Rorug07G0231900

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0017200
Physical Location & Seq
Reverse (-)
21240654 .. 21241229
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0231900.1

Sequence Viewer

Length: 576 bp
ATGGCAGTAGGCGCAAGTGCAAACCGAGACAGCGGCAAGGACAGGGCGATATACGTAAGGGTATTTGGCAGGGGAAGGATTTACTGGTACGTGATAGAGGAGAAATCGCCGGTCGACGACATTGACGACGACGACAGAATGATTGGATGTGAATCTGACAATGACAGAATCAGACGACTCTCGCTTCTATGTTCAGATTTCCGCATACATGAGGTACACTCCGCCTATTCGAGCAGCCTTGCCGCCATAAACTCCACCGTATACCTGATTGGTGGTGACGTTGCACAGAAAAAGAAAGACGCCGGTGAATATATTGCTTATCGACACTTGGATTTGGATTTGGGAGTAGGGGAATGGCAGCCGGACGGTGGGAATTTGGTGAATTATCAATATGGGGGAGCGGCAGTTGGCCCGGACGGTTTTATTTATACGGTGGGAGACAATATATACCGATTCTCTCCTGGTGGCCGGTTCCATGAGGAGTTGAGCTCCCCGCCAAGCATTTTCAGGCCACGTCTTCTTGGTCTTACTAGGAAAAAAATTTTCATCTATAGCATAGGAGGGGGCGTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

191

Amino Acids

21.15

Weight (kDa)

5.8

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09360
fragaria_vesca FvH4_5g30720
malus_domestica MD15G1412600.v1.1
prunus_persica Prupe.1G559300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0225621
rosa_laevigata RLG00000001800
rosa_multiflora Rmu_co8516127.1_g000001
rosa_roxburghii Rroxscaffold_3G00233630
rosa_rugosa Rorug07G0231900
rosa_samantha Rh7AG371900 Rh7BG365800 Rh7DG376600
rosa_wichuraiana Rw7G031780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 401
AccI GTMKAC 2 cut(s) 114, 261
AciI CCGC 6 cut(s) 33, 202, 222, 243, 401, 494
AcoI YGGCCR 1 cut(s) 466
AcsI RAATTY 2 cut(s) 373, 540
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 2 cut(s) 89, 216
AfiI CCNNNNNNNGG 1 cut(s) 368
AjiI CACGTC 1 cut(s) 515
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 1 cut(s) 489
AluI AGCT 1 cut(s) 489
Alw21I GWGCWC 1 cut(s) 491
Alw26I GTCTC 2 cut(s) 21, 432
AoxI GGCC 3 cut(s) 409, 466, 509
ApeKI GCWGC 2 cut(s) 234, 358
ApoI RAATTY 2 cut(s) 373, 540
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 3 cut(s) 287, 317, 391
BanII GRGCYC 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 491
BbvI GCAGC 2 cut(s) 246, 370
BciT130I CCWGG 1 cut(s) 462
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 21, 432
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 550
BisI GCNGC 5 cut(s) 34, 235, 243, 359, 402
BlsI GCNGC 5 cut(s) 35, 236, 244, 360, 403
Bme1390I CCNGG 2 cut(s) 413, 462
BmgBI CACGTC 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 473
BmrFI CCNGG 2 cut(s) 413, 462
BpiI GAAGAC 1 cut(s) 509
BplI GAGNNNNNCTC 4 cut(s) 203, 235, 473, 505
BpuMI CCSGG 1 cut(s) 413
BsaAI YACGTR 2 cut(s) 55, 91
BsaBI GATNNNNATC 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 300
BsaXI ACNNNNNCTCC 3 cut(s) 390, 420, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse118I RCCGGY 3 cut(s) 109, 302, 468
Bse1I ACTGG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 151
BseBI CCWGG 1 cut(s) 462
BseGI GGATG 1 cut(s) 152
BseJI GATNNNNATC 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 2 cut(s) 113, 494
BseXI GCAGC 2 cut(s) 246, 370
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 411, 468, 511
BsiEI CGRYCG 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 491
BsiSI CCGG 5 cut(s) 110, 303, 362, 413, 469
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 2 cut(s) 21, 432
BsnI GGCC 3 cut(s) 411, 468, 511
Bsp1286I GDGCHC 1 cut(s) 491
BspACI CCGC 6 cut(s) 33, 202, 222, 243, 401, 494
BspANI GGCC 3 cut(s) 411, 468, 511
BspLI GGNNCC 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 401
BsrFI RCCGGY 3 cut(s) 109, 302, 468
BsrI ACTGG 1 cut(s) 89
BssAI RCCGGY 3 cut(s) 109, 302, 468
BssNAI GTATAC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 300
Bst1107I GTATAC 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 4 cut(s) 259, 368, 419, 433
BstACI GRCGYC 1 cut(s) 300
BstBAI YACGTR 2 cut(s) 55, 91
BstF5I GGATG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 14
BstMAI GTCTC 2 cut(s) 21, 432
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 411, 460
BstSFI CTRYAG 1 cut(s) 550
BstSNI TACGTA 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 246, 370
BstV2I GAAGAC 1 cut(s) 509
BstZ17I GTATAC 1 cut(s) 262
BsuRI GGCC 3 cut(s) 411, 468, 511
BtrI CACGTC 1 cut(s) 515
BtsCI GGATG 1 cut(s) 152
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 3 cut(s) 109, 302, 468
Cfr13I GGNCC 1 cut(s) 410
CseI GACGC 1 cut(s) 308
Csp6I GTAC 2 cut(s) 88, 215
CviAII CATG 2 cut(s) 209, 476
CviJI RGCY 6 cut(s) 237, 361, 411, 468, 489, 511
CviKI_1 RGCY 6 cut(s) 237, 361, 411, 468, 489, 511
CviQI GTAC 2 cut(s) 88, 215
EaeI YGGCCR 1 cut(s) 466
EciI GGCGGA 1 cut(s) 211
Ecl136II GAGCTC 1 cut(s) 489
Eco105I TACGTA 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 491
Eco53kI GAGCTC 1 cut(s) 489
EcoICRI GAGCTC 1 cut(s) 489
EcoRII CCWGG 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 491
FaeI CATG 2 cut(s) 212, 479
FatI CATG 2 cut(s) 208, 475
FauI CCCGC 1 cut(s) 501
FblI GTMKAC 2 cut(s) 114, 261
Fnu4HI GCNGC 5 cut(s) 34, 235, 243, 359, 402
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 5 cut(s) 34, 235, 243, 359, 402
FspBI CTAG 1 cut(s) 531
GlaI GCGC 1 cut(s) 13
GluI GCNGC 5 cut(s) 34, 235, 243, 359, 402
HaeIII GGCC 3 cut(s) 411, 468, 511
HapII CCGG 5 cut(s) 110, 303, 362, 413, 469
HgaI GACGC 1 cut(s) 308
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 2 cut(s) 212, 479
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 152, 168, 177, 453
HpaII CCGG 5 cut(s) 110, 303, 362, 413, 469
HphI GGTGA 3 cut(s) 287, 317, 391
Hpy166II GTNNAC 3 cut(s) 115, 217, 262
Hpy188I TCNGA 3 cut(s) 157, 173, 196
Hpy8I GTNNAC 3 cut(s) 115, 217, 262
Hpy99I CGWCG 3 cut(s) 119, 131, 134
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 4 cut(s) 259, 368, 419, 433
HpyCH4IV ACGT 4 cut(s) 54, 90, 279, 514
HpyCH4V TGCA 2 cut(s) 20, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 4 cut(s) 54, 90, 279, 514
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 2 cut(s) 212, 479
HspAI GCGC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 398, 494
Lsp1109I GCAGC 2 cut(s) 246, 370
MaeI CTAG 1 cut(s) 531
MaeII ACGT 4 cut(s) 54, 90, 279, 514
MaeIII GTNAC 1 cut(s) 275
MbiI CCGCTC 1 cut(s) 401
MboII GAAGA 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 3 cut(s) 373, 382, 540
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 4 cut(s) 91, 205, 472, 554
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 5 cut(s) 110, 303, 362, 413, 469
MspR9I CCNGG 2 cut(s) 413, 462
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 413
NlaIII CATG 2 cut(s) 212, 479
NlaIV GGNNCC 1 cut(s) 473
NmuCI GTSAC 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 3 cut(s) 152, 168, 453
PkrI GCNGC 5 cut(s) 35, 236, 244, 360, 403
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
Ppu21I YACGTR 2 cut(s) 55, 91
Psp124BI GAGCTC 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 473
PspPI GGNCC 1 cut(s) 410
RsaI GTAC 2 cut(s) 89, 216
RsaNI GTAC 2 cut(s) 88, 215
SacI GAGCTC 1 cut(s) 491
SalI GTCGAC 1 cut(s) 113
SatI GCNGC 5 cut(s) 34, 235, 243, 359, 402
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 413, 462
SduI GDGCHC 1 cut(s) 491
SetI ASST 7 cut(s) 57, 93, 216, 267, 282, 491, 517
SfcI CTRYAG 1 cut(s) 550
SgrAI CRCCGGYG 1 cut(s) 302
SnaBI TACGTA 1 cut(s) 55
Sse9I AATT 3 cut(s) 373, 382, 540
SsiI CCGC 6 cut(s) 33, 202, 222, 243, 401, 494
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 1 cut(s) 491
StyD4I CCNGG 2 cut(s) 411, 460
TaaI ACNGT 4 cut(s) 259, 368, 419, 433
TaiI ACGT 4 cut(s) 57, 93, 282, 517
TaqI TCGA 3 cut(s) 114, 230, 322
TasI AATT 3 cut(s) 373, 382, 540
TauI GCSGC 3 cut(s) 36, 245, 404
TfiI GAWTC 3 cut(s) 152, 168, 453
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 2 cut(s) 234, 358
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 535
XapI RAATTY 2 cut(s) 373, 540
XmiI GTMKAC 2 cut(s) 114, 261
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.