Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8498753.1

Orthogroup ID

OG0002619

Physical Location & Seq

Genomic Coordinates Reverse (-)

1486 .. 2541

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8498753.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atgggagagaagatatggacaccttggttcattaaattcattcatactcgtggctattttaatatctacaccaactttttacatgaaagagcacttagtgcctctcacagagatgctggtgtcaattatgggaagacagctgggcctgattcacatatattggatgaaagttctcttgatttgaagttttgggatatgcaaccgttgagtgatctcaagtggtatgatttttgtttcagagaaatatttcctgaaagagttgttgtgagccttgatgaacttgggtccactcttgattctgtgcagaaacacaacaccgttattgttgttagcctgtttggggctaaagagatggtaataagaaacctactctgccattttgagactctaaatttgctgaattatgtacttattggccccgagtctgaactcttgttcgatctggcaagaagaggccatccagtgatcgctacgaaccgctttctggagagtgtaggagcgcataaattgatttccatgaagcattctcatgtgcacattatcaatgaaatattagtcaaggtctatgtattacagaagtgtttacaatctgggtacagttcctggatggtggatgggaacatgcttccagtcagcagtgacgcatttgtcgagtcggatcactcatatgatttctatataggtaaaacctcagaacttttctttgccagtggattatcttctactcgaaaggtttgggatgatgattttatatcaaaatttgcaatgatggtgaactcttttctagttaaacgacagagcataagtttcggttatgtaatggcagagattttgcaacagaaaaaaggtgtgagggtgaagaatcttgatgagacaagctttggtgttaggatcgataacagtagggtcaatcaatctttaggtgatggaaagcaggtggctttctggtcacatgatatggcttcagatttagttcgacaacggcttcaggaactgggtgtttggactgtggatgacgacttttcttgtaaggctgttatttgtcaccaatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

40.17

Weight (kDa)

6.15

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12260
fragaria_vesca	FvH4_5g29830 FvH4_5g29830 FvH4_7g06910 FvH4_7g06910 FvH4_7g06910 FvH4_7g06910 FvH4_7g06910
malus_domestica	MD10G1340300.v1.1 MD13G1224500.v1.1 MD13G1224600.v1.1
prunus_persica	Prupe.1G051200_v2.0.a1 Prupe.1G051200_v2.0.a1
pyrus_communis	pycom13g19820 pycom16g19110
rosa_chinensis	RchiOBHm_Chr1g0336841 RchiOBHm_Chr7g0223431
rosa_laevigata	RLG00000001965 RLG00000029331 RLG00000029333
rosa_multiflora	Rmu_co8498753.1_g000002 Rmu_sc0007408.1_g000014
rosa_roxburghii	Rroxscaffold_3G00235810 Rroxscaffold_4G00315310
rosa_rugosa	Rorug01G0128200 Rorug07G0216600 Rorug07G0216600 Rorug07G0216600 Rorug07G0216600
rosa_samantha	Rh1AG149000 Rh1BG117100 Rh1CG140300 Rh1DG156300 Rh7AG360300 Rh7BG350400 Rh7CG378900 Rh7DG355800
rosa_wichuraiana	Rw1G012050 Rw1G012060 Rw7G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	925
AasI	GACNNNNNNGTC	1 cut(s)	647
Acc36I	ACCTGC	1 cut(s)	925
AciI	CCGC	1 cut(s)	478
AclWI	GGATC	2 cut(s)	666, 899
AcsI	RAATTY	3 cut(s)	35, 391, 758
AcuI	CTGAAG	2 cut(s)	948, 971
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	2 cut(s)	408, 596
AfiI	CCNNNNNNNGG	2 cut(s)	340, 484
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	602
AluBI	AGCT	2 cut(s)	140, 879
AluI	AGCT	2 cut(s)	140, 879
Alw21I	GWGCWC	2 cut(s)	94, 537
Alw26I	GTCTC	2 cut(s)	377, 866
Alw44I	GTGCAC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	666, 899
AlwNI	CAGNNNCTG	2 cut(s)	603, 994
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	3 cut(s)	143, 415, 454
ApaLI	GTGCAC	1 cut(s)	533
ApoI	RAATTY	3 cut(s)	35, 391, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	376, 408
Asp700I	GAANNNNTTC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	3 cut(s)	143, 285, 416
AsuHPI	GGTGA	4 cut(s)	784, 868, 935, 1037
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	2 cut(s)	94, 537
BccI	CCATC	6 cut(s)	346, 465, 601, 608, 763, 920
BceAI	ACGGC	1 cut(s)	998
BcgI	CGANNNNNNTGC	2 cut(s)	790, 824
BciT130I	CCWGG	1 cut(s)	604
BcoDI	GTCTC	2 cut(s)	377, 866
BfaI	CTAG	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	925
Bme1390I	CCNGG	1 cut(s)	604
Bme18I	GGWCC	1 cut(s)	285
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	3 cut(s)	143, 285, 416
BmiI	GGNNCC	2 cut(s)	286, 418
BmrFI	CCNGG	1 cut(s)	604
BmrI	ACTGGG	1 cut(s)	1004
BmsI	GCATC	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	1004
BpiI	GAAGAC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	894
BsaJI	CCNNGG	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 484
Bse1I	ACTGG	4 cut(s)	461, 629, 708, 999
Bse3DI	GCAATG	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	604
BseCI	ATCGAT	1 cut(s)	894
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	6 cut(s)	169, 457, 612, 619, 745, 1018
BseLI	CCNNNNNNNGG	2 cut(s)	340, 484
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	4 cut(s)	461, 629, 708, 999
BseSI	GKGCMC	1 cut(s)	537
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	3 cut(s)	145, 417, 456
BshVI	ATCGAT	1 cut(s)	894
BsiHKAI	GWGCWC	2 cut(s)	94, 537
BsiHKCI	CYCGRG	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	340, 484
BsmAI	GTCTC	2 cut(s)	377, 866
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	3 cut(s)	145, 417, 456
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	94, 537
Bsp143I	GATC	5 cut(s)	211, 439, 465, 658, 891
BspACI	CCGC	1 cut(s)	478
BspANI	GGCC	3 cut(s)	145, 417, 456
BspCNI	CTCAG	1 cut(s)	704
BspDI	ATCGAT	1 cut(s)	894
BspLI	GGNNCC	2 cut(s)	286, 418
BspMI	ACCTGC	1 cut(s)	925
BspPI	GGATC	2 cut(s)	666, 899
BsrDI	GCAATG	1 cut(s)	771
BsrI	ACTGG	4 cut(s)	461, 629, 708, 999
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	5 cut(s)	211, 439, 465, 658, 891
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	604
Bst4CI	ACNGT	5 cut(s)	204, 319, 599, 902, 1009
Bst6I	CTCTTC	1 cut(s)	445
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	95, 691
BstF5I	GGATG	6 cut(s)	169, 457, 612, 619, 745, 1018
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	5 cut(s)	214, 442, 468, 661, 894
BstMAI	GTCTC	2 cut(s)	377, 866
BstMBI	GATC	5 cut(s)	211, 439, 465, 658, 891
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	604
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	602
BstSLI	GKGCMC	1 cut(s)	537
BstV2I	GAAGAC	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	894
BsuRI	GGCC	3 cut(s)	145, 417, 456
BsuTUI	ATCGAT	1 cut(s)	894
BtsCI	GGATG	6 cut(s)	169, 457, 612, 619, 745, 1018
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	3 cut(s)	468, 643, 715
BveI	ACCTGC	1 cut(s)	925
CaiI	CAGNNNCTG	2 cut(s)	603, 994
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	3 cut(s)	143, 285, 416
ClaI	ATCGAT	1 cut(s)	894
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	2 cut(s)	407, 595
CviAII	CATG	5 cut(s)	83, 517, 530, 622, 953
CviQI	GTAC	2 cut(s)	407, 595
DdeI	CTNAG	2 cut(s)	95, 691
DpnI	GATC	5 cut(s)	213, 441, 467, 660, 893
DpnII	GATC	5 cut(s)	211, 439, 465, 658, 891
DraIII	CACNNNGTG	1 cut(s)	98
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	948, 971
Eco88I	CYCGRG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	602
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	5 cut(s)	86, 520, 533, 625, 956
FatI	CATG	5 cut(s)	82, 516, 529, 621, 952
FauNDI	CATATG	1 cut(s)	667
FokI	GGATG	6 cut(s)	176, 444, 619, 626, 752, 1025
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	1 cut(s)	501
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	3 cut(s)	145, 417, 456
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	5 cut(s)	86, 520, 533, 625, 956
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	1 cut(s)	877
HinfI	GANTC	6 cut(s)	149, 296, 385, 422, 653, 862
HphI	GGTGA	4 cut(s)	784, 868, 935, 1037
Hpy166II	GTNNAC	4 cut(s)	288, 535, 584, 775
Hpy188I	TCNGA	5 cut(s)	239, 427, 658, 694, 967
Hpy188III	TCNNGA	6 cut(s)	176, 251, 293, 485, 866, 989
Hpy8I	GTNNAC	4 cut(s)	288, 535, 584, 775
HpyCH4III	ACNGT	5 cut(s)	204, 319, 599, 902, 1009
HpyCH4V	TGCA	5 cut(s)	199, 304, 535, 764, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	95, 691
Hsp92II	CATG	5 cut(s)	86, 520, 533, 625, 956
HspAI	GCGC	1 cut(s)	500
Kzo9I	GATC	5 cut(s)	211, 439, 465, 658, 891
LmnI	GCTCC	1 cut(s)	497
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	785
MaeIII	GTNAC	3 cut(s)	638, 948, 1043
MalI	GATC	5 cut(s)	213, 441, 467, 660, 893
MboI	GATC	5 cut(s)	211, 439, 465, 658, 891
MboII	GAAGA	5 cut(s)	22, 145, 462, 711, 871
MhlI	GDGCHC	2 cut(s)	94, 537
MluCI	AATT	6 cut(s)	35, 124, 391, 400, 506, 758
MlyI	GAGTC	3 cut(s)	379, 431, 662
MmeI	TCCRAC	1 cut(s)	636
MnlI	CCTC	4 cut(s)	112, 446, 700, 846
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	3 cut(s)	33, 60, 789
MslI	CAYNNNNRTG	4 cut(s)	48, 111, 528, 666
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	604
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	604
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	5 cut(s)	211, 439, 465, 658, 891
NlaIII	CATG	5 cut(s)	86, 520, 533, 625, 956
NlaIV	GGNNCC	2 cut(s)	286, 418
NmuCI	GTSAC	3 cut(s)	638, 948, 1043
NspI	RCATGY	1 cut(s)	625
PaqCI	CACCTGC	1 cut(s)	925
PcsI	WCGNNNNNNNCGW	1 cut(s)	648
PctI	GAATGC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	149, 296, 862
PfoI	TCCNGGA	1 cut(s)	602
PleI	GAGTC	3 cut(s)	379, 430, 661
PpsI	GAGTC	3 cut(s)	379, 430, 661
Psp6I	CCWGG	1 cut(s)	602
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	602
PspN4I	GGNNCC	2 cut(s)	286, 418
PspPI	GGNCC	3 cut(s)	143, 285, 416
PstNI	CAGNNNCTG	2 cut(s)	603, 994
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	2 cut(s)	408, 596
RsaNI	GTAC	2 cut(s)	407, 595
RseI	CAYNNNNRTG	4 cut(s)	48, 111, 528, 666
SaqAI	TTAA	3 cut(s)	33, 60, 789
Sau3AI	GATC	5 cut(s)	211, 439, 465, 658, 891
Sau96I	GGNCC	3 cut(s)	143, 285, 416
SchI	GAGTC	3 cut(s)	379, 431, 662
ScrFI	CCNGG	1 cut(s)	604
SduI	GDGCHC	2 cut(s)	94, 537
SfaNI	GCATC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	4 cut(s)	48, 111, 528, 666
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	6 cut(s)	35, 124, 391, 400, 506, 758
SsiI	CCGC	1 cut(s)	478
SspI	AATATT	2 cut(s)	246, 552
SspMI	CTAG	1 cut(s)	785
StyD4I	CCNGG	1 cut(s)	602
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	5 cut(s)	204, 319, 599, 902, 1009
TaqI	TCGA	5 cut(s)	438, 651, 727, 894, 976
TasI	AATT	6 cut(s)	35, 124, 391, 400, 506, 758
TatI	WGTACW	1 cut(s)	406
TfiI	GAWTC	3 cut(s)	149, 296, 862
Tru1I	TTAA	3 cut(s)	33, 60, 789
Tru9I	TTAA	3 cut(s)	33, 60, 789
TscAI	CASTG	3 cut(s)	468, 643, 715
TseFI	GTSAC	3 cut(s)	638, 948, 1043
Tsp45I	GTSAC	3 cut(s)	638, 948, 1043
TspDTI	ATGAA	8 cut(s)	19, 28, 32, 99, 180, 291, 533, 561
TspRI	CASTG	3 cut(s)	468, 643, 715
VneI	GTGCAC	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	3 cut(s)	35, 391, 758
XceI	RCATGY	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.