Prupe.1G559300_v2.0.a1

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
45659721 .. 45662830
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G559300.1

Sequence Viewer

Length: 1707 bp
ATGGCTAATGGCATAGTGCATTTTGCTTTCTCTGTTCTTCAACTTTTTCTTATTTTTGATGCCGCAAATGGGAAAACCCATCGCCATAACTTTGTGGTGAAGTCATCTTCTTATACTCGACTATGTAGCACTAAAGACATCTTGACTGTGAATGGGCAATTTCCAGGGCCAAGTTTGAAAGCTCATAGAGGAGATAAAATGATCATTAAGGTCTATAACAAGGCAAACTACAATATCACTTTTCATTGGCATGGAATTAAGCAGCCAAGAAATCCCTGGTCAGATGGACCTGAGTATATTACACAGTGCCCGATTAGGCCAGGAAACAAGTACACTTACAAAATTGAGTTTACAACAGAAGAAGGAACAATGTGGTGGCATGCACACAGTGGATGGGCAAGAGCAACAGTTCATGGTGCCATTTTGGTCTATCCAAAGCCTGGTTCTCACTATCCCTTCTCCAAACCCTATGCAGAGGTTCCAATCATACTAGGTGAATGGTGGAAGAAAAATGTAATGGAGATACCAAGAAATGCAAATATAACAGGAGGAGAGCCTATATTGTCAGATGCATATACCATAAATGGGAAACCAGGCCATCTCTATCCATGCTCCAAATCAGGGATTTTCGAAATGACAGTGGAGCATGGAAAAACCTATCTGCTTCGGATAATTAGCGCAGTAATGGATGAAGAGCTTTTCTTTGGCATAGCAAACCACAAAATGATATTGGTAGGAAGAGACGGATCCTACACAAAACAAGTTGTGACCTCTTACATTATGATAGCTCCTGGCCAATCCATGGATGTTTTATTACAAGCAAACCAACCCCCAAGCTTCTATTTCATGGCTGCAAGAGCATATTCAAGTGCCATTGGAGCTGGTTTTGACAAAACCATGACAACGGCCATTCTCAAATACCAAGCTTCATACCATGAACCTCCCGAATTCCCTCATTATAAATTTCCACATCTGCCCCCTTATGATAGAACACAAGCATCAACTGACTTCACCAAGAGAATCAGGAGCCTTGCAACAAAAGATCACCCAACCAACGTCCCATTACATGTAAACACCCACCTCTTCTTCACCATTTCAGTAAACCTCCTTAATTGTAGTAACAAACCATGCACTGGTCCTTTTGGTAAAAGATTTGCTGCCAGTGTGAACAACATAAGCTTTGTCGCCCCATCCATCGACATACTTCGAGCTTACTACTATAAGATCCCGGGAGTTTTCGAGAATGATTTTCCCAAAAAACCCCCAATGGAATTTAATTATACCGGTGAAGATCTTCCTGAGAACCTGTTGACACCTTCCTACGGCACGAAGGTGGTGGTTTTGGAGTACAATGCGAGTGTTGAGCTGGTTTTGCAAGGAACTAATGTCCTAGCAAGTGATAACCATCCTGTGCATTTGCATGGATATAACTTTTATGTTGTTGGCTGGGGCTTTGGAAACTTCAATCCCAAGAAAGACCCTTTGAATTATAACCTTGTTGATCCCCCAGAGGAGAATACAGTTGGAGTCCATAAGAATGGTTGGGTTGCAATCAGATTCAGAGCTGATAATCCAGGTGTGTGGTTGATGCATTGTCACATAGAGCGCCACCAAACATGGGGAATGACTGTGGTATTCCTAGTCAAAAATGGTAATAGTCCTCAAAATAAAATTCTACCACCACCTCACGATTTGCCTACTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

569

Amino Acids

64.12

Weight (kDa)

8.98

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09360
fragaria_vesca FvH4_5g30720
malus_domestica MD15G1412600.v1.1
prunus_persica Prupe.1G559300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0225621
rosa_laevigata RLG00000001800
rosa_multiflora Rmu_co8516127.1_g000001
rosa_roxburghii Rroxscaffold_3G00233630
rosa_rugosa Rorug07G0231900
rosa_samantha Rh7AG371900 Rh7BG365800 Rh7DG376600
rosa_wichuraiana Rw7G031780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 960, 1491
AccB1I GGYRCC 1 cut(s) 416
AccB7I CCANNNNNTGG 3 cut(s) 440, 802, 1133
AciI CCGC 1 cut(s) 63
AclWI GGATC 4 cut(s) 741, 754, 1219, 1496
AcoI YGGCCR 2 cut(s) 793, 906
AcsI RAATTY 4 cut(s) 947, 962, 1271, 1671
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 2 cut(s) 332, 1349
AfiI CCNNNNNNNGG 8 cut(s) 69, 440, 585, 621, 802, 1133, 1322, 1618
AflIII ACRYGT 1 cut(s) 1066
AgeI ACCGGT 1 cut(s) 1283
AgsI TTSAA 5 cut(s) 41, 178, 867, 1465, 1486
AjnI CCWGG 7 cut(s) 163, 275, 319, 439, 592, 790, 1573
AjuI GAANNNNNNNTTGG 2 cut(s) 427, 459
AleI CACNNNNGTG 1 cut(s) 1331
Alw26I GTCTC 1 cut(s) 735
AlwI GGATC 4 cut(s) 741, 754, 1219, 1496
Ama87I CYCGRG 1 cut(s) 1228
AoxI GGCC 5 cut(s) 167, 317, 595, 793, 906
ApeKI GCWGC 3 cut(s) 262, 851, 1157
ApoI RAATTY 4 cut(s) 947, 962, 1271, 1671
AsiGI ACCGGT 1 cut(s) 1283
Asp700I GAANNNNTTC 1 cut(s) 1293
AspLEI GCGC 2 cut(s) 680, 1608
AspS9I GGNCC 3 cut(s) 167, 287, 1136
AsuC2I CCSGG 2 cut(s) 1229, 1230
AsuHPI GGTGA 6 cut(s) 109, 506, 1003, 1037, 1081, 1298
AsuII TTCGAA 1 cut(s) 630
AvaI CYCGRG 1 cut(s) 1228
AvaII GGWCC 2 cut(s) 287, 1136
BaeGI GKGCMC 1 cut(s) 311
BalI TGGCCA 1 cut(s) 795
BamHI GGATCC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 416
BbvI GCAGC 3 cut(s) 274, 838, 1144
BccI CCATC 7 cut(s) 87, 278, 387, 606, 1198, 1202, 1413
BceAI ACGGC 2 cut(s) 921, 1339
BciT130I CCWGG 7 cut(s) 165, 277, 321, 441, 594, 792, 1575
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 2 cut(s) 1229, 1230
BcoDI GTCTC 1 cut(s) 735
BfaI CTAG 3 cut(s) 491, 1391, 1640
BfoI RGCGCY 1 cut(s) 1609
BglII AGATCT 1 cut(s) 1291
BisI GCNGC 4 cut(s) 63, 263, 852, 1158
BlsI GCNGC 4 cut(s) 64, 264, 853, 1159
Bme1390I CCNGG 9 cut(s) 165, 277, 321, 441, 594, 792, 1229, 1230, 1575
Bme18I GGWCC 2 cut(s) 287, 1136
BmeT110I CYCGRG 1 cut(s) 1228
BmgT120I GGNCC 3 cut(s) 167, 287, 1136
BmiI GGNNCC 4 cut(s) 418, 480, 748, 1028
BmrFI CCNGG 9 cut(s) 165, 277, 321, 441, 594, 792, 1229, 1230, 1575
BmsI GCATC 4 cut(s) 49, 559, 1007, 1578
Bpu14I TTCGAA 1 cut(s) 630
BpuMI CCSGG 2 cut(s) 1229, 1230
BsaBI GATNNNNATC 1 cut(s) 1404
BsaJI CCNNGG 4 cut(s) 164, 275, 801, 1228
BsaWI WCCGGW 1 cut(s) 1283
Bsc4I CCNNNNNNNGG 8 cut(s) 69, 440, 585, 621, 802, 1133, 1322, 1618
Bse118I RCCGGY 1 cut(s) 1283
Bse1I ACTGG 2 cut(s) 1138, 1161
Bse8I GATNNNNATC 1 cut(s) 1404
BseBI CCWGG 7 cut(s) 165, 277, 321, 441, 594, 792, 1575
BseDI CCNNGG 4 cut(s) 164, 275, 801, 1228
BseGI GGATG 5 cut(s) 398, 694, 811, 1190, 1405
BseJI GATNNNNATC 1 cut(s) 1404
BseLI CCNNNNNNNGG 8 cut(s) 69, 440, 585, 621, 802, 1133, 1322, 1618
BseMII CTCAG 2 cut(s) 282, 1290
BseNI ACTGG 2 cut(s) 1138, 1161
BseRI GAGGAG 3 cut(s) 204, 564, 1526
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 3 cut(s) 274, 838, 1144
BseYI CCCAGC 1 cut(s) 1446
BshFI GGCC 5 cut(s) 169, 319, 597, 795, 908
BshNI GGYRCC 1 cut(s) 416
BshTI ACCGGT 1 cut(s) 1283
BsiHKCI CYCGRG 1 cut(s) 1228
BsiSI CCGG 2 cut(s) 1229, 1284
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 8 cut(s) 69, 440, 585, 621, 802, 1133, 1322, 1618
BsmAI GTCTC 1 cut(s) 735
BsmBI CGTCTC 1 cut(s) 735
BsmFI GGGAC 1 cut(s) 1043
BsnI GGCC 5 cut(s) 169, 319, 597, 795, 908
BsoBI CYCGRG 1 cut(s) 1228
Bsp119I TTCGAA 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 6 cut(s) 201, 746, 1042, 1224, 1291, 1501
Bsp19I CCATGG 1 cut(s) 801
BspACI CCGC 1 cut(s) 63
BspANI GGCC 5 cut(s) 169, 319, 597, 795, 908
BspCNI CTCAG 2 cut(s) 283, 1291
BspLI GGNNCC 4 cut(s) 418, 480, 748, 1028
BspPI GGATC 4 cut(s) 741, 754, 1219, 1496
BspQI GCTCTTC 1 cut(s) 687
BspT104I TTCGAA 1 cut(s) 630
BspT107I GGYRCC 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 1283
BsrI ACTGG 2 cut(s) 1138, 1161
BssAI RCCGGY 1 cut(s) 1283
BssECI CCNNGG 4 cut(s) 164, 275, 801, 1228
BssMI GATC 6 cut(s) 201, 746, 1042, 1224, 1291, 1501
BssT1I CCWWGG 1 cut(s) 801
Bst2UI CCWGG 7 cut(s) 165, 277, 321, 441, 594, 792, 1575
Bst4CI ACNGT 7 cut(s) 148, 306, 389, 409, 640, 1522, 1630
Bst6I CTCTTC 3 cut(s) 687, 733, 1088
BstBI TTCGAA 1 cut(s) 630
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 291, 1299
BstDSI CCRYGG 1 cut(s) 801
BstF5I GGATG 5 cut(s) 398, 694, 811, 1190, 1405
BstH2I RGCGCY 1 cut(s) 1609
BstHHI GCGC 2 cut(s) 680, 1608
BstKTI GATC 6 cut(s) 204, 749, 1045, 1227, 1294, 1504
BstMAI GTCTC 1 cut(s) 735
BstMBI GATC 6 cut(s) 201, 746, 1042, 1224, 1291, 1501
BstMWI GCNNNNNNNGC 3 cut(s) 857, 878, 1372
BstNI CCWGG 7 cut(s) 165, 277, 321, 441, 594, 792, 1575
BstNSI RCATGY 2 cut(s) 383, 1070
BstSCI CCNGG 9 cut(s) 163, 275, 319, 439, 592, 790, 1227, 1228, 1573
BstSLI GKGCMC 1 cut(s) 311
BstV1I GCAGC 3 cut(s) 274, 838, 1144
BstX2I RGATCY 3 cut(s) 746, 1224, 1291
BstXI CCANNNNNNTGG 2 cut(s) 1538, 1581
BstYI RGATCY 3 cut(s) 746, 1224, 1291
BsuRI GGCC 5 cut(s) 169, 319, 597, 795, 908
BtgI CCRYGG 1 cut(s) 801
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 5 cut(s) 398, 694, 811, 1190, 1405
BtsIMutI CAGTG 5 cut(s) 311, 394, 645, 1131, 1168
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 2 cut(s) 680, 1608
Cfr10I RCCGGY 1 cut(s) 1283
Cfr13I GGNCC 3 cut(s) 167, 287, 1136
Cfr9I CCCGGG 1 cut(s) 1228
Csp6I GTAC 2 cut(s) 331, 1348
CspAI ACCGGT 1 cut(s) 1283
CviQI GTAC 2 cut(s) 331, 1348
DdeI CTNAG 2 cut(s) 291, 1299
DpnI GATC 6 cut(s) 203, 748, 1044, 1226, 1293, 1503
DpnII GATC 6 cut(s) 201, 746, 1042, 1224, 1291, 1501
DraIII CACNNNGTG 1 cut(s) 389
EaeI YGGCCR 2 cut(s) 793, 906
Eam1104I CTCTTC 3 cut(s) 687, 733, 1088
EarI CTCTTC 3 cut(s) 687, 733, 1088
Eco130I CCWWGG 1 cut(s) 801
Eco47I GGWCC 2 cut(s) 287, 1136
Eco88I CYCGRG 1 cut(s) 1228
EcoRI GAATTC 1 cut(s) 947
EcoRII CCWGG 7 cut(s) 163, 275, 319, 439, 592, 790, 1573
EcoT14I CCWWGG 1 cut(s) 801
EcoT22I ATGCAT 2 cut(s) 574, 1593
ErhI CCWWGG 1 cut(s) 801
Esp3I CGTCTC 1 cut(s) 735
FaqI GGGAC 1 cut(s) 1043
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 63, 263, 852, 1158
FokI GGATG 5 cut(s) 405, 701, 818, 1177, 1392
Fsp4HI GCNGC 4 cut(s) 63, 263, 852, 1158
FspBI CTAG 3 cut(s) 491, 1391, 1640
GlaI GCGC 2 cut(s) 679, 1607
GluI GCNGC 4 cut(s) 63, 263, 852, 1158
GsaI CCCAGC 1 cut(s) 1450
HaeII RGCGCY 1 cut(s) 1609
HaeIII GGCC 5 cut(s) 169, 319, 597, 795, 908
HapII CCGG 2 cut(s) 1229, 1284
HhaI GCGC 2 cut(s) 680, 1608
Hin6I GCGC 2 cut(s) 678, 1606
HinP1I GCGC 2 cut(s) 678, 1606
HincII GTYRAC 1 cut(s) 1311
HindII GTYRAC 1 cut(s) 1311
HindIII AAGCTT 3 cut(s) 835, 924, 1177
HinfI GANTC 3 cut(s) 1020, 1527, 1557
HpaII CCGG 2 cut(s) 1229, 1284
HphI GGTGA 6 cut(s) 109, 506, 1003, 1037, 1081, 1298
Hpy166II GTNNAC 6 cut(s) 333, 351, 1072, 1102, 1168, 1311
Hpy188I TCNGA 5 cut(s) 283, 568, 669, 1556, 1562
Hpy188III TCNNGA 6 cut(s) 142, 944, 1024, 1240, 1298, 1688
Hpy8I GTNNAC 6 cut(s) 333, 351, 1072, 1102, 1168, 1311
HpyAV CCTTC 4 cut(s) 356, 466, 1324, 1326
HpyCH4III ACNGT 7 cut(s) 148, 306, 389, 409, 640, 1522, 1630
HpyCH4IV ACGT 1 cut(s) 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 857, 878, 1372
HpyF3I CTNAG 2 cut(s) 291, 1299
HpySE526I ACGT 1 cut(s) 1056
HspAI GCGC 2 cut(s) 678, 1606
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 6 cut(s) 201, 746, 1042, 1224, 1291, 1501
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 5 cut(s) 617, 643, 793, 878, 1026
Lsp1109I GCAGC 3 cut(s) 274, 838, 1144
LweI GCATC 4 cut(s) 49, 559, 1007, 1578
MaeI CTAG 3 cut(s) 491, 1391, 1640
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 3 cut(s) 766, 1118, 1595
MalI GATC 6 cut(s) 203, 748, 1044, 1226, 1293, 1503
MboI GATC 6 cut(s) 201, 746, 1042, 1224, 1291, 1501
MflI RGATCY 3 cut(s) 746, 1224, 1291
MhlI GDGCHC 1 cut(s) 311
MlsI TGGCCA 1 cut(s) 795
MluNI TGGCCA 1 cut(s) 795
MlyI GAGTC 1 cut(s) 1536
MmeI TCCRAC 1 cut(s) 1504
Mox20I TGGCCA 1 cut(s) 795
Mph1103I ATGCAT 2 cut(s) 574, 1593
MroXI GAANNNNTTC 1 cut(s) 1293
MscI TGGCCA 1 cut(s) 795
MseI TTAA 4 cut(s) 207, 258, 1110, 1275
MslI CAYNNNNRTG 4 cut(s) 249, 1331, 1419, 1536
Msp20I TGGCCA 1 cut(s) 795
MspI CCGG 2 cut(s) 1229, 1284
MspR9I CCNGG 9 cut(s) 165, 277, 321, 441, 594, 792, 1229, 1230, 1575
MvaI CCWGG 7 cut(s) 165, 277, 321, 441, 594, 792, 1575
MwoI GCNNNNNNNGC 3 cut(s) 857, 878, 1372
NciI CCSGG 2 cut(s) 1229, 1230
NcoI CCATGG 1 cut(s) 801
NdeII GATC 6 cut(s) 201, 746, 1042, 1224, 1291, 1501
NlaIV GGNNCC 4 cut(s) 418, 480, 748, 1028
NmuCI GTSAC 2 cut(s) 766, 1595
NsiI ATGCAT 2 cut(s) 574, 1593
NspI RCATGY 2 cut(s) 383, 1070
NspV TTCGAA 1 cut(s) 630
OliI CACNNNNGTG 1 cut(s) 1331
PaeI GCATGC 1 cut(s) 383
PciI ACATGT 1 cut(s) 1066
PciSI GCTCTTC 1 cut(s) 687
PdmI GAANNNNTTC 1 cut(s) 1293
PfeI GAWTC 2 cut(s) 1020, 1557
PflMI CCANNNNNTGG 3 cut(s) 440, 802, 1133
PinAI ACCGGT 1 cut(s) 1283
PkrI GCNGC 4 cut(s) 64, 264, 853, 1159
PleI GAGTC 1 cut(s) 1535
PpsI GAGTC 1 cut(s) 1535
PscI ACATGT 1 cut(s) 1066
PsiI TTATAA 2 cut(s) 960, 1491
Psp6I CCWGG 7 cut(s) 163, 275, 319, 439, 592, 790, 1573
PspFI CCCAGC 1 cut(s) 1446
PspGI CCWGG 7 cut(s) 163, 275, 319, 439, 592, 790, 1573
PspN4I GGNNCC 4 cut(s) 418, 480, 748, 1028
PspPI GGNCC 3 cut(s) 167, 287, 1136
PsuI RGATCY 3 cut(s) 746, 1224, 1291
RsaI GTAC 2 cut(s) 332, 1349
RsaNI GTAC 2 cut(s) 331, 1348
RseI CAYNNNNRTG 4 cut(s) 249, 1331, 1419, 1536
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 4 cut(s) 207, 258, 1110, 1275
SatI GCNGC 4 cut(s) 63, 263, 852, 1158
Sau3AI GATC 6 cut(s) 201, 746, 1042, 1224, 1291, 1501
Sau96I GGNCC 3 cut(s) 167, 287, 1136
SchI GAGTC 1 cut(s) 1536
ScrFI CCNGG 9 cut(s) 165, 277, 321, 441, 594, 792, 1229, 1230, 1575
SduI GDGCHC 1 cut(s) 311
SfaNI GCATC 4 cut(s) 49, 559, 1007, 1578
SfuI TTCGAA 1 cut(s) 630
SinI GGWCC 2 cut(s) 287, 1136
SmaI CCCGGG 1 cut(s) 1230
SmiMI CAYNNNNRTG 4 cut(s) 249, 1331, 1419, 1536
SphI GCATGC 1 cut(s) 383
SsiI CCGC 1 cut(s) 63
SspMI CTAG 3 cut(s) 491, 1391, 1640
StyD4I CCNGG 9 cut(s) 163, 275, 319, 439, 592, 790, 1227, 1228, 1573
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 7 cut(s) 148, 306, 389, 409, 640, 1522, 1630
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 5 cut(s) 118, 630, 1197, 1207, 1239
TatI WGTACW 2 cut(s) 330, 1347
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 1020, 1557
Tru1I TTAA 4 cut(s) 207, 258, 1110, 1275
Tru9I TTAA 4 cut(s) 207, 258, 1110, 1275
TscAI CASTG 5 cut(s) 311, 394, 645, 1138, 1168
TseFI GTSAC 2 cut(s) 766, 1595
TseI GCWGC 3 cut(s) 262, 851, 1157
Tsp45I GTSAC 2 cut(s) 766, 1595
TspDTI ATGAA 6 cut(s) 233, 401, 705, 835, 918, 951
TspGWI ACGGA 1 cut(s) 759
TspMI CCCGGG 1 cut(s) 1228
TspRI CASTG 5 cut(s) 311, 394, 645, 1138, 1168
Van91I CCANNNNNTGG 3 cut(s) 440, 802, 1133
VpaK11BI GGWCC 2 cut(s) 287, 1136
XapI RAATTY 4 cut(s) 947, 962, 1271, 1671
XceI RCATGY 2 cut(s) 383, 1070
XcmI CCANNNNNNNNNTGG 1 cut(s) 273
XmaI CCCGGG 1 cut(s) 1228
XmnI GAANNNNTTC 1 cut(s) 1293
XspI CTAG 3 cut(s) 491, 1391, 1640
Zsp2I ATGCAT 2 cut(s) 574, 1593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.