Lignin degradation and detoxification of lignin-derived products
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G09360 |
| fragaria_vesca | FvH4_5g30720 |
| malus_domestica | MD15G1412600.v1.1 |
| prunus_persica | Prupe.1G559300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0225621 |
| rosa_laevigata | RLG00000001800 |
| rosa_multiflora | Rmu_co8516127.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00233630 |
| rosa_rugosa | Rorug07G0231900 |
| rosa_samantha | Rh7AG371900 Rh7BG365800 Rh7DG376600 |
| rosa_wichuraiana | Rw7G031780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 960, 1491 |
| AccB1I | GGYRCC | 1 cut(s) | 416 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 440, 802, 1133 |
| AciI | CCGC | 1 cut(s) | 63 |
| AclWI | GGATC | 4 cut(s) | 741, 754, 1219, 1496 |
| AcoI | YGGCCR | 2 cut(s) | 793, 906 |
| AcsI | RAATTY | 4 cut(s) | 947, 962, 1271, 1671 |
| AdeI | CACNNNGTG | 1 cut(s) | 389 |
| AfaI | GTAC | 2 cut(s) | 332, 1349 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 69, 440, 585, 621, 802, 1133, 1322, 1618 |
| AflIII | ACRYGT | 1 cut(s) | 1066 |
| AgeI | ACCGGT | 1 cut(s) | 1283 |
| AgsI | TTSAA | 5 cut(s) | 41, 178, 867, 1465, 1486 |
| AjnI | CCWGG | 7 cut(s) | 163, 275, 319, 439, 592, 790, 1573 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 427, 459 |
| AleI | CACNNNNGTG | 1 cut(s) | 1331 |
| Alw26I | GTCTC | 1 cut(s) | 735 |
| AlwI | GGATC | 4 cut(s) | 741, 754, 1219, 1496 |
| Ama87I | CYCGRG | 1 cut(s) | 1228 |
| AoxI | GGCC | 5 cut(s) | 167, 317, 595, 793, 906 |
| ApeKI | GCWGC | 3 cut(s) | 262, 851, 1157 |
| ApoI | RAATTY | 4 cut(s) | 947, 962, 1271, 1671 |
| AsiGI | ACCGGT | 1 cut(s) | 1283 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1293 |
| AspLEI | GCGC | 2 cut(s) | 680, 1608 |
| AspS9I | GGNCC | 3 cut(s) | 167, 287, 1136 |
| AsuC2I | CCSGG | 2 cut(s) | 1229, 1230 |
| AsuHPI | GGTGA | 6 cut(s) | 109, 506, 1003, 1037, 1081, 1298 |
| AsuII | TTCGAA | 1 cut(s) | 630 |
| AvaI | CYCGRG | 1 cut(s) | 1228 |
| AvaII | GGWCC | 2 cut(s) | 287, 1136 |
| BaeGI | GKGCMC | 1 cut(s) | 311 |
| BalI | TGGCCA | 1 cut(s) | 795 |
| BamHI | GGATCC | 1 cut(s) | 746 |
| BanI | GGYRCC | 1 cut(s) | 416 |
| BbvI | GCAGC | 3 cut(s) | 274, 838, 1144 |
| BccI | CCATC | 7 cut(s) | 87, 278, 387, 606, 1198, 1202, 1413 |
| BceAI | ACGGC | 2 cut(s) | 921, 1339 |
| BciT130I | CCWGG | 7 cut(s) | 165, 277, 321, 441, 594, 792, 1575 |
| BclI | TGATCA | 1 cut(s) | 201 |
| BcnI | CCSGG | 2 cut(s) | 1229, 1230 |
| BcoDI | GTCTC | 1 cut(s) | 735 |
| BfaI | CTAG | 3 cut(s) | 491, 1391, 1640 |
| BfoI | RGCGCY | 1 cut(s) | 1609 |
| BglII | AGATCT | 1 cut(s) | 1291 |
| BisI | GCNGC | 4 cut(s) | 63, 263, 852, 1158 |
| BlsI | GCNGC | 4 cut(s) | 64, 264, 853, 1159 |
| Bme1390I | CCNGG | 9 cut(s) | 165, 277, 321, 441, 594, 792, 1229, 1230, 1575 |
| Bme18I | GGWCC | 2 cut(s) | 287, 1136 |
| BmeT110I | CYCGRG | 1 cut(s) | 1228 |
| BmgT120I | GGNCC | 3 cut(s) | 167, 287, 1136 |
| BmiI | GGNNCC | 4 cut(s) | 418, 480, 748, 1028 |
| BmrFI | CCNGG | 9 cut(s) | 165, 277, 321, 441, 594, 792, 1229, 1230, 1575 |
| BmsI | GCATC | 4 cut(s) | 49, 559, 1007, 1578 |
| Bpu14I | TTCGAA | 1 cut(s) | 630 |
| BpuMI | CCSGG | 2 cut(s) | 1229, 1230 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1404 |
| BsaJI | CCNNGG | 4 cut(s) | 164, 275, 801, 1228 |
| BsaWI | WCCGGW | 1 cut(s) | 1283 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 69, 440, 585, 621, 802, 1133, 1322, 1618 |
| Bse118I | RCCGGY | 1 cut(s) | 1283 |
| Bse1I | ACTGG | 2 cut(s) | 1138, 1161 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1404 |
| BseBI | CCWGG | 7 cut(s) | 165, 277, 321, 441, 594, 792, 1575 |
| BseDI | CCNNGG | 4 cut(s) | 164, 275, 801, 1228 |
| BseGI | GGATG | 5 cut(s) | 398, 694, 811, 1190, 1405 |
| BseJI | GATNNNNATC | 1 cut(s) | 1404 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 69, 440, 585, 621, 802, 1133, 1322, 1618 |
| BseMII | CTCAG | 2 cut(s) | 282, 1290 |
| BseNI | ACTGG | 2 cut(s) | 1138, 1161 |
| BseRI | GAGGAG | 3 cut(s) | 204, 564, 1526 |
| BseSI | GKGCMC | 1 cut(s) | 311 |
| BseXI | GCAGC | 3 cut(s) | 274, 838, 1144 |
| BseYI | CCCAGC | 1 cut(s) | 1446 |
| BshFI | GGCC | 5 cut(s) | 169, 319, 597, 795, 908 |
| BshNI | GGYRCC | 1 cut(s) | 416 |
| BshTI | ACCGGT | 1 cut(s) | 1283 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1228 |
| BsiSI | CCGG | 2 cut(s) | 1229, 1284 |
| BslFI | GGGAC | 1 cut(s) | 1043 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 69, 440, 585, 621, 802, 1133, 1322, 1618 |
| BsmAI | GTCTC | 1 cut(s) | 735 |
| BsmBI | CGTCTC | 1 cut(s) | 735 |
| BsmFI | GGGAC | 1 cut(s) | 1043 |
| BsnI | GGCC | 5 cut(s) | 169, 319, 597, 795, 908 |
| BsoBI | CYCGRG | 1 cut(s) | 1228 |
| Bsp119I | TTCGAA | 1 cut(s) | 630 |
| Bsp1286I | GDGCHC | 1 cut(s) | 311 |
| Bsp143I | GATC | 6 cut(s) | 201, 746, 1042, 1224, 1291, 1501 |
| Bsp19I | CCATGG | 1 cut(s) | 801 |
| BspACI | CCGC | 1 cut(s) | 63 |
| BspANI | GGCC | 5 cut(s) | 169, 319, 597, 795, 908 |
| BspCNI | CTCAG | 2 cut(s) | 283, 1291 |
| BspLI | GGNNCC | 4 cut(s) | 418, 480, 748, 1028 |
| BspPI | GGATC | 4 cut(s) | 741, 754, 1219, 1496 |
| BspQI | GCTCTTC | 1 cut(s) | 687 |
| BspT104I | TTCGAA | 1 cut(s) | 630 |
| BspT107I | GGYRCC | 1 cut(s) | 416 |
| BsrFI | RCCGGY | 1 cut(s) | 1283 |
| BsrI | ACTGG | 2 cut(s) | 1138, 1161 |
| BssAI | RCCGGY | 1 cut(s) | 1283 |
| BssECI | CCNNGG | 4 cut(s) | 164, 275, 801, 1228 |
| BssMI | GATC | 6 cut(s) | 201, 746, 1042, 1224, 1291, 1501 |
| BssT1I | CCWWGG | 1 cut(s) | 801 |
| Bst2UI | CCWGG | 7 cut(s) | 165, 277, 321, 441, 594, 792, 1575 |
| Bst4CI | ACNGT | 7 cut(s) | 148, 306, 389, 409, 640, 1522, 1630 |
| Bst6I | CTCTTC | 3 cut(s) | 687, 733, 1088 |
| BstBI | TTCGAA | 1 cut(s) | 630 |
| BstC8I | GCNNGC | 1 cut(s) | 381 |
| BstDEI | CTNAG | 2 cut(s) | 291, 1299 |
| BstDSI | CCRYGG | 1 cut(s) | 801 |
| BstF5I | GGATG | 5 cut(s) | 398, 694, 811, 1190, 1405 |
| BstH2I | RGCGCY | 1 cut(s) | 1609 |
| BstHHI | GCGC | 2 cut(s) | 680, 1608 |
| BstKTI | GATC | 6 cut(s) | 204, 749, 1045, 1227, 1294, 1504 |
| BstMAI | GTCTC | 1 cut(s) | 735 |
| BstMBI | GATC | 6 cut(s) | 201, 746, 1042, 1224, 1291, 1501 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 857, 878, 1372 |
| BstNI | CCWGG | 7 cut(s) | 165, 277, 321, 441, 594, 792, 1575 |
| BstNSI | RCATGY | 2 cut(s) | 383, 1070 |
| BstSCI | CCNGG | 9 cut(s) | 163, 275, 319, 439, 592, 790, 1227, 1228, 1573 |
| BstSLI | GKGCMC | 1 cut(s) | 311 |
| BstV1I | GCAGC | 3 cut(s) | 274, 838, 1144 |
| BstX2I | RGATCY | 3 cut(s) | 746, 1224, 1291 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1538, 1581 |
| BstYI | RGATCY | 3 cut(s) | 746, 1224, 1291 |
| BsuRI | GGCC | 5 cut(s) | 169, 319, 597, 795, 908 |
| BtgI | CCRYGG | 1 cut(s) | 801 |
| BtgZI | GCGATG | 1 cut(s) | 65 |
| BtsCI | GGATG | 5 cut(s) | 398, 694, 811, 1190, 1405 |
| BtsIMutI | CAGTG | 5 cut(s) | 311, 394, 645, 1131, 1168 |
| Cac8I | GCNNGC | 1 cut(s) | 381 |
| CfoI | GCGC | 2 cut(s) | 680, 1608 |
| Cfr10I | RCCGGY | 1 cut(s) | 1283 |
| Cfr13I | GGNCC | 3 cut(s) | 167, 287, 1136 |
| Cfr9I | CCCGGG | 1 cut(s) | 1228 |
| Csp6I | GTAC | 2 cut(s) | 331, 1348 |
| CspAI | ACCGGT | 1 cut(s) | 1283 |
| CviQI | GTAC | 2 cut(s) | 331, 1348 |
| DdeI | CTNAG | 2 cut(s) | 291, 1299 |
| DpnI | GATC | 6 cut(s) | 203, 748, 1044, 1226, 1293, 1503 |
| DpnII | GATC | 6 cut(s) | 201, 746, 1042, 1224, 1291, 1501 |
| DraIII | CACNNNGTG | 1 cut(s) | 389 |
| EaeI | YGGCCR | 2 cut(s) | 793, 906 |
| Eam1104I | CTCTTC | 3 cut(s) | 687, 733, 1088 |
| EarI | CTCTTC | 3 cut(s) | 687, 733, 1088 |
| Eco130I | CCWWGG | 1 cut(s) | 801 |
| Eco47I | GGWCC | 2 cut(s) | 287, 1136 |
| Eco88I | CYCGRG | 1 cut(s) | 1228 |
| EcoRI | GAATTC | 1 cut(s) | 947 |
| EcoRII | CCWGG | 7 cut(s) | 163, 275, 319, 439, 592, 790, 1573 |
| EcoT14I | CCWWGG | 1 cut(s) | 801 |
| EcoT22I | ATGCAT | 2 cut(s) | 574, 1593 |
| ErhI | CCWWGG | 1 cut(s) | 801 |
| Esp3I | CGTCTC | 1 cut(s) | 735 |
| FaqI | GGGAC | 1 cut(s) | 1043 |
| FbaI | TGATCA | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 4 cut(s) | 63, 263, 852, 1158 |
| FokI | GGATG | 5 cut(s) | 405, 701, 818, 1177, 1392 |
| Fsp4HI | GCNGC | 4 cut(s) | 63, 263, 852, 1158 |
| FspBI | CTAG | 3 cut(s) | 491, 1391, 1640 |
| GlaI | GCGC | 2 cut(s) | 679, 1607 |
| GluI | GCNGC | 4 cut(s) | 63, 263, 852, 1158 |
| GsaI | CCCAGC | 1 cut(s) | 1450 |
| HaeII | RGCGCY | 1 cut(s) | 1609 |
| HaeIII | GGCC | 5 cut(s) | 169, 319, 597, 795, 908 |
| HapII | CCGG | 2 cut(s) | 1229, 1284 |
| HhaI | GCGC | 2 cut(s) | 680, 1608 |
| Hin6I | GCGC | 2 cut(s) | 678, 1606 |
| HinP1I | GCGC | 2 cut(s) | 678, 1606 |
| HincII | GTYRAC | 1 cut(s) | 1311 |
| HindII | GTYRAC | 1 cut(s) | 1311 |
| HindIII | AAGCTT | 3 cut(s) | 835, 924, 1177 |
| HinfI | GANTC | 3 cut(s) | 1020, 1527, 1557 |
| HpaII | CCGG | 2 cut(s) | 1229, 1284 |
| HphI | GGTGA | 6 cut(s) | 109, 506, 1003, 1037, 1081, 1298 |
| Hpy166II | GTNNAC | 6 cut(s) | 333, 351, 1072, 1102, 1168, 1311 |
| Hpy188I | TCNGA | 5 cut(s) | 283, 568, 669, 1556, 1562 |
| Hpy188III | TCNNGA | 6 cut(s) | 142, 944, 1024, 1240, 1298, 1688 |
| Hpy8I | GTNNAC | 6 cut(s) | 333, 351, 1072, 1102, 1168, 1311 |
| HpyAV | CCTTC | 4 cut(s) | 356, 466, 1324, 1326 |
| HpyCH4III | ACNGT | 7 cut(s) | 148, 306, 389, 409, 640, 1522, 1630 |
| HpyCH4IV | ACGT | 1 cut(s) | 1056 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 857, 878, 1372 |
| HpyF3I | CTNAG | 2 cut(s) | 291, 1299 |
| HpySE526I | ACGT | 1 cut(s) | 1056 |
| HspAI | GCGC | 2 cut(s) | 678, 1606 |
| Ksp22I | TGATCA | 1 cut(s) | 201 |
| Kzo9I | GATC | 6 cut(s) | 201, 746, 1042, 1224, 1291, 1501 |
| LguI | GCTCTTC | 1 cut(s) | 687 |
| LmnI | GCTCC | 5 cut(s) | 617, 643, 793, 878, 1026 |
| Lsp1109I | GCAGC | 3 cut(s) | 274, 838, 1144 |
| LweI | GCATC | 4 cut(s) | 49, 559, 1007, 1578 |
| MaeI | CTAG | 3 cut(s) | 491, 1391, 1640 |
| MaeII | ACGT | 1 cut(s) | 1056 |
| MaeIII | GTNAC | 3 cut(s) | 766, 1118, 1595 |
| MalI | GATC | 6 cut(s) | 203, 748, 1044, 1226, 1293, 1503 |
| MboI | GATC | 6 cut(s) | 201, 746, 1042, 1224, 1291, 1501 |
| MflI | RGATCY | 3 cut(s) | 746, 1224, 1291 |
| MhlI | GDGCHC | 1 cut(s) | 311 |
| MlsI | TGGCCA | 1 cut(s) | 795 |
| MluNI | TGGCCA | 1 cut(s) | 795 |
| MlyI | GAGTC | 1 cut(s) | 1536 |
| MmeI | TCCRAC | 1 cut(s) | 1504 |
| Mox20I | TGGCCA | 1 cut(s) | 795 |
| Mph1103I | ATGCAT | 2 cut(s) | 574, 1593 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1293 |
| MscI | TGGCCA | 1 cut(s) | 795 |
| MseI | TTAA | 4 cut(s) | 207, 258, 1110, 1275 |
| MslI | CAYNNNNRTG | 4 cut(s) | 249, 1331, 1419, 1536 |
| Msp20I | TGGCCA | 1 cut(s) | 795 |
| MspI | CCGG | 2 cut(s) | 1229, 1284 |
| MspR9I | CCNGG | 9 cut(s) | 165, 277, 321, 441, 594, 792, 1229, 1230, 1575 |
| MvaI | CCWGG | 7 cut(s) | 165, 277, 321, 441, 594, 792, 1575 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 857, 878, 1372 |
| NciI | CCSGG | 2 cut(s) | 1229, 1230 |
| NcoI | CCATGG | 1 cut(s) | 801 |
| NdeII | GATC | 6 cut(s) | 201, 746, 1042, 1224, 1291, 1501 |
| NlaIV | GGNNCC | 4 cut(s) | 418, 480, 748, 1028 |
| NmuCI | GTSAC | 2 cut(s) | 766, 1595 |
| NsiI | ATGCAT | 2 cut(s) | 574, 1593 |
| NspI | RCATGY | 2 cut(s) | 383, 1070 |
| NspV | TTCGAA | 1 cut(s) | 630 |
| OliI | CACNNNNGTG | 1 cut(s) | 1331 |
| PaeI | GCATGC | 1 cut(s) | 383 |
| PciI | ACATGT | 1 cut(s) | 1066 |
| PciSI | GCTCTTC | 1 cut(s) | 687 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1293 |
| PfeI | GAWTC | 2 cut(s) | 1020, 1557 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 440, 802, 1133 |
| PinAI | ACCGGT | 1 cut(s) | 1283 |
| PkrI | GCNGC | 4 cut(s) | 64, 264, 853, 1159 |
| PleI | GAGTC | 1 cut(s) | 1535 |
| PpsI | GAGTC | 1 cut(s) | 1535 |
| PscI | ACATGT | 1 cut(s) | 1066 |
| PsiI | TTATAA | 2 cut(s) | 960, 1491 |
| Psp6I | CCWGG | 7 cut(s) | 163, 275, 319, 439, 592, 790, 1573 |
| PspFI | CCCAGC | 1 cut(s) | 1446 |
| PspGI | CCWGG | 7 cut(s) | 163, 275, 319, 439, 592, 790, 1573 |
| PspN4I | GGNNCC | 4 cut(s) | 418, 480, 748, 1028 |
| PspPI | GGNCC | 3 cut(s) | 167, 287, 1136 |
| PsuI | RGATCY | 3 cut(s) | 746, 1224, 1291 |
| RsaI | GTAC | 2 cut(s) | 332, 1349 |
| RsaNI | GTAC | 2 cut(s) | 331, 1348 |
| RseI | CAYNNNNRTG | 4 cut(s) | 249, 1331, 1419, 1536 |
| SapI | GCTCTTC | 1 cut(s) | 687 |
| SaqAI | TTAA | 4 cut(s) | 207, 258, 1110, 1275 |
| SatI | GCNGC | 4 cut(s) | 63, 263, 852, 1158 |
| Sau3AI | GATC | 6 cut(s) | 201, 746, 1042, 1224, 1291, 1501 |
| Sau96I | GGNCC | 3 cut(s) | 167, 287, 1136 |
| SchI | GAGTC | 1 cut(s) | 1536 |
| ScrFI | CCNGG | 9 cut(s) | 165, 277, 321, 441, 594, 792, 1229, 1230, 1575 |
| SduI | GDGCHC | 1 cut(s) | 311 |
| SfaNI | GCATC | 4 cut(s) | 49, 559, 1007, 1578 |
| SfuI | TTCGAA | 1 cut(s) | 630 |
| SinI | GGWCC | 2 cut(s) | 287, 1136 |
| SmaI | CCCGGG | 1 cut(s) | 1230 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 249, 1331, 1419, 1536 |
| SphI | GCATGC | 1 cut(s) | 383 |
| SsiI | CCGC | 1 cut(s) | 63 |
| SspMI | CTAG | 3 cut(s) | 491, 1391, 1640 |
| StyD4I | CCNGG | 9 cut(s) | 163, 275, 319, 439, 592, 790, 1227, 1228, 1573 |
| StyI | CCWWGG | 1 cut(s) | 801 |
| TaaI | ACNGT | 7 cut(s) | 148, 306, 389, 409, 640, 1522, 1630 |
| TaiI | ACGT | 1 cut(s) | 1059 |
| TaqI | TCGA | 5 cut(s) | 118, 630, 1197, 1207, 1239 |
| TatI | WGTACW | 2 cut(s) | 330, 1347 |
| TauI | GCSGC | 1 cut(s) | 65 |
| TfiI | GAWTC | 2 cut(s) | 1020, 1557 |
| Tru1I | TTAA | 4 cut(s) | 207, 258, 1110, 1275 |
| Tru9I | TTAA | 4 cut(s) | 207, 258, 1110, 1275 |
| TscAI | CASTG | 5 cut(s) | 311, 394, 645, 1138, 1168 |
| TseFI | GTSAC | 2 cut(s) | 766, 1595 |
| TseI | GCWGC | 3 cut(s) | 262, 851, 1157 |
| Tsp45I | GTSAC | 2 cut(s) | 766, 1595 |
| TspDTI | ATGAA | 6 cut(s) | 233, 401, 705, 835, 918, 951 |
| TspGWI | ACGGA | 1 cut(s) | 759 |
| TspMI | CCCGGG | 1 cut(s) | 1228 |
| TspRI | CASTG | 5 cut(s) | 311, 394, 645, 1138, 1168 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 440, 802, 1133 |
| VpaK11BI | GGWCC | 2 cut(s) | 287, 1136 |
| XapI | RAATTY | 4 cut(s) | 947, 962, 1271, 1671 |
| XceI | RCATGY | 2 cut(s) | 383, 1070 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 273 |
| XmaI | CCCGGG | 1 cut(s) | 1228 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1293 |
| XspI | CTAG | 3 cut(s) | 491, 1391, 1640 |
| Zsp2I | ATGCAT | 2 cut(s) | 574, 1593 |