Prupe.1G560900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015636
Physical Location & Seq
Reverse (-)
45793162 .. 45794378
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G560900.1

Sequence Viewer

Length: 612 bp
ATGGGTAATTGCGCTAGTGAACCCAAGACCAAGGGTGATGATGTTGCTGGAGTCCCAGCACCCGAGCCCAAGACAGAGGAGTTGGTCCAGGGCAACGAGGTGAACCGCGAGCTGCTGCAGGAGGAGAACAAGGCTGATGATGGAGATGCTCAGCAAAACAACGATGCTGGTCATAACAAGCAACCCTCTCTTGGGGCCTTGCTCAAGGAGGAAGAAGAAAAGACAGCTCATGTTGCTGCAAAGCTAGAAGAAGTCGAAGAAAAGGCAAAGACCACTGAAAAGAAAGAGGAAGTAGTGGTTGAGTTGGAGAAGGCATCTGAAGCAACACCAGTTGCAGTTACCCAAGAAGAGAAGAAATCTGATATTGAGGAGAAGAAACCAGAAGTGAAAGAGACCAAACCAGAAGTGGAGGAGACCAAACCAGAAGTGAAGGAGATTAAACCAGAAGAGAAAGTGACAAAACCAGAAGAAAAGGATACAAAACCAGGAGAGAAAGTGACAAAACCAGAAGAGAAAGTGATAAAACCAGAAGAGAAAGTGACAAAACCAGAAGAAAAGGAGACAAAACCAGAAGAGAAGGAGACAAAAGAAGAAAAGAAGGAGCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4694

Protein Analysis

204

Amino Acids

22.77

Weight (kDa)

4.76

Isoelectric Point (pI)

58.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30481
malus_domestica MD08G1223500.v1.1 MD15G1417000.v1.1
prunus_persica Prupe.1G560900_v2.0.a1
pyrus_communis pycom15g36980
rosa_chinensis RchiOBHm_Chr7g0225161
rosa_laevigata RLG00000001842
rosa_multiflora Rmu_sc0000322.1_g000003 Rmu_sc0003737.1_g000006
rosa_roxburghii Rroxscaffold_3G00234180
rosa_rugosa Rorug07G0227700
rosa_samantha Rh7AG376000 Rh7BG362600 Rh7CG394600 Rh7DG373400
rosa_wichuraiana Rw7G031500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AciI CCGC 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 339
AfiI CCNNNNNNNGG 2 cut(s) 191, 192
AjnI CCWGG 2 cut(s) 87, 484
AluBI AGCT 3 cut(s) 112, 227, 244
AluI AGCT 3 cut(s) 112, 227, 244
Alw26I GTCTC 4 cut(s) 386, 407, 554, 575
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 112, 115, 236
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 85, 195
AsuHPI GGTGA 2 cut(s) 47, 112
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 99, 102, 223
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 2 cut(s) 89, 486
BciVI GTATCC 1 cut(s) 469
BcoDI GTCTC 4 cut(s) 386, 407, 554, 575
BfaI CTAG 2 cut(s) 15, 245
BfmI CTRYAG 1 cut(s) 116
BfuI GTATCC 1 cut(s) 469
BisI GCNGC 3 cut(s) 113, 116, 237
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 3 cut(s) 114, 117, 238
Bme1390I CCNGG 2 cut(s) 89, 486
Bme18I GGWCC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 85, 195
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 89, 486
BmsI GCATC 3 cut(s) 136, 154, 323
BpmI CTGGAG 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 188
BsaI GGTCTC 2 cut(s) 386, 407
BsaJI CCNNGG 2 cut(s) 30, 88
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 192
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 2 cut(s) 89, 486
BseDI CCNNGG 2 cut(s) 30, 88
BseLI CCNNNNNNNGG 2 cut(s) 191, 192
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 4 cut(s) 92, 137, 383, 425
BseXI GCAGC 3 cut(s) 99, 102, 223
BseYI CCCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 191, 192
BsmAI GTCTC 4 cut(s) 386, 407, 554, 575
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 197
Bso31I GGTCTC 2 cut(s) 386, 407
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 120
BspTNI GGTCTC 2 cut(s) 386, 407
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 30, 88
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 89, 486
Bst6I CTCTTC 5 cut(s) 342, 441, 504, 525, 567
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 14
BstMAI GTCTC 4 cut(s) 386, 407, 554, 575
BstMWI GCNNNNNNNGC 2 cut(s) 233, 320
BstNI CCWGG 2 cut(s) 89, 486
BstSCI CCNGG 2 cut(s) 87, 484
BstSFI CTRYAG 1 cut(s) 116
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 3 cut(s) 99, 102, 223
BsuI GTATCC 1 cut(s) 469
BsuRI GGCC 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 110
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 85, 195
CviAII CATG 1 cut(s) 230
CviJI RGCY 6 cut(s) 67, 112, 134, 197, 227, 244
CviKI_1 RGCY 6 cut(s) 67, 112, 134, 197, 227, 244
DdeI CTNAG 1 cut(s) 150
Eam1104I CTCTTC 5 cut(s) 342, 441, 504, 525, 567
EarI CTCTTC 5 cut(s) 342, 441, 504, 525, 567
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 2 cut(s) 386, 407
Eco47I GGWCC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 195
EcoRII CCWGG 2 cut(s) 87, 484
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 233
FaiI YATR 3 cut(s) 174, 231, 610
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 229
Fnu4HI GCNGC 3 cut(s) 113, 116, 237
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 113, 116, 237
FspBI CTAG 2 cut(s) 15, 245
GlaI GCGC 1 cut(s) 13
GluI GCNGC 3 cut(s) 113, 116, 237
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 197
HhaI GCGC 1 cut(s) 14
Hin1II CATG 1 cut(s) 233
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 1 cut(s) 51
HphI GGTGA 2 cut(s) 47, 112
Hpy166II GTNNAC 2 cut(s) 20, 103
Hpy188I TCNGA 2 cut(s) 319, 361
Hpy8I GTNNAC 2 cut(s) 20, 103
HpyAV CCTTC 4 cut(s) 304, 424, 571, 592
HpyCH4V TGCA 3 cut(s) 118, 239, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 320
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 1 cut(s) 233
HspAI GCGC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 601
Lsp1109I GCAGC 3 cut(s) 99, 102, 223
LweI GCATC 3 cut(s) 136, 154, 323
MaeI CTAG 2 cut(s) 15, 245
MaeIII GTNAC 4 cut(s) 337, 454, 496, 538
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 1 cut(s) 7
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 8 cut(s) 70, 91, 115, 196, 202, 280, 361, 403
MseI TTAA 1 cut(s) 438
MspR9I CCNGG 2 cut(s) 89, 486
MvaI CCWGG 2 cut(s) 89, 486
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 233, 320
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 3 cut(s) 454, 496, 538
PkrI GCNGC 3 cut(s) 114, 117, 238
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 87, 484
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 87, 484
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 2 cut(s) 85, 195
PstI CTGCAG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 3 cut(s) 113, 116, 237
Sau96I GGNCC 2 cut(s) 85, 195
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 2 cut(s) 89, 486
SduI GDGCHC 1 cut(s) 69
SetI ASST 4 cut(s) 102, 114, 229, 246
SfaNI GCATC 3 cut(s) 136, 154, 323
SfcI CTRYAG 1 cut(s) 116
SinI GGWCC 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 7
SsiI CCGC 1 cut(s) 106
SspMI CTAG 2 cut(s) 15, 245
StyD4I CCNGG 2 cut(s) 87, 484
StyI CCWWGG 1 cut(s) 30
TaqI TCGA 1 cut(s) 255
TasI AATT 1 cut(s) 7
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 3 cut(s) 454, 496, 538
TseI GCWGC 3 cut(s) 112, 115, 236
Tsp45I GTSAC 3 cut(s) 454, 496, 538
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XspI CTAG 2 cut(s) 15, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.