Rmu_co8516127.1_g000001

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8516127.1
OG0017200
Physical Location & Seq
Reverse (-)
946 .. 1881
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8516127.1_g000001.1.cds

Sequence Viewer

Length: 936 bp
atggacgaagagctattcttcggcattgcacatcacaagctgattttagttggaaaagatggttcctatacaaaacaagttgaaacctcctacataatgatagcccctggccaatccatggacctgttactagaagcaaaccaacctcatgggctctatgtcatggctgcaagagcatattcaagcgccatcggagctggttttgacaagaccatgacatctgccattgttaaatatcatggttcagatgatcacgaccaccagcctcgaggacgtcctgctttcccacatcttccaccctataacagaacacaagcagcaacagactttaccaagcaatttaggagccttgcaacaaaagaccaccctaccaaagttccattacaagtagacacccacttgttttttaccatatccgtaaacctacttaactgcagtaataaaccgtgcactggtccctttgggaaaagattttcagctagtgtcaacaacataagctttgtcatgccaccgtcgattgacatccttcgagcttactattataaaattccgggggtattcgagaaggattttccagaaaaaccgccaaaggaattcaattacactggtgatgatcttccggagagatttttggcaccttcctatgggactaaggtgatgcttttgaagtacaatgcaagtgttgagctggttttgcaagggaccaatgtgttagcaagtgataaccatcctgtacatttacatggatatagcttctatgttgttggctccgggtttggaaatttcaaccctaaacaggatcctttgagatacaatcttgttgatcctcctgaggagagtactgttggagtacctaaaaatggctgggtcgcaatccgattcagagcagataatccaggtgatgatcatgactttactagtattcttttccggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

311

Amino Acids

34.78

Weight (kDa)

6.67

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09360
fragaria_vesca FvH4_5g30720
malus_domestica MD15G1412600.v1.1
prunus_persica Prupe.1G559300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0225621
rosa_laevigata RLG00000001800
rosa_multiflora Rmu_co8516127.1_g000001
rosa_roxburghii Rroxscaffold_3G00233630
rosa_rugosa Rorug07G0231900
rosa_samantha Rh7AG371900 Rh7BG365800 Rh7DG376600
rosa_wichuraiana Rw7G031780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AatII GACGTC 1 cut(s) 277
AbsI CCTCGAGG 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 634
AccB7I CCANNNNNTGG 1 cut(s) 118
AccI GTMKAC 1 cut(s) 390
AccIII TCCGGA 1 cut(s) 619
AciI CCGC 1 cut(s) 584
AclWI GGATC 3 cut(s) 794, 807, 818
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 3 cut(s) 546, 593, 781
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 4 cut(s) 671, 735, 841, 852
AfiI CCNNNNNNNGG 5 cut(s) 118, 452, 644, 796, 860
AgsI TTSAA 5 cut(s) 83, 183, 598, 667, 787
AhlI ACTAGT 1 cut(s) 917
AjnI CCWGG 2 cut(s) 106, 895
AluBI AGCT 8 cut(s) 13, 40, 197, 479, 498, 533, 688, 753
AluI AGCT 8 cut(s) 13, 40, 197, 479, 498, 533, 688, 753
Alw21I GWGCWC 1 cut(s) 452
Alw44I GTGCAC 1 cut(s) 448
AlwI GGATC 3 cut(s) 794, 807, 818
Ama87I CYCGRG 1 cut(s) 267
Aor13HI TCCGGA 1 cut(s) 619
AoxI GGCC 1 cut(s) 109
ApaLI GTGCAC 1 cut(s) 448
ApeKI GCWGC 2 cut(s) 167, 317
ApoI RAATTY 3 cut(s) 546, 593, 781
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 3 cut(s) 121, 455, 702
AsuC2I CCSGG 2 cut(s) 552, 772
AsuHPI GGTGA 3 cut(s) 620, 667, 911
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 3 cut(s) 121, 455, 702
AxyI CCTNAGG 1 cut(s) 831
BaeGI GKGCMC 1 cut(s) 452
BalI TGGCCA 1 cut(s) 111
BamHI GGATCC 1 cut(s) 799
BanI GGYRCC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 154, 329
BccI CCATC 3 cut(s) 53, 197, 735
BciT130I CCWGG 2 cut(s) 108, 897
BclI TGATCA 2 cut(s) 250, 904
BcnI CCSGG 2 cut(s) 552, 772
BcuI ACTAGT 1 cut(s) 917
BfaI CTAG 3 cut(s) 131, 480, 918
BfmI CTRYAG 1 cut(s) 433
BfoI RGCGCY 1 cut(s) 189
BisI GCNGC 2 cut(s) 168, 318
BlsI GCNGC 2 cut(s) 169, 319
BmcAI AGTACT 1 cut(s) 841
Bme1390I CCNGG 4 cut(s) 108, 552, 772, 897
Bme18I GGWCC 3 cut(s) 121, 455, 702
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 3 cut(s) 121, 455, 702
BmiI GGNNCC 7 cut(s) 64, 347, 457, 636, 703, 769, 801
BmrFI CCNGG 4 cut(s) 108, 552, 772, 897
BmsI GCATC 1 cut(s) 648
BpuMI CCSGG 2 cut(s) 552, 772
BsaBI GATNNNNATC 2 cut(s) 521, 726
BsaHI GRCGYC 1 cut(s) 274
BsaJI CCNNGG 3 cut(s) 106, 117, 551
BsaWI WCCGGW 2 cut(s) 619, 930
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 452, 644, 796, 860
Bse1I ACTGG 2 cut(s) 457, 610
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 1 cut(s) 24
Bse8I GATNNNNATC 2 cut(s) 521, 726
BseAI TCCGGA 1 cut(s) 619
BseBI CCWGG 2 cut(s) 108, 897
BseDI CCNNGG 3 cut(s) 106, 117, 551
BseGI GGATG 2 cut(s) 522, 727
BseJI GATNNNNATC 2 cut(s) 521, 726
BseLI CCNNNNNNNGG 5 cut(s) 118, 452, 644, 796, 860
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 2 cut(s) 457, 610
BseRI GAGGAG 1 cut(s) 848
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 2 cut(s) 154, 329
BseYI CCCAGC 1 cut(s) 864
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 634
BsiHKAI GWGCWC 1 cut(s) 452
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 4 cut(s) 551, 620, 771, 931
BslFI GGGAC 3 cut(s) 441, 661, 715
BslI CCNNNNNNNGG 5 cut(s) 118, 452, 644, 796, 860
BsmFI GGGAC 3 cut(s) 441, 661, 715
BsnI GGCC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 267
Bsp1286I GDGCHC 2 cut(s) 156, 452
Bsp13I TCCGGA 1 cut(s) 619
Bsp1407I TGTACA 1 cut(s) 733
Bsp143I GATC 5 cut(s) 250, 613, 799, 823, 904
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 584
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 823
BspEI TCCGGA 1 cut(s) 619
BspHI TCATGA 1 cut(s) 907
BspLI GGNNCC 7 cut(s) 64, 347, 457, 636, 703, 769, 801
BspMAI CTGCAG 1 cut(s) 437
BspPI GGATC 3 cut(s) 794, 807, 818
BspQI GCTCTTC 1 cut(s) 3
BspT107I GGYRCC 1 cut(s) 634
BsrDI GCAATG 1 cut(s) 24
BsrGI TGTACA 1 cut(s) 733
BsrI ACTGG 2 cut(s) 457, 610
BssECI CCNNGG 3 cut(s) 106, 117, 551
BssMI GATC 5 cut(s) 250, 613, 799, 823, 904
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 108, 897
Bst4CI ACNGT 3 cut(s) 447, 513, 844
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 274
BstAUI TGTACA 1 cut(s) 733
BstDEI CTNAG 2 cut(s) 651, 831
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 522, 727
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 5 cut(s) 253, 616, 802, 826, 907
BstMBI GATC 5 cut(s) 250, 613, 799, 823, 904
BstMWI GCNNNNNNNGC 3 cut(s) 173, 194, 694
BstNI CCWGG 2 cut(s) 108, 897
BstSCI CCNGG 4 cut(s) 106, 550, 770, 895
BstSFI CTRYAG 1 cut(s) 433
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 154, 329
BstX2I RGATCY 1 cut(s) 799
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 1 cut(s) 799
Bsu36I CCTNAGG 1 cut(s) 831
BsuRI GGCC 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 522, 727
BtsIMutI CAGTG 2 cut(s) 450, 603
CciI TCATGA 1 cut(s) 907
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 121, 455, 702
Csp6I GTAC 4 cut(s) 670, 734, 840, 851
CviAII CATG 8 cut(s) 118, 149, 163, 214, 239, 505, 743, 908
CviQI GTAC 4 cut(s) 670, 734, 840, 851
DdeI CTNAG 2 cut(s) 651, 831
DpnI GATC 5 cut(s) 252, 615, 801, 825, 906
DpnII GATC 5 cut(s) 250, 613, 799, 823, 904
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 3 cut(s) 121, 455, 702
Eco81I CCTNAGG 1 cut(s) 831
Eco88I CYCGRG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 593
EcoRII CCWGG 2 cut(s) 106, 895
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 8 cut(s) 121, 152, 166, 217, 242, 508, 746, 911
FaqI GGGAC 3 cut(s) 441, 661, 715
FatI CATG 8 cut(s) 117, 148, 162, 213, 238, 504, 742, 907
FbaI TGATCA 2 cut(s) 250, 904
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 168, 318
FokI GGATG 2 cut(s) 509, 714
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 168, 318
FspBI CTAG 3 cut(s) 131, 480, 918
GlaI GCGC 1 cut(s) 187
GluI GCNGC 2 cut(s) 168, 318
GsaI CCCAGC 1 cut(s) 868
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 111
HapII CCGG 4 cut(s) 551, 620, 771, 931
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 8 cut(s) 121, 152, 166, 217, 242, 508, 746, 911
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 496
HinfI GANTC 1 cut(s) 879
HpaII CCGG 4 cut(s) 551, 620, 771, 931
HphI GGTGA 3 cut(s) 620, 667, 911
Hpy166II GTNNAC 4 cut(s) 391, 421, 450, 487
Hpy188I TCNGA 4 cut(s) 194, 247, 878, 884
Hpy188III TCNNGA 6 cut(s) 254, 562, 575, 620, 830, 908
Hpy8I GTNNAC 4 cut(s) 391, 421, 450, 487
Hpy99I CGWCG 1 cut(s) 517
HpyAV CCTTC 3 cut(s) 536, 559, 648
HpyCH4III ACNGT 3 cut(s) 447, 513, 844
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 7 cut(s) 29, 170, 353, 435, 450, 677, 697
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 194, 694
HpyF3I CTNAG 2 cut(s) 651, 831
HpySE526I ACGT 1 cut(s) 274
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 8 cut(s) 121, 152, 166, 217, 242, 508, 746, 911
HspAI GCGC 1 cut(s) 186
Kpn2I TCCGGA 1 cut(s) 619
Ksp22I TGATCA 2 cut(s) 250, 904
Kzo9I GATC 5 cut(s) 250, 613, 799, 823, 904
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 3 cut(s) 194, 345, 773
Lsp1109I GCAGC 2 cut(s) 154, 329
LweI GCATC 1 cut(s) 648
MaeI CTAG 3 cut(s) 131, 480, 918
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 126
MalI GATC 5 cut(s) 252, 615, 801, 825, 906
MboI GATC 5 cut(s) 250, 613, 799, 823, 904
MboII GAAGA 4 cut(s) 10, 20, 284, 608
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 2 cut(s) 156, 452
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 5 cut(s) 338, 546, 593, 598, 781
MluNI TGGCCA 1 cut(s) 111
MmeI TCCRAC 2 cut(s) 31, 826
MnlI CCTC 6 cut(s) 97, 156, 263, 276, 826, 837
Mox20I TGGCCA 1 cut(s) 111
MroI TCCGGA 1 cut(s) 619
MscI TGGCCA 1 cut(s) 111
MseI TTAA 2 cut(s) 231, 429
MslI CAYNNNNRTG 1 cut(s) 741
Msp20I TGGCCA 1 cut(s) 111
MspI CCGG 4 cut(s) 551, 620, 771, 931
MspR9I CCNGG 4 cut(s) 108, 552, 772, 897
MvaI CCWGG 2 cut(s) 108, 897
MwoI GCNNNNNNNGC 3 cut(s) 173, 194, 694
NciI CCSGG 2 cut(s) 552, 772
NcoI CCATGG 1 cut(s) 117
NdeII GATC 5 cut(s) 250, 613, 799, 823, 904
NlaIII CATG 8 cut(s) 121, 152, 166, 217, 242, 508, 746, 911
NlaIV GGNNCC 7 cut(s) 64, 347, 457, 636, 703, 769, 801
PaeR7I CTCGAG 1 cut(s) 267
PagI TCATGA 1 cut(s) 907
PciSI GCTCTTC 1 cut(s) 3
PfeI GAWTC 1 cut(s) 879
PflMI CCANNNNNTGG 1 cut(s) 118
PkrI GCNGC 2 cut(s) 169, 319
PsiI TTATAA 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 106, 895
PspFI CCCAGC 1 cut(s) 864
PspGI CCWGG 2 cut(s) 106, 895
PspN4I GGNNCC 7 cut(s) 64, 347, 457, 636, 703, 769, 801
PspPI GGNCC 3 cut(s) 121, 455, 702
PspXI VCTCGAGB 1 cut(s) 267
PstI CTGCAG 1 cut(s) 437
PsuI RGATCY 1 cut(s) 799
RsaI GTAC 4 cut(s) 671, 735, 841, 852
RsaNI GTAC 4 cut(s) 670, 734, 840, 851
RseI CAYNNNNRTG 1 cut(s) 741
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 2 cut(s) 231, 429
SatI GCNGC 2 cut(s) 168, 318
Sau3AI GATC 5 cut(s) 250, 613, 799, 823, 904
Sau96I GGNCC 3 cut(s) 121, 455, 702
ScaI AGTACT 1 cut(s) 841
ScrFI CCNGG 4 cut(s) 108, 552, 772, 897
SduI GDGCHC 2 cut(s) 156, 452
SfaNI GCATC 1 cut(s) 648
SfcI CTRYAG 1 cut(s) 433
Sfr274I CTCGAG 1 cut(s) 267
SinI GGWCC 3 cut(s) 121, 455, 702
SlaI CTCGAG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
SpeI ACTAGT 1 cut(s) 917
Sse9I AATT 5 cut(s) 338, 546, 593, 598, 781
SsiI CCGC 1 cut(s) 584
SspMI CTAG 3 cut(s) 131, 480, 918
StyD4I CCNGG 4 cut(s) 106, 550, 770, 895
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 447, 513, 844
TaiI ACGT 1 cut(s) 277
TaqI TCGA 4 cut(s) 268, 515, 529, 561
TasI AATT 5 cut(s) 338, 546, 593, 598, 781
TatI WGTACW 3 cut(s) 669, 733, 839
TfiI GAWTC 1 cut(s) 879
Tru1I TTAA 2 cut(s) 231, 429
Tru9I TTAA 2 cut(s) 231, 429
TscAI CASTG 2 cut(s) 457, 610
TseI GCWGC 2 cut(s) 167, 317
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 2 cut(s) 457, 610
Van91I CCANNNNNTGG 1 cut(s) 118
VneI GTGCAC 1 cut(s) 448
VpaK11BI GGWCC 3 cut(s) 121, 455, 702
XapI RAATTY 3 cut(s) 546, 593, 781
XhoI CTCGAG 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 3 cut(s) 131, 480, 918
ZraI GACGTC 1 cut(s) 275
ZrmI AGTACT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.