Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015636

Physical Location & Seq

Genomic Coordinates Reverse (-)

36959059 .. 36960484

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGTAATTGTGCTAGTGAACCAAAGACCAAGGGTGATGATGCTGCTGCAGTCCCAGCACCGGAGCCCAGGAAGGAGTCGGTTCAGGCCGAGGAGGTGAACGCTGAGCAGCTGCAGGAAGAAAACAAGGCCGAACAAAATACCGATGGTGGTCATAACAAACAACCCTCTCTCGGGGCCTTGCTCAAGGAGGAAGAAGAGAAGAGAGCCGAAGTGGCGGCAAAGGTAGAAGAAGAGAAGATAGCTGAAGTTGCGGAAAAGCTAGAAGAAGAGAAGATAGCTGAAGTTGCGGCAAAGCTAGAAGAAGCAGAAGAAAAGCCAAAGACCACTGAGAAGAATGAGGAGATAGCGGTTGAGCTCGAGAAATCACCTCAAGCAGCAGCACCAGCTGCAGTTACCCAAGAAGACAAGAAATTTGATATTGAGGAGAAGAGAGAGGAGATAGCGGTTGAGCTCGAGAAATCACCTGAAGTAGCAGCACCAGCTGCAGTTACCCAAGAAGACAAGAAATCTGATATTGAGGAGAAGAAACCCGAAGAGGTAAAGGAGACAAAACCAGAAGAGAAGCTGGTAAAACCAAAAGAGATCAAGGAGACAAAAGCAGAAGAGACCACGATGACAAAAACAGAAGAGACCAAGGAGACAAAACCTGAAGTGAAAGACCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4694

Protein Analysis

224

Amino Acids

24.74

Weight (kDa)

4.6

Isoelectric Point (pI)

72.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015636)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30481
malus_domestica	MD08G1223500.v1.1 MD15G1417000.v1.1
prunus_persica	Prupe.1G560900_v2.0.a1
pyrus_communis	pycom15g36980
rosa_chinensis	RchiOBHm_Chr7g0225161
rosa_laevigata	RLG00000001842
rosa_multiflora	Rmu_sc0000322.1_g000003 Rmu_sc0003737.1_g000006
rosa_roxburghii	Rroxscaffold_3G00234180
rosa_rugosa	Rorug07G0227700
rosa_samantha	Rh7AG376000 Rh7BG362600 Rh7CG394600 Rh7DG373400
rosa_wichuraiana	Rw7G031500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	218, 254, 290, 350, 446
AcsI	RAATTY	1 cut(s)	413
AcuI	CTGAAG	4 cut(s)	267, 303, 489, 672
AfiI	CCNNNNNNNGG	3 cut(s)	61, 173, 174
AjnI	CCWGG	1 cut(s)	68
Alw21I	GWGCWC	2 cut(s)	360, 456
Alw26I	GTCTC	5 cut(s)	542, 587, 602, 626, 635
Ama87I	CYCGRG	3 cut(s)	173, 359, 455
AoxI	GGCC	3 cut(s)	87, 129, 177
ApeKI	GCWGC	9 cut(s)	44, 47, 109, 112, 377, 380, 389, 476, 485
ApoI	RAATTY	1 cut(s)	413
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	4 cut(s)	47, 109, 360, 456
AvaI	CYCGRG	3 cut(s)	173, 359, 455
BanII	GRGCYC	3 cut(s)	69, 360, 456
BbsI	GAAGAC	2 cut(s)	411, 507
Bbv12I	GWGCWC	2 cut(s)	360, 456
BbvI	GCAGC	9 cut(s)	31, 34, 99, 121, 376, 389, 392, 472, 488
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	5 cut(s)	542, 587, 602, 626, 635
BfaI	CTAG	3 cut(s)	15, 263, 299
BfmI	CTRYAG	4 cut(s)	48, 113, 390, 486
BglI	GCCNNNNNGGC	1 cut(s)	215
BlpI	GCTNAGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	70
BmeT110I	CYCGRG	3 cut(s)	173, 359, 455
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	66, 178
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	2 cut(s)	411, 507
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	2 cut(s)	170, 357
BsaI	GGTCTC	2 cut(s)	602, 626
BsaJI	CCNNGG	4 cut(s)	30, 68, 90, 636
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 173, 174
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	4 cut(s)	30, 68, 90, 636
BseLI	CCNNNNNNNGG	3 cut(s)	61, 173, 174
BseMII	CTCAG	2 cut(s)	96, 321
BseRI	GAGGAG	5 cut(s)	107, 356, 440, 452, 536
BseXI	GCAGC	9 cut(s)	31, 34, 99, 121, 376, 389, 392, 472, 488
BseYI	CCCAGC	1 cut(s)	55
BshFI	GGCC	3 cut(s)	89, 131, 179
BsiHKAI	GWGCWC	2 cut(s)	360, 456
BsiHKCI	CYCGRG	3 cut(s)	173, 359, 455
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	61, 173, 174
BsmAI	GTCTC	5 cut(s)	542, 587, 602, 626, 635
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	3 cut(s)	89, 131, 179
Bso31I	GGTCTC	2 cut(s)	602, 626
BsoBI	CYCGRG	3 cut(s)	173, 359, 455
Bsp1286I	GDGCHC	3 cut(s)	69, 360, 456
Bsp143I	GATC	1 cut(s)	585
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	5 cut(s)	218, 254, 290, 350, 446
BspANI	GGCC	3 cut(s)	89, 131, 179
BspCNI	CTCAG	2 cut(s)	97, 322
BspLI	GGNNCC	2 cut(s)	66, 178
BspMAI	CTGCAG	4 cut(s)	52, 117, 394, 490
BspTNI	GGTCTC	2 cut(s)	602, 626
BssECI	CCNNGG	4 cut(s)	30, 68, 90, 636
BssMI	GATC	1 cut(s)	585
BssT1I	CCWWGG	2 cut(s)	30, 636
Bst2UI	CCWGG	1 cut(s)	70
Bst6I	CTCTTC	9 cut(s)	192, 197, 228, 264, 425, 531, 555, 600, 624
BstAPI	GCANNNNNTGC	2 cut(s)	389, 485
BstDEI	CTNAG	2 cut(s)	105, 330
BstKTI	GATC	1 cut(s)	588
BstMAI	GTCTC	5 cut(s)	542, 587, 602, 626, 635
BstMBI	GATC	1 cut(s)	585
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 215, 251, 287, 386, 389, 482, 485
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	4 cut(s)	48, 113, 390, 486
BstV1I	GCAGC	9 cut(s)	31, 34, 99, 121, 376, 389, 392, 472, 488
BstV2I	GAAGAC	2 cut(s)	411, 507
BsuRI	GGCC	3 cut(s)	89, 131, 179
BtsIMutI	CAGTG	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	177
DdeI	CTNAG	2 cut(s)	105, 330
DpnI	GATC	1 cut(s)	587
DpnII	GATC	1 cut(s)	585
Eam1104I	CTCTTC	9 cut(s)	192, 197, 228, 264, 425, 531, 555, 600, 624
EarI	CTCTTC	9 cut(s)	192, 197, 228, 264, 425, 531, 555, 600, 624
Ecl136II	GAGCTC	2 cut(s)	358, 454
Eco130I	CCWWGG	2 cut(s)	30, 636
Eco24I	GRGCYC	3 cut(s)	69, 360, 456
Eco31I	GGTCTC	2 cut(s)	602, 626
Eco53kI	GAGCTC	2 cut(s)	358, 454
Eco57I	CTGAAG	4 cut(s)	267, 303, 489, 672
Eco88I	CYCGRG	3 cut(s)	173, 359, 455
EcoICRI	GAGCTC	2 cut(s)	358, 454
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	2 cut(s)	30, 636
EcoT38I	GRGCYC	3 cut(s)	69, 360, 456
ErhI	CCWWGG	2 cut(s)	30, 636
FaiI	YATR	2 cut(s)	156, 670
FaqI	GGGAC	1 cut(s)	38
FriOI	GRGCYC	3 cut(s)	69, 360, 456
FspBI	CTAG	3 cut(s)	15, 263, 299
GsaI	CCCAGC	1 cut(s)	59
HaeIII	GGCC	3 cut(s)	89, 131, 179
HapII	CCGG	1 cut(s)	62
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	4 cut(s)	47, 109, 360, 456
Hpy166II	GTNNAC	2 cut(s)	20, 100
Hpy188I	TCNGA	1 cut(s)	514
Hpy188III	TCNNGA	2 cut(s)	361, 457
Hpy8I	GTNNAC	2 cut(s)	20, 100
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	50, 115, 392, 488
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 215, 251, 287, 386, 389, 482, 485
HpyF3I	CTNAG	2 cut(s)	105, 330
Kzo9I	GATC	1 cut(s)	585
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	9 cut(s)	31, 34, 99, 121, 376, 389, 392, 472, 488
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	3 cut(s)	15, 263, 299
MaeIII	GTNAC	2 cut(s)	394, 490
MalI	GATC	1 cut(s)	587
MboI	GATC	1 cut(s)	585
MhlI	GDGCHC	3 cut(s)	69, 360, 456
MluCI	AATT	2 cut(s)	7, 413
MlyI	GAGTC	1 cut(s)	86
MspA1I	CMGCKG	3 cut(s)	112, 389, 485
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	8 cut(s)	56, 215, 251, 287, 386, 389, 482, 485
NdeII	GATC	1 cut(s)	585
NlaIV	GGNNCC	2 cut(s)	66, 178
NmeAIII	GCCGAG	1 cut(s)	115
PaeR7I	CTCGAG	2 cut(s)	359, 455
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp124BI	GAGCTC	2 cut(s)	360, 456
Psp6I	CCWGG	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	66, 178
PspPI	GGNCC	1 cut(s)	177
PstI	CTGCAG	4 cut(s)	52, 117, 394, 490
PvuII	CAGCTG	3 cut(s)	112, 389, 485
SacI	GAGCTC	2 cut(s)	360, 456
Sau3AI	GATC	1 cut(s)	585
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	3 cut(s)	69, 360, 456
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	4 cut(s)	48, 113, 390, 486
Sfr274I	CTCGAG	2 cut(s)	359, 455
SlaI	CTCGAG	2 cut(s)	359, 455
SmlI	CTYRAG	4 cut(s)	185, 359, 372, 455
SmoI	CTYRAG	4 cut(s)	185, 359, 372, 455
Sse9I	AATT	2 cut(s)	7, 413
SsiI	CCGC	5 cut(s)	218, 254, 290, 350, 446
SspMI	CTAG	3 cut(s)	15, 263, 299
SstI	GAGCTC	2 cut(s)	360, 456
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	2 cut(s)	30, 636
TaqI	TCGA	2 cut(s)	360, 456
TasI	AATT	2 cut(s)	7, 413
TauI	GCSGC	2 cut(s)	221, 293
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	9 cut(s)	44, 47, 109, 112, 377, 380, 389, 476, 485
TspRI	CASTG	1 cut(s)	334
XapI	RAATTY	1 cut(s)	413
XhoI	CTCGAG	2 cut(s)	359, 455
XspI	CTAG	3 cut(s)	15, 263, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.