Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015636

Physical Location & Seq

Genomic Coordinates Reverse (-)

21698928 .. 21700074

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGTAATTGCGCGAGTGAACCAAAGACCGATGATTTTGCATCACCAGCACCCGTGCTCAAGAAGGAGGAAGAACGTGATGAATTAGTGTACACTGGGTTGGGTAATGAAGATAAGCAACCTTCTCTTGGGGCCTTGCTTATGGAGGAAGAAGAAAAGGCAGCCCCAGTTCTTTCAAAGCCAAAAGAAACAGAGGTGGTAGTTGAGCCAAAAGAGACGAAGGTAGTGGCTGAGCAGAAAGAAGAAAAAGAAGAAGGAAAGCCTAAAACTACGATCGAGAAGAAAGAGGAAATAGATGCCGAGCAAGTGAAAGCACCTGAAGCAGAAATAGTATCGGTACTAGCAGATACAGTTACCCAAGAAGATAAGAAATTTGATGAGGAGAAGAAACTAGTAGAAGATATCAACGAGATCAAGAAACCAGCAAAAGAAAGCGTTGATATCAAGAAACCGGCAGAAGTGATCGACGATATCAAGAAACCAGCAGAAGAGATCGACGATATTAAGAAACCAGCAGAAAAGATTCACGATATCAAGAAAGCAGCAGAAGAGATAAATAAGATTAAGAAACTCGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4694

Protein Analysis

194

Amino Acids

21.64

Weight (kDa)

4.72

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30481
malus_domestica	MD08G1223500.v1.1 MD15G1417000.v1.1
prunus_persica	Prupe.1G560900_v2.0.a1
pyrus_communis	pycom15g36980
rosa_chinensis	RchiOBHm_Chr7g0225161
rosa_laevigata	RLG00000001842
rosa_multiflora	Rmu_sc0000322.1_g000003 Rmu_sc0003737.1_g000006
rosa_roxburghii	Rroxscaffold_3G00234180
rosa_rugosa	Rorug07G0227700
rosa_samantha	Rh7AG376000 Rh7BG362600 Rh7CG394600 Rh7DG373400
rosa_wichuraiana	Rw7G031500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	92, 339
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	177
AhlI	ACTAGT	1 cut(s)	391
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	161, 542
ApoI	RAATTY	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	173, 554
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BcoDI	GTCTC	1 cut(s)	209
BcuI	ACTAGT	1 cut(s)	391
BfaI	CTAG	2 cut(s)	341, 392
BisI	GCNGC	2 cut(s)	162, 543
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	2 cut(s)	163, 544
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	133
BmrI	ACTGGG	2 cut(s)	105, 161
BmsI	GCATC	2 cut(s)	50, 286
BmuI	ACTGGG	2 cut(s)	105, 161
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	100, 167
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	100, 167
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	173, 554
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	134
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	273, 411, 462, 492
Bsp1720I	GCTNAGC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	451
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	100, 167
BssAI	RCCGGY	1 cut(s)	451
BssMI	GATC	4 cut(s)	273, 411, 462, 492
Bst4CI	ACNGT	2 cut(s)	352, 579
Bst6I	CTCTTC	2 cut(s)	483, 543
BstAUI	TGTACA	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	4 cut(s)	276, 414, 465, 495
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	4 cut(s)	273, 411, 462, 492
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 320
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	173, 554
BsuRI	GGCC	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	93
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	91, 338
CviJI	RGCY	6 cut(s)	134, 164, 181, 208, 230, 262
CviKI_1	RGCY	6 cut(s)	134, 164, 181, 208, 230, 262
CviQI	GTAC	2 cut(s)	91, 338
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	4 cut(s)	275, 413, 464, 494
DpnII	GATC	4 cut(s)	273, 411, 462, 492
Eam1104I	CTCTTC	2 cut(s)	483, 543
EarI	CTCTTC	2 cut(s)	483, 543
Eco32I	GATATC	4 cut(s)	403, 442, 472, 532
Eco57I	CTGAAG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRV	GATATC	4 cut(s)	403, 442, 472, 532
Esp3I	CGTCTC	1 cut(s)	209
FaiI	YATR	1 cut(s)	143
Fnu4HI	GCNGC	2 cut(s)	162, 543
Fsp4HI	GCNGC	2 cut(s)	162, 543
FspBI	CTAG	2 cut(s)	341, 392
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	162, 543
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	452
HhaI	GCGC	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	3 cut(s)	20, 91, 93
Hpy188III	TCNNGA	7 cut(s)	61, 277, 415, 445, 475, 527, 535
Hpy8I	GTNNAC	3 cut(s)	20, 91, 93
Hpy99I	CGWCG	2 cut(s)	470, 500
HpyAV	CCTTC	4 cut(s)	58, 132, 214, 248
HpyCH4III	ACNGT	2 cut(s)	352, 579
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 320
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	76
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	273, 411, 462, 492
LpnPI	CCDG	8 cut(s)	60, 81, 180, 330, 435, 465, 495, 525
Lsp1109I	GCAGC	2 cut(s)	173, 554
LweI	GCATC	2 cut(s)	50, 286
MaeI	CTAG	2 cut(s)	341, 392
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	4 cut(s)	275, 413, 464, 494
MboI	GATC	4 cut(s)	273, 411, 462, 492
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	3 cut(s)	7, 83, 371
MnlI	CCTC	5 cut(s)	61, 139, 187, 280, 373
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	2 cut(s)	504, 564
MspI	CCGG	1 cut(s)	452
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	47, 320
NdeII	GATC	4 cut(s)	273, 411, 462, 492
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	523
PkrI	GCNGC	2 cut(s)	163, 544
Ple19I	CGATCG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	132
PvuI	CGATCG	1 cut(s)	276
RsaI	GTAC	2 cut(s)	92, 339
RsaNI	GTAC	2 cut(s)	91, 338
SaqAI	TTAA	2 cut(s)	504, 564
SatI	GCNGC	2 cut(s)	162, 543
Sau3AI	GATC	4 cut(s)	273, 411, 462, 492
Sau96I	GGNCC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	5 cut(s)	79, 124, 198, 225, 319
SfaNI	GCATC	2 cut(s)	50, 286
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SpeI	ACTAGT	1 cut(s)	391
Sse9I	AATT	3 cut(s)	7, 83, 371
SspMI	CTAG	2 cut(s)	341, 392
TaaI	ACNGT	2 cut(s)	352, 579
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	4 cut(s)	276, 465, 495, 573
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	3 cut(s)	7, 83, 371
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	2 cut(s)	504, 564
Tru9I	TTAA	2 cut(s)	504, 564
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	2 cut(s)	161, 542
TspDTI	ATGAA	2 cut(s)	96, 123
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	2 cut(s)	341, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.