GAGTC	3 cut(s)	12, 811, 1014
PpsI	GAGTC	3 cut(s)	12, 811, 1014
Psp124BI	GAGCTC	2 cut(s)	842, 926
Psp6I	CCWGG	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	2 cut(s)	308, 581
PstNI	CAGNNNCTG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	863
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	4 cut(s)	29, 573, 637, 746
RsaNI	GTAC	4 cut(s)	28, 572, 636, 745
RseI	CAYNNNNRTG	2 cut(s)	213, 276
SacI	GAGCTC	2 cut(s)	842, 926
SapI	GCTCTTC	1 cut(s)	830
SaqAI	TTAA	9 cut(s)	120, 198, 225, 288, 381, 459, 722, 936, 1053
SatI	GCNGC	1 cut(s)	1127
Sau3AI	GATC	6 cut(s)	376, 604, 705, 808, 863, 1035
Sau96I	GGNCC	2 cut(s)	308, 581
SchI	GAGTC	3 cut(s)	12, 812, 1015
ScrFI	CCNGG	1 cut(s)	754
SduI	GDGCHC	3 cut(s)	842, 926, 950
SfaNI	GCATC	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	213, 276
SmlI	CTYRAG	2 cut(s)	380, 1031
SmoI	CTYRAG	2 cut(s)	380, 1031
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	7 cut(s)	200, 238, 289, 460, 671, 905, 1136
SseBI	AGGCCT	1 cut(s)	713
SsiI	CCGC	2 cut(s)	698, 1126
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	4 cut(s)	35, 741, 932, 1095
SstI	GAGCTC	2 cut(s)	842, 926
StuI	AGGCCT	1 cut(s)	713
StyD4I	CCNGG	1 cut(s)	752
StyI	CCWWGG	2 cut(s)	71, 188
TaaI	ACNGT	5 cut(s)	327, 369, 424, 484, 1046
TaqI	TCGA	1 cut(s)	1038
TaqII	GACCGA	1 cut(s)	1016
TasI	AATT	7 cut(s)	200, 238, 289, 460, 671, 905, 1136
TatI	WGTACW	1 cut(s)	571
TauI	GCSGC	1 cut(s)	1129
TfiI	GAWTC	5 cut(s)	314, 344, 587, 689, 737
Tru1I	TTAA	9 cut(s)	120, 198, 225, 288, 381, 459, 722, 936, 1053
Tru9I	TTAA	9 cut(s)	120, 198, 225, 288, 381, 459, 722, 936, 1053
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	2 cut(s)	142, 788
Tsp45I	GTSAC	2 cut(s)	142, 788
TspDTI	ATGAA	7 cut(s)	17, 184, 193, 197, 345, 456, 952
TspRI	CASTG	1 cut(s)	487
Vha464I	CTTAAG	1 cut(s)	380
XapI	RAATTY	2 cut(s)	200, 905
XceI	RCATGY	1 cut(s)	698
XmnI	GAANNNNTTC	3 cut(s)	80, 411, 533
XspI	CTAG	4 cut(s)	35, 741, 932, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.