FvH4_5g30720

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017200
Physical Location & Seq
Reverse (-)
21637449 .. 21638426
978 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30720.t1

Sequence Viewer

Length: 654 bp
ATGGCTGCAAGAGCATATTCAAGCGCCTTTGGAGCTGGTTTCGACAAGACCATGACATCTGTCATTGTCAAATATCGTGGTTCAGATGAACAAGACACCCACCCTCGAAGACTTCCTATTTTCCCACATCTTCCACCCTATAATAGAACACAAGCAGCAACAGACTTTACCAAGCAATTTAGGAGCCTTGCAACAAAAAACCACCCTACCAAAGTCTCAATACAATCAATCGACATCCTTCGAGCTTACTATTACAAAATTCCGAAGGTATTCGAGAAGAATTTTCCAGTTAAACCACCTAAGGAATTCAATTACATTGGTGATGATCTTCCAAATGAATTTTTGACATCCTCCTATGGAACTAAGGTGATGGTTTTGAAGTACAATGCAAGTGTTGAGTTGGTTTTGCAAGGGACTAATGTGTTAGCAAGTGATAACCATCCTGTGCATTTACATGGATATAGTTTTTATGTTGTTGGCTCCGGTTTTGGAAATTTCAACCCTAAAGAAGATCCACTGAGATACAATCTTGTTGATCCTCCTAAGGAGAGCACTGTTGGTGTTCCGAAGAATGGCTGGGTCGCAATCCGATTTAGAGCAAATAATCCAGGCATATGGTTAATGCATTGTCACATAGAGCGTCATCAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

218

Amino Acids

24.66

Weight (kDa)

9.48

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 95 - 216 1.9e-38 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09360
fragaria_vesca FvH4_5g30720
malus_domestica MD15G1412600.v1.1
prunus_persica Prupe.1G559300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0225621
rosa_laevigata RLG00000001800
rosa_multiflora Rmu_co8516127.1_g000001
rosa_roxburghii Rroxscaffold_3G00233630
rosa_rugosa Rorug07G0231900
rosa_samantha Rh7AG371900 Rh7BG365800 Rh7DG376600
rosa_wichuraiana Rw7G031780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 506, 530
AcsI RAATTY 5 cut(s) 258, 280, 305, 338, 493
AfaI GTAC 1 cut(s) 383
AfiI CCNNNNNNNGG 1 cut(s) 572
AgsI TTSAA 4 cut(s) 21, 310, 379, 499
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 2 cut(s) 35, 245
AluI AGCT 2 cut(s) 35, 245
Alw21I GWGCWC 1 cut(s) 554
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 2 cut(s) 506, 530
ApeKI GCWGC 2 cut(s) 5, 155
ApoI RAATTY 5 cut(s) 258, 280, 305, 338, 493
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 332, 379
AxyI CCTNAGG 2 cut(s) 300, 543
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 554
BbvI GCAGC 1 cut(s) 167
BccI CCATC 2 cut(s) 364, 447
BciT130I CCWGG 1 cut(s) 609
BcoDI GTCTC 1 cut(s) 220
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 2 cut(s) 6, 156
BlsI GCNGC 2 cut(s) 7, 157
Bme1390I CCNGG 1 cut(s) 609
BmiI GGNNCC 2 cut(s) 185, 481
BmrFI CCNGG 1 cut(s) 609
BoxI GACNNNNGTC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 482
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse1I ACTGG 1 cut(s) 287
Bse21I CCTNAGG 2 cut(s) 300, 543
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 1 cut(s) 609
BseGI GGATG 3 cut(s) 234, 347, 439
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 167
BseYI CCCAGC 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 554
BsiSI CCGG 1 cut(s) 483
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 554
Bsp143I GATC 3 cut(s) 325, 511, 535
BspCNI CTCAG 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 185, 481
BspPI GGATC 2 cut(s) 506, 530
BsrI ACTGG 1 cut(s) 287
BssMI GATC 3 cut(s) 325, 511, 535
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 1 cut(s) 556
BstDEI CTNAG 4 cut(s) 300, 363, 518, 543
BstF5I GGATG 3 cut(s) 234, 347, 439
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 3 cut(s) 328, 514, 538
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 3 cut(s) 325, 511, 535
BstMWI GCNNNNNNNGC 2 cut(s) 11, 32
BstNI CCWGG 1 cut(s) 609
BstPAI GACNNNNGTC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 607
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 511
BstXI CCANNNNNNTGG 1 cut(s) 615
BstYI RGATCY 1 cut(s) 511
Bsu36I CCTNAGG 2 cut(s) 300, 543
BtsCI GGATG 3 cut(s) 234, 347, 439
BtsIMutI CAGTG 2 cut(s) 515, 552
CfoI GCGC 1 cut(s) 26
CseI GACGC 1 cut(s) 629
Csp6I GTAC 1 cut(s) 382
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 2 cut(s) 52, 455
CviJI RGCY 6 cut(s) 5, 35, 186, 245, 480, 576
CviKI_1 RGCY 6 cut(s) 5, 35, 186, 245, 480, 576
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 4 cut(s) 300, 363, 518, 543
DpnI GATC 3 cut(s) 327, 513, 537
DpnII GATC 3 cut(s) 325, 511, 535
Eco81I CCTNAGG 2 cut(s) 300, 543
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 607
EcoT22I ATGCAT 1 cut(s) 627
FaeI CATG 2 cut(s) 55, 458
FaqI GGGAC 1 cut(s) 427
FatI CATG 2 cut(s) 51, 454
FauNDI CATATG 1 cut(s) 614
Fnu4HI GCNGC 2 cut(s) 6, 156
FokI GGATG 3 cut(s) 221, 334, 426
Fsp4HI GCNGC 2 cut(s) 6, 156
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 6, 156
GsaI CCCAGC 1 cut(s) 580
HaeII RGCGCY 1 cut(s) 27
HapII CCGG 1 cut(s) 483
HgaI GACGC 1 cut(s) 629
HhaI GCGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 55, 458
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HpaII CCGG 1 cut(s) 483
HphI GGTGA 2 cut(s) 332, 379
Hpy188I TCNGA 4 cut(s) 85, 264, 567, 590
Hpy188III TCNNGA 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 248, 259
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4V TGCA 6 cut(s) 8, 191, 389, 409, 448, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 32
HpyF3I CTNAG 4 cut(s) 300, 363, 518, 543
Hsp92II CATG 2 cut(s) 55, 458
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 3 cut(s) 325, 511, 535
LmnI GCTCC 3 cut(s) 32, 183, 485
LpnPI CCDG 7 cut(s) 21, 300, 456, 496, 562, 594, 621
Lsp1109I GCAGC 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 629
MalI GATC 3 cut(s) 327, 513, 537
MboI GATC 3 cut(s) 325, 511, 535
MboII GAAGA 6 cut(s) 120, 122, 289, 320, 521, 580
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 554
MluCI AATT 7 cut(s) 176, 258, 280, 305, 310, 338, 493
MnlI CCTC 3 cut(s) 114, 361, 549
Mph1103I ATGCAT 1 cut(s) 627
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 2 cut(s) 291, 620
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 1 cut(s) 609
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 2 cut(s) 11, 32
NdeI CATATG 1 cut(s) 614
NdeII GATC 3 cut(s) 325, 511, 535
NlaIII CATG 2 cut(s) 55, 458
NlaIV GGNNCC 2 cut(s) 185, 481
NmuCI GTSAC 1 cut(s) 629
NsiI ATGCAT 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 269
PkrI GCNGC 2 cut(s) 7, 157
PshAI GACNNNNGTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 607
PspFI CCCAGC 1 cut(s) 576
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 2 cut(s) 185, 481
PsuI RGATCY 1 cut(s) 511
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 2 cut(s) 291, 620
SatI GCNGC 2 cut(s) 6, 156
Sau3AI GATC 3 cut(s) 325, 511, 535
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 1 cut(s) 554
SetI ASST 5 cut(s) 37, 247, 270, 301, 369
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 7 cut(s) 176, 258, 280, 305, 310, 338, 493
StyD4I CCNGG 1 cut(s) 607
TaaI ACNGT 1 cut(s) 556
TaqI TCGA 5 cut(s) 42, 106, 231, 241, 273
TasI AATT 7 cut(s) 176, 258, 280, 305, 310, 338, 493
TatI WGTACW 1 cut(s) 381
Tru1I TTAA 2 cut(s) 291, 620
Tru9I TTAA 2 cut(s) 291, 620
TscAI CASTG 2 cut(s) 522, 559
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 2 cut(s) 5, 155
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 2 cut(s) 102, 351
TspRI CASTG 2 cut(s) 522, 559
XapI RAATTY 5 cut(s) 258, 280, 305, 338, 493
XmnI GAANNNNTTC 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.