Rroxscaffold_3G00233630

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017200
Physical Location & Seq
Forward (+)
19718041 .. 19722072
4032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233630.1

Sequence Viewer

Length: 1803 bp
ATGTTGTGTGACCTGAGCTCTGATCAAGAAGAGGCTCAAAATGGGGCATGTTCATGGTGCATGTACCTGAAGCTGATGGATGAGTTCCCTTTTAGAGATGTTCTATGTGTTGGACCGTCTGACAATGGGCTTTTCGCCTTTTGTACTGTTTTTCTTTTTCTTGATGCTGCAAATGGGGAAGCTCATCACCACAAGTTTGTGGTAAAGTCGTCTTCTTATAGTCGACTATGTAGTAGTAAGGACATCTTGACTGTGAATGGGAGATTCCCAGGGCCAGCTTTGAAAGCTCACAGAGGGGATAAAATGGTTATTGAAGTTCATAACAAGGCAAATTTTAACATCACTCTTCATTGGCACGGAGTTAGACTAGTAAGAAATCCTTGGTCGGATGGACCAGAGTATATCACACAATGCCCTATACAGCCAGGCAACAAGTACACCTACAGAATTGAGTTTACTACAGAAGAAGGAACAATATGGTGGCATGCGCATAGTGGATGGGCAAGAGCGACGGTTCATGGAGCCATTTTTGTTTATCCCAAATCTGGATCAAGCTATCCTTTTCCGAAACCTTATGCCGAGGTCCCTATCATACTAGGTGAGTGGTGGAAGAGAGATGTCATGGAGATACCAAGTAATGCAAATTTAACAGGAGGAGAACCTATACTCTCAGATGCCTATACTATAAATGGAGAACCAGGCTTTCTATATCCATGCTCCAAAAAAGGGACCTTTAATATGCTAGTTGAACATGGAAAAACCTATCTTCTTCGGATCATTAGTGCGGTAATGGACGAAGAGCTATTCTTCGGCATTGCACGTCACAAGCTGATTTTAGTCGGAAAAGATGGTTCCTATACAAAACAAGTTAAAACCTCCTACATAATGATAGCCCCTGGCCAATCCATGGACCTGTTACTAGAAGCAAACCAACCTCATGGGCTCTATGTCATGGCTGCAAGAGCATATTCAAGCGCCATTGGAGCTGGTTTTGACAAGACCATGACATCTGCCATTGTTAAATATCATGGTTCAGATGATCACGACCACCAGCCTCGAGGACGTCCTGCTTTCCCACATCTTCCACCCTATAACAGAACACAAGCAGCAACAGACTTTACCAAGCAATTTAGGAGCCTTGCAACAAAAGACCACCCTACCAAAGTCCCATTACAAGTAGACACCCACTTGTTTTTTACCATATCCGTAAACCTACTTAACTGCAGTAATAAACCGTGCACTGGTCCCTTTGGGAAAAGATTTTCAGCTAGTGTCAACAACATAAGCTTTGTCATCCCACCGTCGATTGACATCCTTCGAGCTTACTATTATAAAATTCCGGGGGTATTCGAGAAGGATTTTCCAGAAAAACCGCCAAAGGAATTCAATTACACTGGTGATGATCTTCCAGATAGACTTTTGGCACCTTCCTATGGGACTAAGGTGATGCTTTTGAAGTACAATGCAAGTGTTGAGCTGGTTTTGCAAGGGACCAATGTGTTAGCAAGTGATAACCATCCTGTACATTTACATGGATATAGCTTCTATGTTGTCGGCTCCGGGTTTGGAAATTTCAACCCTAAACAGGATCCTTTGAGATACAATCTTGTTGATCCTCCAGAGGAGAGTACTGTTGGAGTTCCTAAAAATGGCTGGGTCGCAATCCGATTCAGAGCAGATAATCCAGGTAATGATCATGACTTTACTAGTATTCTTTTCCGGCGTGTGGTTGATGCATTGTCACATAGAGCGTCATCAAACATGGGGAATGTCTATGGTGTTCCTAGTCCAAAATGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

600

Amino Acids

67.14

Weight (kDa)

7.93

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 68 - 182 1.7e-39 Multicopper oxidase
Cu-oxidase PF00394 194 - 345 3.3e-35 Multicopper oxidase
Cu-oxidase_2 PF07731 453 - 563 1.3e-28 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09360
fragaria_vesca FvH4_5g30720
malus_domestica MD15G1412600.v1.1
prunus_persica Prupe.1G559300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0225621
rosa_laevigata RLG00000001800
rosa_multiflora Rmu_co8516127.1_g000001
rosa_roxburghii Rroxscaffold_3G00233630
rosa_rugosa Rorug07G0231900
rosa_samantha Rh7AG371900 Rh7BG365800 Rh7DG376600
rosa_wichuraiana Rw7G031780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1332
AatII GACGTC 1 cut(s) 1066
AbsI CCTCGAGG 1 cut(s) 1056
Acc16I TGCGCA 1 cut(s) 489
AccB1I GGYRCC 1 cut(s) 1423
AccB7I CCANNNNNTGG 1 cut(s) 907
AccI GTMKAC 2 cut(s) 223, 1179
AciI CCGC 2 cut(s) 785, 1373
AclWI GGATC 5 cut(s) 556, 782, 1583, 1596, 1607
AcoI YGGCCR 1 cut(s) 898
AcsI RAATTY 5 cut(s) 331, 643, 1335, 1382, 1570
AcuI CTGAAG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 1063
AfaI GTAC 6 cut(s) 65, 145, 437, 1460, 1524, 1630
AfiI CCNNNNNNNGG 8 cut(s) 545, 726, 907, 1241, 1433, 1585, 1649, 1726
AgsI TTSAA 7 cut(s) 283, 314, 749, 972, 1387, 1456, 1576
AhlI ACTAGT 2 cut(s) 367, 1706
AjiI CACGTC 1 cut(s) 821
AjnI CCWGG 5 cut(s) 268, 424, 697, 895, 1684
Alw21I GWGCWC 2 cut(s) 20, 1241
Alw44I GTGCAC 1 cut(s) 1237
AlwI GGATC 5 cut(s) 556, 782, 1583, 1596, 1607
Ama87I CYCGRG 1 cut(s) 1056
AoxI GGCC 2 cut(s) 272, 898
ApaLI GTGCAC 1 cut(s) 1237
ApeKI GCWGC 3 cut(s) 167, 956, 1106
ApoI RAATTY 5 cut(s) 331, 643, 1335, 1382, 1570
AspLEI GCGC 2 cut(s) 490, 977
AspS9I GGNCC 8 cut(s) 113, 272, 392, 583, 729, 910, 1244, 1491
AsuC2I CCSGG 2 cut(s) 1341, 1561
AsuHPI GGTGA 4 cut(s) 179, 611, 1409, 1456
AvaI CYCGRG 1 cut(s) 1056
AvaII GGWCC 7 cut(s) 113, 392, 583, 729, 910, 1244, 1491
BaeGI GKGCMC 1 cut(s) 1241
BalI TGGCCA 1 cut(s) 900
BamHI GGATCC 1 cut(s) 1588
BanI GGYRCC 1 cut(s) 1423
BanII GRGCYC 2 cut(s) 20, 945
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 2 cut(s) 20, 1241
BbvI GCAGC 3 cut(s) 154, 943, 1118
BccI CCATC 5 cut(s) 70, 383, 492, 842, 1524
BciT130I CCWGG 5 cut(s) 270, 426, 699, 897, 1686
BclI TGATCA 3 cut(s) 22, 1039, 1693
BcnI CCSGG 2 cut(s) 1341, 1561
BcuI ACTAGT 2 cut(s) 367, 1706
BfaI CTAG 7 cut(s) 368, 596, 743, 920, 1269, 1707, 1785
BfmI CTRYAG 3 cut(s) 442, 459, 1222
BfoI RGCGCY 1 cut(s) 978
BisI GCNGC 3 cut(s) 168, 957, 1107
BlsI GCNGC 3 cut(s) 169, 958, 1108
BmcAI AGTACT 1 cut(s) 1630
Bme1390I CCNGG 7 cut(s) 270, 426, 699, 897, 1341, 1561, 1686
Bme18I GGWCC 7 cut(s) 113, 392, 583, 729, 910, 1244, 1491
BmeT110I CYCGRG 1 cut(s) 1056
BmgBI CACGTC 1 cut(s) 821
BmgT120I GGNCC 8 cut(s) 113, 272, 392, 583, 729, 910, 1244, 1491
BmrFI CCNGG 7 cut(s) 270, 426, 699, 897, 1341, 1561, 1686
BmsI GCATC 4 cut(s) 154, 664, 1437, 1723
BpiI GAAGAC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 1602
Bpu10I CCTNAGC 1 cut(s) 14
BpuMI CCSGG 2 cut(s) 1341, 1561
BsaBI GATNNNNATC 2 cut(s) 1310, 1515
BsaHI GRCGYC 1 cut(s) 1063
BsaJI CCNNGG 7 cut(s) 268, 269, 380, 579, 895, 906, 1340
Bsc4I CCNNNNNNNGG 8 cut(s) 545, 726, 907, 1241, 1433, 1585, 1649, 1726
Bse1I ACTGG 2 cut(s) 1246, 1399
Bse3DI GCAATG 1 cut(s) 813
Bse8I GATNNNNATC 2 cut(s) 1310, 1515
BseBI CCWGG 5 cut(s) 270, 426, 699, 897, 1686
BseDI CCNNGG 7 cut(s) 268, 269, 380, 579, 895, 906, 1340
BseGI GGATG 6 cut(s) 85, 394, 503, 1293, 1311, 1516
BseJI GATNNNNATC 2 cut(s) 1310, 1515
BseLI CCNNNNNNNGG 8 cut(s) 545, 726, 907, 1241, 1433, 1585, 1649, 1726
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 2 cut(s) 5, 684
BseNI ACTGG 2 cut(s) 1246, 1399
BseRI GAGGAG 2 cut(s) 669, 1637
BseSI GKGCMC 1 cut(s) 1241
BseXI GCAGC 3 cut(s) 154, 943, 1118
BseYI CCCAGC 1 cut(s) 1653
BshFI GGCC 2 cut(s) 274, 900
BshNI GGYRCC 1 cut(s) 1423
BsiHKAI GWGCWC 2 cut(s) 20, 1241
BsiHKCI CYCGRG 1 cut(s) 1056
BsiSI CCGG 3 cut(s) 1340, 1560, 1720
BslFI GGGAC 6 cut(s) 569, 742, 1151, 1230, 1450, 1504
BslI CCNNNNNNNGG 8 cut(s) 545, 726, 907, 1241, 1433, 1585, 1649, 1726
BsmFI GGGAC 6 cut(s) 569, 742, 1151, 1230, 1450, 1504
BsnI GGCC 2 cut(s) 274, 900
BsoBI CYCGRG 1 cut(s) 1056
Bsp1286I GDGCHC 3 cut(s) 20, 945, 1241
Bsp1407I TGTACA 1 cut(s) 1522
Bsp143I GATC 8 cut(s) 22, 548, 774, 1039, 1402, 1588, 1612, 1693
Bsp19I CCATGG 1 cut(s) 906
BspACI CCGC 2 cut(s) 785, 1373
BspANI GGCC 2 cut(s) 274, 900
BspCNI CTCAG 2 cut(s) 6, 683
BspHI TCATGA 1 cut(s) 1696
BspMAI CTGCAG 1 cut(s) 1226
BspPI GGATC 5 cut(s) 556, 782, 1583, 1596, 1607
BspQI GCTCTTC 1 cut(s) 792
BspT107I GGYRCC 1 cut(s) 1423
BsrDI GCAATG 1 cut(s) 813
BsrGI TGTACA 1 cut(s) 1522
BsrI ACTGG 2 cut(s) 1246, 1399
BssECI CCNNGG 7 cut(s) 268, 269, 380, 579, 895, 906, 1340
BssMI GATC 8 cut(s) 22, 548, 774, 1039, 1402, 1588, 1612, 1693
BssNI GRCGYC 1 cut(s) 1063
BssT1I CCWWGG 2 cut(s) 380, 906
Bst2UI CCWGG 5 cut(s) 270, 426, 699, 897, 1686
Bst4CI ACNGT 7 cut(s) 117, 148, 253, 514, 1236, 1302, 1633
Bst6I CTCTTC 4 cut(s) 24, 351, 605, 792
BstACI GRCGYC 1 cut(s) 1063
BstAUI TGTACA 1 cut(s) 1522
BstC8I GCNNGC 2 cut(s) 276, 486
BstDEI CTNAG 3 cut(s) 14, 670, 1440
BstDSI CCRYGG 1 cut(s) 906
BstF5I GGATG 6 cut(s) 85, 394, 503, 1293, 1311, 1516
BstH2I RGCGCY 1 cut(s) 978
BstHHI GCGC 2 cut(s) 490, 977
BstKTI GATC 8 cut(s) 25, 551, 777, 1042, 1405, 1591, 1615, 1696
BstMBI GATC 8 cut(s) 22, 548, 774, 1039, 1402, 1588, 1612, 1693
BstMWI GCNNNNNNNGC 4 cut(s) 284, 962, 983, 1483
BstNI CCWGG 5 cut(s) 270, 426, 699, 897, 1686
BstNSI RCATGY 3 cut(s) 51, 64, 488
BstSCI CCNGG 7 cut(s) 268, 424, 697, 895, 1339, 1559, 1684
BstSFI CTRYAG 3 cut(s) 442, 459, 1222
BstSLI GKGCMC 1 cut(s) 1241
BstV1I GCAGC 3 cut(s) 154, 943, 1118
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 1588
BstXI CCANNNNNNTGG 1 cut(s) 938
BstYI RGATCY 1 cut(s) 1588
BsuRI GGCC 2 cut(s) 274, 900
BtgI CCRYGG 1 cut(s) 906
BtrI CACGTC 1 cut(s) 821
BtsCI GGATG 6 cut(s) 85, 394, 503, 1293, 1311, 1516
BtsIMutI CAGTG 2 cut(s) 1239, 1392
Cac8I GCNNGC 2 cut(s) 276, 486
CciI TCATGA 1 cut(s) 1696
CfoI GCGC 2 cut(s) 490, 977
Cfr13I GGNCC 8 cut(s) 113, 272, 392, 583, 729, 910, 1244, 1491
CseI GACGC 1 cut(s) 1740
Csp6I GTAC 6 cut(s) 64, 144, 436, 1459, 1523, 1629
CviQI GTAC 6 cut(s) 64, 144, 436, 1459, 1523, 1629
DdeI CTNAG 3 cut(s) 14, 670, 1440
DpnI GATC 8 cut(s) 24, 550, 776, 1041, 1404, 1590, 1614, 1695
DpnII GATC 8 cut(s) 22, 548, 774, 1039, 1402, 1588, 1612, 1693
EaeI YGGCCR 1 cut(s) 898
Eam1104I CTCTTC 4 cut(s) 24, 351, 605, 792
EarI CTCTTC 4 cut(s) 24, 351, 605, 792
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 2 cut(s) 380, 906
Eco24I GRGCYC 2 cut(s) 20, 945
Eco47I GGWCC 7 cut(s) 113, 392, 583, 729, 910, 1244, 1491
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 1056
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 2 cut(s) 583, 729
EcoRI GAATTC 1 cut(s) 1382
EcoRII CCWGG 5 cut(s) 268, 424, 697, 895, 1684
EcoT14I CCWWGG 2 cut(s) 380, 906
EcoT22I ATGCAT 1 cut(s) 1738
EcoT38I GRGCYC 2 cut(s) 20, 945
ErhI CCWWGG 2 cut(s) 380, 906
FalI AAGNNNNNCTT 6 cut(s) 230, 262, 364, 396, 544, 576
FaqI GGGAC 6 cut(s) 569, 742, 1151, 1230, 1450, 1504
FbaI TGATCA 3 cut(s) 22, 1039, 1693
FblI GTMKAC 2 cut(s) 223, 1179
Fnu4HI GCNGC 3 cut(s) 168, 957, 1107
FokI GGATG 6 cut(s) 92, 401, 510, 1280, 1298, 1503
FriOI GRGCYC 2 cut(s) 20, 945
Fsp4HI GCNGC 3 cut(s) 168, 957, 1107
FspAI RTGCGCAY 1 cut(s) 489
FspBI CTAG 7 cut(s) 368, 596, 743, 920, 1269, 1707, 1785
FspI TGCGCA 1 cut(s) 489
GlaI GCGC 2 cut(s) 489, 976
GluI GCNGC 3 cut(s) 168, 957, 1107
GsaI CCCAGC 1 cut(s) 1657
GsuI CTGGAG 1 cut(s) 1602
HaeII RGCGCY 1 cut(s) 978
HaeIII GGCC 2 cut(s) 274, 900
HapII CCGG 3 cut(s) 1340, 1560, 1720
HgaI GACGC 1 cut(s) 1740
HhaI GCGC 2 cut(s) 490, 977
Hin1I GRCGYC 1 cut(s) 1063
Hin6I GCGC 2 cut(s) 488, 975
HinP1I GCGC 2 cut(s) 488, 975
HincII GTYRAC 2 cut(s) 224, 1276
HindII GTYRAC 2 cut(s) 224, 1276
HindIII AAGCTT 1 cut(s) 1285
HinfI GANTC 2 cut(s) 264, 1668
HpaII CCGG 3 cut(s) 1340, 1560, 1720
HphI GGTGA 4 cut(s) 179, 611, 1409, 1456
Hpy166II GTNNAC 7 cut(s) 224, 438, 456, 1180, 1210, 1239, 1276
Hpy8I GTNNAC 7 cut(s) 224, 438, 456, 1180, 1210, 1239, 1276
Hpy99I CGWCG 2 cut(s) 514, 1306
HpyAV CCTTC 4 cut(s) 461, 1325, 1348, 1437
HpyCH4III ACNGT 7 cut(s) 117, 148, 253, 514, 1236, 1302, 1633
HpyCH4IV ACGT 2 cut(s) 820, 1063
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 962, 983, 1483
HpyF3I CTNAG 3 cut(s) 14, 670, 1440
HpySE526I ACGT 2 cut(s) 820, 1063
Hsp92I GRCGYC 1 cut(s) 1063
HspAI GCGC 2 cut(s) 488, 975
Ksp22I TGATCA 3 cut(s) 22, 1039, 1693
Kzo9I GATC 8 cut(s) 22, 548, 774, 1039, 1402, 1588, 1612, 1693
LguI GCTCTTC 1 cut(s) 792
LmnI GCTCC 5 cut(s) 521, 722, 983, 1134, 1562
Lsp1109I GCAGC 3 cut(s) 154, 943, 1118
LweI GCATC 4 cut(s) 154, 664, 1437, 1723
MaeI CTAG 7 cut(s) 368, 596, 743, 920, 1269, 1707, 1785
MaeII ACGT 2 cut(s) 820, 1063
MaeIII GTNAC 4 cut(s) 8, 821, 915, 1740
MalI GATC 8 cut(s) 24, 550, 776, 1041, 1404, 1590, 1614, 1695
MboI GATC 8 cut(s) 22, 548, 774, 1039, 1402, 1588, 1612, 1693
MflI RGATCY 1 cut(s) 1588
MhlI GDGCHC 3 cut(s) 20, 945, 1241
MlsI TGGCCA 1 cut(s) 900
MluCI AATT 8 cut(s) 331, 447, 643, 1127, 1335, 1382, 1387, 1570
MluNI TGGCCA 1 cut(s) 900
MmeI TCCRAC 4 cut(s) 91, 366, 820, 1615
Mox20I TGGCCA 1 cut(s) 900
Mph1103I ATGCAT 1 cut(s) 1738
MscI TGGCCA 1 cut(s) 900
MseI TTAA 6 cut(s) 336, 647, 735, 870, 1020, 1218
MslI CAYNNNNRTG 2 cut(s) 52, 1530
Msp20I TGGCCA 1 cut(s) 900
MspI CCGG 3 cut(s) 1340, 1560, 1720
MspR9I CCNGG 7 cut(s) 270, 426, 699, 897, 1341, 1561, 1686
MvaI CCWGG 5 cut(s) 270, 426, 699, 897, 1686
MwoI GCNNNNNNNGC 4 cut(s) 284, 962, 983, 1483
NciI CCSGG 2 cut(s) 1341, 1561
NcoI CCATGG 1 cut(s) 906
NdeII GATC 8 cut(s) 22, 548, 774, 1039, 1402, 1588, 1612, 1693
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 3 cut(s) 8, 821, 1740
NsbI TGCGCA 1 cut(s) 489
NsiI ATGCAT 1 cut(s) 1738
NspI RCATGY 3 cut(s) 51, 64, 488
PaeI GCATGC 1 cut(s) 488
PaeR7I CTCGAG 1 cut(s) 1056
PagI TCATGA 1 cut(s) 1696
PasI CCCWGGG 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 792
PfeI GAWTC 2 cut(s) 264, 1668
PflMI CCANNNNNTGG 1 cut(s) 907
PkrI GCNGC 3 cut(s) 169, 958, 1108
PpuMI RGGWCCY 2 cut(s) 583, 729
PsiI TTATAA 1 cut(s) 1332
Psp124BI GAGCTC 1 cut(s) 20
Psp5II RGGWCCY 2 cut(s) 583, 729
Psp6I CCWGG 5 cut(s) 268, 424, 697, 895, 1684
PspFI CCCAGC 1 cut(s) 1653
PspGI CCWGG 5 cut(s) 268, 424, 697, 895, 1684
PspPI GGNCC 8 cut(s) 113, 272, 392, 583, 729, 910, 1244, 1491
PspPPI RGGWCCY 2 cut(s) 583, 729
PspXI VCTCGAGB 1 cut(s) 1056
PstI CTGCAG 1 cut(s) 1226
PsuI RGATCY 1 cut(s) 1588
RsaI GTAC 6 cut(s) 65, 145, 437, 1460, 1524, 1630
RsaNI GTAC 6 cut(s) 64, 144, 436, 1459, 1523, 1629
RseI CAYNNNNRTG 2 cut(s) 52, 1530
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 6 cut(s) 336, 647, 735, 870, 1020, 1218
SatI GCNGC 3 cut(s) 168, 957, 1107
Sau3AI GATC 8 cut(s) 22, 548, 774, 1039, 1402, 1588, 1612, 1693
Sau96I GGNCC 8 cut(s) 113, 272, 392, 583, 729, 910, 1244, 1491
ScaI AGTACT 1 cut(s) 1630
ScrFI CCNGG 7 cut(s) 270, 426, 699, 897, 1341, 1561, 1686
SduI GDGCHC 3 cut(s) 20, 945, 1241
SfaNI GCATC 4 cut(s) 154, 664, 1437, 1723
SfcI CTRYAG 3 cut(s) 442, 459, 1222
Sfr274I CTCGAG 1 cut(s) 1056
SinI GGWCC 7 cut(s) 113, 392, 583, 729, 910, 1244, 1491
SlaI CTCGAG 1 cut(s) 1056
SmiMI CAYNNNNRTG 2 cut(s) 52, 1530
SmlI CTYRAG 1 cut(s) 1056
SmoI CTYRAG 1 cut(s) 1056
SpeI ACTAGT 2 cut(s) 367, 1706
SphI GCATGC 1 cut(s) 488
Sse9I AATT 8 cut(s) 331, 447, 643, 1127, 1335, 1382, 1387, 1570
SsiI CCGC 2 cut(s) 785, 1373
SspMI CTAG 7 cut(s) 368, 596, 743, 920, 1269, 1707, 1785
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 7 cut(s) 268, 424, 697, 895, 1339, 1559, 1684
StyI CCWWGG 2 cut(s) 380, 906
TaaI ACNGT 7 cut(s) 117, 148, 253, 514, 1236, 1302, 1633
TaiI ACGT 2 cut(s) 823, 1066
TaqI TCGA 5 cut(s) 223, 1057, 1304, 1318, 1350
TasI AATT 8 cut(s) 331, 447, 643, 1127, 1335, 1382, 1387, 1570
TatI WGTACW 5 cut(s) 143, 435, 1458, 1522, 1628
TfiI GAWTC 2 cut(s) 264, 1668
Tru1I TTAA 6 cut(s) 336, 647, 735, 870, 1020, 1218
Tru9I TTAA 6 cut(s) 336, 647, 735, 870, 1020, 1218
TscAI CASTG 2 cut(s) 1246, 1399
TseFI GTSAC 3 cut(s) 8, 821, 1740
TseI GCWGC 3 cut(s) 167, 956, 1106
Tsp45I GTSAC 3 cut(s) 8, 821, 1740
TspDTI ATGAA 4 cut(s) 42, 308, 338, 506
TspGWI ACGGA 2 cut(s) 372, 1195
TspRI CASTG 2 cut(s) 1246, 1399
Van91I CCANNNNNTGG 1 cut(s) 907
VneI GTGCAC 1 cut(s) 1237
VpaK11BI GGWCC 7 cut(s) 113, 392, 583, 729, 910, 1244, 1491
XapI RAATTY 5 cut(s) 331, 643, 1335, 1382, 1570
XceI RCATGY 3 cut(s) 51, 64, 488
XhoI CTCGAG 1 cut(s) 1056
XmiI GTMKAC 2 cut(s) 223, 1179
XspI CTAG 7 cut(s) 368, 596, 743, 920, 1269, 1707, 1785
ZraI GACGTC 1 cut(s) 1064
ZrmI AGTACT 1 cut(s) 1630
Zsp2I ATGCAT 1 cut(s) 1738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.