FvH4_5g30481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015636
Physical Location & Seq
Forward (+)
21345317 .. 21347126
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30481.t1

Sequence Viewer

Length: 810 bp
ATGGGTAATTGCGCGAGTGAACCGAAGACCAATGATTATGCATCACCAGCACCTGTGTTTAAGAATGAGGAGTTAACAGCACAACCTGATTATGATCGTGATGTATTGGTGAACACTAAGGAGACTAATGGGGATAAGCAACCCTCTCTTGGGGCCTTGCTTAAGGAGGAAGAAGAAAAGATGGTCCTAGTTCCCTTAAAACCAAAAGAAAAAGAGGTAGTAGTTGTGCCAAAAGAAACGAAGGTAGCGATTCAACCGAAAGAAAAAAAAGAAAAAGAAGAGCCTAAAACTACTACTGAGAAGAAAGAGGAGATAGTTGTCGAGCAAGTGAAAGCACATGAAGCAGATATAAAATCGGTACCAACAACTGCAATTACCCAAGAAGACAAGACTTTTGATGAGGAGAAGAAACTAGTAGAAGAGACAAACGAGATTAAGACATCAGCAAAAGAGATCGATGATATCAAGAAACCAGCAGAAGAGATTAATGATATCAAGAAACCAGTAGAAGAGATTGTTGAAATTAAGAAACCAACGAATGAGATTGTTGATATCAAGAAACCAGTCGAAGAAATCAAAGATATCGAGAAACCGGCAGAAGCGATTCATCATATCATCAAGAAACCAATTGAAGAGATTAAGGAGACTGATAAGAAACTCGAAGATATTAACGAGATAAAGAAAACTGAACAGATCAGTGACATAAAGAACCCCGAAGAGATCAATGAGGAAAATAAACCCAAAGAAAATGGTGTGGAGATCAAAAAACTAGAAATGAATGAGCAAACGTCGGAAAAACCTGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4694

Protein Analysis

270

Amino Acids

30.71

Weight (kDa)

4.85

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30481
malus_domestica MD08G1223500.v1.1 MD15G1417000.v1.1
prunus_persica Prupe.1G560900_v2.0.a1
pyrus_communis pycom15g36980
rosa_chinensis RchiOBHm_Chr7g0225161
rosa_laevigata RLG00000001842
rosa_multiflora Rmu_sc0000322.1_g000003 Rmu_sc0003737.1_g000006
rosa_roxburghii Rroxscaffold_3G00234180
rosa_rugosa Rorug07G0227700
rosa_samantha Rh7AG376000 Rh7BG362600 Rh7CG394600 Rh7DG373400
rosa_wichuraiana Rw7G031500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 358
AccB1I GGYRCC 1 cut(s) 358
AccII CGCG 1 cut(s) 14
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 149, 150
AflII CTTAAG 1 cut(s) 161
AgsI TTSAA 3 cut(s) 254, 521, 632
AhlI ACTAGT 1 cut(s) 412
Alw26I GTCTC 3 cut(s) 116, 416, 638
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 1 cut(s) 153
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 603
Asp718I GGTACC 1 cut(s) 358
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 153, 184
AsuHPI GGTGA 2 cut(s) 36, 121
AvaII GGWCC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 358
BbsI GAAGAC 2 cut(s) 32, 390
BccI CCATC 1 cut(s) 175
BcoDI GTCTC 3 cut(s) 116, 416, 638
BcuI ACTAGT 1 cut(s) 412
BfaI CTAG 3 cut(s) 188, 413, 770
BfrI CTTAAG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 153, 184
BmiI GGNNCC 2 cut(s) 154, 360
BmsI GCATC 1 cut(s) 50
BpiI GAAGAC 2 cut(s) 32, 390
Bsa29I ATCGAT 1 cut(s) 456
BsaBI GATNNNNATC 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 150
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 2 cut(s) 503, 563
Bse8I GATNNNNATC 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 456
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 149, 150
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 503, 563
BseRI GAGGAG 3 cut(s) 83, 323, 416
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 358
BshVI ATCGAT 1 cut(s) 456
BsiSI CCGG 1 cut(s) 593
BslI CCNNNNNNNGG 2 cut(s) 149, 150
BsmAI GTCTC 3 cut(s) 116, 416, 638
BsnI GGCC 1 cut(s) 155
Bsp143I GATC 5 cut(s) 94, 453, 693, 720, 759
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 289
BspDI ATCGAT 1 cut(s) 456
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 154, 360
BspQI GCTCTTC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 358
BspTI CTTAAG 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 2 cut(s) 503, 563
BssAI RCCGGY 1 cut(s) 592
BssMI GATC 5 cut(s) 94, 453, 693, 720, 759
Bst6I CTCTTC 6 cut(s) 273, 414, 474, 504, 627, 711
BstAFI CTTAAG 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 117, 297
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 5 cut(s) 97, 456, 696, 723, 762
BstMAI GTCTC 3 cut(s) 116, 416, 638
BstMBI GATC 5 cut(s) 94, 453, 693, 720, 759
BstMWI GCNNNNNNNGC 2 cut(s) 47, 341
BstUI CGCG 1 cut(s) 14
BstV2I GAAGAC 2 cut(s) 32, 390
Bsu15I ATCGAT 1 cut(s) 456
BsuRI GGCC 1 cut(s) 155
BsuTUI ATCGAT 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 703
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 2 cut(s) 153, 184
ClaI ATCGAT 1 cut(s) 456
Csp6I GTAC 1 cut(s) 359
CviAII CATG 1 cut(s) 338
CviJI RGCY 2 cut(s) 155, 283
CviKI_1 RGCY 2 cut(s) 155, 283
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 2 cut(s) 117, 297
DpnI GATC 5 cut(s) 96, 455, 695, 722, 761
DpnII GATC 5 cut(s) 94, 453, 693, 720, 759
Eam1104I CTCTTC 6 cut(s) 273, 414, 474, 504, 627, 711
EarI CTCTTC 6 cut(s) 273, 414, 474, 504, 627, 711
Eco32I GATATC 4 cut(s) 463, 493, 553, 583
Eco47I GGWCC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 153
EcoRV GATATC 4 cut(s) 463, 493, 553, 583
EcoT22I ATGCAT 1 cut(s) 43
FaeI CATG 1 cut(s) 341
FaiI YATR 6 cut(s) 39, 93, 339, 350, 612, 704
FatI CATG 1 cut(s) 337
FspBI CTAG 3 cut(s) 188, 413, 770
GlaI GCGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 593
HhaI GCGC 1 cut(s) 14
Hin1II CATG 1 cut(s) 341
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 2 cut(s) 250, 604
HpaI GTTAAC 1 cut(s) 75
HpaII CCGG 1 cut(s) 593
HphI GGTGA 2 cut(s) 36, 121
Hpy166II GTNNAC 3 cut(s) 20, 75, 112
Hpy188I TCNGA 1 cut(s) 793
Hpy188III TCNNGA 6 cut(s) 98, 466, 496, 556, 586, 619
Hpy8I GTNNAC 3 cut(s) 20, 75, 112
Hpy99I CGWCG 1 cut(s) 793
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 788
HpyCH4V TGCA 2 cut(s) 41, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 341
HpyF3I CTNAG 2 cut(s) 117, 297
HpySE526I ACGT 1 cut(s) 788
Hsp92II CATG 1 cut(s) 341
HspAI GCGC 1 cut(s) 12
KpnI GGTACC 1 cut(s) 362
KspAI GTTAAC 1 cut(s) 75
Kzo9I GATC 5 cut(s) 94, 453, 693, 720, 759
LguI GCTCTTC 1 cut(s) 273
LpnPI CCDG 7 cut(s) 60, 66, 99, 486, 516, 576, 606
LweI GCATC 1 cut(s) 50
MaeI CTAG 3 cut(s) 188, 413, 770
MaeII ACGT 1 cut(s) 788
MaeIII GTNAC 1 cut(s) 698
MalI GATC 5 cut(s) 96, 455, 695, 722, 761
MboI GATC 5 cut(s) 94, 453, 693, 720, 759
MfeI CAATTG 1 cut(s) 627
MluCI AATT 5 cut(s) 7, 372, 522, 627, 805
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 7 cut(s) 61, 154, 160, 208, 301, 394, 721
Mph1103I ATGCAT 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 603
MspCI CTTAAG 1 cut(s) 161
MspI CCGG 1 cut(s) 593
MunI CAATTG 1 cut(s) 627
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 47, 341
NdeII GATC 5 cut(s) 94, 453, 693, 720, 759
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 2 cut(s) 154, 360
NmuCI GTSAC 1 cut(s) 698
NsiI ATGCAT 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 2 cut(s) 250, 604
PshBI ATTAAT 1 cut(s) 486
PspN4I GGNNCC 2 cut(s) 154, 360
PspPI GGNCC 2 cut(s) 153, 184
PstNI CAGNNNCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
SapI GCTCTTC 1 cut(s) 273
Sau3AI GATC 5 cut(s) 94, 453, 693, 720, 759
Sau96I GGNCC 2 cut(s) 153, 184
SetI ASST 6 cut(s) 55, 88, 219, 246, 791, 802
SfaNI GCATC 1 cut(s) 50
SinI GGWCC 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 412
Sse9I AATT 5 cut(s) 7, 372, 522, 627, 805
SspMI CTAG 3 cut(s) 188, 413, 770
TaiI ACGT 1 cut(s) 791
TaqI TCGA 5 cut(s) 321, 456, 567, 585, 660
TasI AATT 5 cut(s) 7, 372, 522, 627, 805
TfiI GAWTC 2 cut(s) 250, 604
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 1 cut(s) 698
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 3 cut(s) 354, 596, 791
TspRI CASTG 1 cut(s) 703
Vha464I CTTAAG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 184
VspI ATTAAT 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 3 cut(s) 188, 413, 770
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.